EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000019807 (Gene tree)
Gene ID: 103377398
Gene Symbol: si:dkey-37o8.1
Alias: fi12b10|wu:fi12b10
Full Name: elongation factor 1-alpha-like
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 2002 bases
Position: chr3:13245003-13247004
Accession: 103377398
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000030953	GTP_EFTU	PF00009.27	7.7e-52	1	1
ENSCSEP00000030953	MMR_HSR1	PF01926.23	3.3e-05	1	1
ENSCSEP00000030953	GTP_EFTU_D2	PF03144.25	8.4e-13	1	1
ENSCSEP00000030953	GTP_EFTU_D3	PF03143.17	3.4e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000031360	-	1377	XM_008308191	ENSCSEP00000030953	458 (aa)	XP_008306413	-

Gene Model

Click here to download ENSCSEG00000019807's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000019807's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000019807	si:dkey-37o8.1	99	67.396	ENSCSEG00000008004	-	97	68.142
ENSCSEG00000019807	si:dkey-37o8.1	97	67.778	ENSCSEG00000000544	eef1a1b	100	67.026
ENSCSEG00000019807	si:dkey-37o8.1	86	66.412	ENSCSEG00000007992	-	93	66.412
ENSCSEG00000019807	si:dkey-37o8.1	96	35.601	ENSCSEG00000019708	GSPT1	75	35.601
ENSCSEG00000019807	si:dkey-37o8.1	83	69.474	ENSCSEG00000007972	-	92	69.474
ENSCSEG00000019807	si:dkey-37o8.1	97	66.741	ENSCSEG00000008011	-	96	67.494
ENSCSEG00000019807	si:dkey-37o8.1	95	36.465	ENSCSEG00000002794	hbs1l	63	36.036

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000019807	si:dkey-37o8.1	100	85.097	ENSAPOG00000016459	si:dkey-37o8.1	100	85.808	Acanthochromis_polyacanthus
ENSCSEG00000019807	si:dkey-37o8.1	97	82.705	ENSACIG00000020985	si:dkey-37o8.1	83	83.408	Amphilophus_citrinellus
ENSCSEG00000019807	si:dkey-37o8.1	100	86.853	ENSAOCG00000002663	si:dkey-37o8.1	100	87.582	Amphiprion_ocellaris
ENSCSEG00000019807	si:dkey-37o8.1	100	86.853	ENSAPEG00000012670	si:dkey-37o8.1	100	87.582	Amphiprion_percula
ENSCSEG00000019807	si:dkey-37o8.1	93	86.744	ENSATEG00000002217	si:dkey-37o8.1	99	87.529	Anabas_testudineus
ENSCSEG00000019807	si:dkey-37o8.1	100	84.665	ENSACLG00000003519	si:dkey-37o8.1	100	85.371	Astatotilapia_calliptera
ENSCSEG00000019807	si:dkey-37o8.1	100	78.065	ENSAMXG00000002728	si:dkey-37o8.1	100	78.913	Astyanax_mexicanus
ENSCSEG00000019807	si:dkey-37o8.1	97	70.721	ENSCPBG00000020570	-	87	70.203	Chrysemys_picta_bellii
ENSCSEG00000019807	si:dkey-37o8.1	99	83.514	ENSCVAG00000009828	si:dkey-37o8.1	99	84.211	Cyprinodon_variegatus
ENSCSEG00000019807	si:dkey-37o8.1	100	73.978	ENSDARG00000071727	si:dkey-37o8.1	95	74.783	Danio_rerio
ENSCSEG00000019807	si:dkey-37o8.1	100	78.495	ENSELUG00000007495	si:dkey-37o8.1	100	79.348	Esox_lucius
ENSCSEG00000019807	si:dkey-37o8.1	98	83.370	ENSFHEG00000017452	si:dkey-37o8.1	98	84.071	Fundulus_heteroclitus
ENSCSEG00000019807	si:dkey-37o8.1	98	75.219	ENSGMOG00000006122	si:dkey-37o8.1	99	76.053	Gadus_morhua
ENSCSEG00000019807	si:dkey-37o8.1	99	77.293	ENSGAFG00000000367	si:dkey-37o8.1	100	77.925	Gambusia_affinis
ENSCSEG00000019807	si:dkey-37o8.1	100	82.328	ENSGACG00000004505	si:dkey-37o8.1	100	83.007	Gasterosteus_aculeatus
ENSCSEG00000019807	si:dkey-37o8.1	97	71.558	ENSGAGG00000007724	-	95	71.558	Gopherus_agassizii
ENSCSEG00000019807	si:dkey-37o8.1	100	84.449	ENSHBUG00000015515	si:dkey-37o8.1	100	85.153	Haplochromis_burtoni
ENSCSEG00000019807	si:dkey-37o8.1	97	77.556	ENSHCOG00000001215	si:dkey-37o8.1	98	78.202	Hippocampus_comes
ENSCSEG00000019807	si:dkey-37o8.1	100	77.204	ENSIPUG00000004067	si:dkey-37o8.1	100	78.043	Ictalurus_punctatus
ENSCSEG00000019807	si:dkey-37o8.1	100	82.974	ENSKMAG00000015910	si:dkey-37o8.1	100	83.660	Kryptolebias_marmoratus
ENSCSEG00000019807	si:dkey-37o8.1	100	84.881	ENSLBEG00000021334	si:dkey-37o8.1	90	85.590	Labrus_bergylta
ENSCSEG00000019807	si:dkey-37o8.1	97	71.333	ENSLACG00000003948	si:dkey-37o8.1	98	71.302	Latimeria_chalumnae
ENSCSEG00000019807	si:dkey-37o8.1	100	75.810	ENSLOCG00000011245	si:dkey-37o8.1	99	76.419	Lepisosteus_oculatus
ENSCSEG00000019807	si:dkey-37o8.1	97	70.889	ENSMAMG00000009907	si:dkey-37o8.1	93	71.685	Mastacembelus_armatus
ENSCSEG00000019807	si:dkey-37o8.1	100	84.665	ENSMZEG00005018358	si:dkey-37o8.1	100	85.371	Maylandia_zebra
ENSCSEG00000019807	si:dkey-37o8.1	98	83.956	ENSMMOG00000004111	si:dkey-37o8.1	98	84.667	Mola_mola
ENSCSEG00000019807	si:dkey-37o8.1	96	77.303	ENSMALG00000017152	si:dkey-37o8.1	99	77.727	Monopterus_albus
ENSCSEG00000019807	si:dkey-37o8.1	100	84.665	ENSNBRG00000013552	si:dkey-37o8.1	100	85.371	Neolamprologus_brichardi
ENSCSEG00000019807	si:dkey-37o8.1	100	84.449	ENSONIG00000006165	si:dkey-37o8.1	100	85.153	Oreochromis_niloticus
ENSCSEG00000019807	si:dkey-37o8.1	100	83.836	ENSORLG00000019066	si:dkey-37o8.1	100	84.532	Oryzias_latipes
ENSCSEG00000019807	si:dkey-37o8.1	100	83.836	ENSORLG00020008094	si:dkey-37o8.1	100	84.532	Oryzias_latipes_hni
ENSCSEG00000019807	si:dkey-37o8.1	100	83.836	ENSORLG00015008410	si:dkey-37o8.1	100	84.532	Oryzias_latipes_hsok
ENSCSEG00000019807	si:dkey-37o8.1	100	83.405	ENSOMEG00000001868	si:dkey-37o8.1	100	84.096	Oryzias_melastigma
ENSCSEG00000019807	si:dkey-37o8.1	99	77.922	ENSPKIG00000017246	si:dkey-37o8.1	99	78.556	Paramormyrops_kingsleyae
ENSCSEG00000019807	si:dkey-37o8.1	58	67.528	ENSPSIG00000008080	-	95	67.528	Pelodiscus_sinensis
ENSCSEG00000019807	si:dkey-37o8.1	98	84.245	ENSPFOG00000013173	si:dkey-37o8.1	98	84.956	Poecilia_formosa
ENSCSEG00000019807	si:dkey-37o8.1	100	82.112	ENSPLAG00000010405	si:dkey-37o8.1	100	82.789	Poecilia_latipinna
ENSCSEG00000019807	si:dkey-37o8.1	98	84.683	ENSPMEG00000015233	si:dkey-37o8.1	98	85.398	Poecilia_mexicana
ENSCSEG00000019807	si:dkey-37o8.1	98	84.141	ENSPREG00000006280	si:dkey-37o8.1	98	84.855	Poecilia_reticulata
ENSCSEG00000019807	si:dkey-37o8.1	100	84.017	ENSPNYG00000002059	si:dkey-37o8.1	100	84.716	Pundamilia_nyererei
ENSCSEG00000019807	si:dkey-37o8.1	100	77.634	ENSPNAG00000009990	si:dkey-37o8.1	100	78.478	Pygocentrus_nattereri
ENSCSEG00000019807	si:dkey-37o8.1	97	78.652	ENSSFOG00015019070	si:dkey-37o8.1	97	78.652	Scleropages_formosus
ENSCSEG00000019807	si:dkey-37o8.1	100	86.177	ENSSMAG00000016143	si:dkey-37o8.1	100	86.900	Scophthalmus_maximus
ENSCSEG00000019807	si:dkey-37o8.1	100	86.638	ENSSDUG00000009163	si:dkey-37o8.1	100	87.364	Seriola_dumerili
ENSCSEG00000019807	si:dkey-37o8.1	100	86.422	ENSSLDG00000023761	si:dkey-37o8.1	100	87.146	Seriola_lalandi_dorsalis
ENSCSEG00000019807	si:dkey-37o8.1	99	67.974	ENSSPUG00000007467	-	99	67.826	Sphenodon_punctatus
ENSCSEG00000019807	si:dkey-37o8.1	100	85.991	ENSSPAG00000013856	si:dkey-37o8.1	100	86.710	Stegastes_partitus
ENSCSEG00000019807	si:dkey-37o8.1	99	85.435	ENSTRUG00000009006	si:dkey-37o8.1	100	86.154	Takifugu_rubripes
ENSCSEG00000019807	si:dkey-37o8.1	99	84.881	ENSTNIG00000017138	si:dkey-37o8.1	98	85.590	Tetraodon_nigroviridis
ENSCSEG00000019807	si:dkey-37o8.1	96	72.584	ENSXETG00000017744	42Sp50	96	72.098	Xenopus_tropicalis
ENSCSEG00000019807	si:dkey-37o8.1	98	84.141	ENSXCOG00000012296	si:dkey-37o8.1	98	84.855	Xiphophorus_couchianus
ENSCSEG00000019807	si:dkey-37o8.1	98	84.245	ENSXMAG00000001998	si:dkey-37o8.1	98	84.956	Xiphophorus_maculatus