EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000020190 (Gene tree)
Gene ID: 103391458
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 17229 bases
Position: chr15:19554091-19571319
Accession: 103391458
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000031564	RNA_pol_Rpb1_5	PF04998.17	1.8e-99	1	1
ENSCSEP00000031570	RNA_pol_Rpb1_5	PF04998.17	1.8e-99	1	1
ENSCSEP00000031570	RNA_pol_Rpb1_4	PF05000.17	2.5e-20	1	1
ENSCSEP00000031564	RNA_pol_Rpb1_4	PF05000.17	2.5e-20	1	1
ENSCSEP00000031570	RNA_pol_Rpb1_2	PF00623.20	2.6e-45	1	2
ENSCSEP00000031570	RNA_pol_Rpb1_2	PF00623.20	2.6e-45	2	2
ENSCSEP00000031564	RNA_pol_Rpb1_2	PF00623.20	2.6e-45	1	2
ENSCSEP00000031564	RNA_pol_Rpb1_2	PF00623.20	2.6e-45	2	2
ENSCSEP00000031570	RNA_pol_Rpb1_3	PF04983.18	2.9e-36	1	1
ENSCSEP00000031564	RNA_pol_Rpb1_3	PF04983.18	3e-36	1	1
ENSCSEP00000031564	RNA_pol_Rpb1_1	PF04997.12	4e-20	1	1
ENSCSEP00000031570	RNA_pol_Rpb1_1	PF04997.12	5.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000031974	-	4887	XM_008327727	ENSCSEP00000031564	1628 (aa)	XP_008325949	-
ENSCSET00000031980	-	4818	-	ENSCSEP00000031570	1605 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000020190's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000020190's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000020190	polr1a	69	31.429	ENSCSEG00000002635	polr2a	57	31.429
ENSCSEG00000020190	polr1a	64	31.783	ENSCSEG00000016653	polr3a	69	31.783

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000020190	polr1a	100	62.448	ENSG00000068654	POLR1A	100	62.507	Homo_sapiens
ENSCSEG00000020190	polr1a	70	80.068	ENSAPOG00000017945	polr1a	99	80.239	Acanthochromis_polyacanthus
ENSCSEG00000020190	polr1a	100	62.369	ENSAMEG00000005807	POLR1A	100	65.816	Ailuropoda_melanoleuca
ENSCSEG00000020190	polr1a	100	77.074	ENSACIG00000022147	polr1a	100	77.273	Amphilophus_citrinellus
ENSCSEG00000020190	polr1a	100	78.332	ENSAOCG00000017336	polr1a	97	86.111	Amphiprion_ocellaris
ENSCSEG00000020190	polr1a	100	78.332	ENSAPEG00000016105	polr1a	100	78.450	Amphiprion_percula
ENSCSEG00000020190	polr1a	100	78.777	ENSATEG00000016773	polr1a	100	78.777	Anabas_testudineus
ENSCSEG00000020190	polr1a	86	63.014	ENSAPLG00000013871	POLR1A	99	63.425	Anas_platyrhynchos
ENSCSEG00000020190	polr1a	99	61.435	ENSACAG00000012141	POLR1A	99	61.377	Anolis_carolinensis
ENSCSEG00000020190	polr1a	100	61.463	ENSANAG00000033927	POLR1A	100	61.463	Aotus_nancymaae
ENSCSEG00000020190	polr1a	97	77.106	ENSACLG00000020541	polr1a	100	72.186	Astatotilapia_calliptera
ENSCSEG00000020190	polr1a	100	61.356	ENSBTAG00000006481	POLR1A	100	61.708	Bos_taurus
ENSCSEG00000020190	polr1a	99	39.345	WBGene00012999	rpoa-1	77	59.783	Caenorhabditis_elegans
ENSCSEG00000020190	polr1a	100	61.485	ENSCJAG00000019547	POLR1A	100	61.311	Callithrix_jacchus
ENSCSEG00000020190	polr1a	100	62.231	ENSCAFG00000007613	POLR1A	100	62.173	Canis_familiaris
ENSCSEG00000020190	polr1a	100	62.740	ENSCAFG00020014752	POLR1A	100	62.635	Canis_lupus_dingo
ENSCSEG00000020190	polr1a	100	62.295	ENSCHIG00000018204	POLR1A	100	61.952	Capra_hircus
ENSCSEG00000020190	polr1a	100	60.872	ENSTSYG00000002761	POLR1A	100	61.453	Carlito_syrichta
ENSCSEG00000020190	polr1a	97	59.211	ENSCAPG00000010132	POLR1A	99	59.411	Cavia_aperea
ENSCSEG00000020190	polr1a	100	62.202	ENSCPOG00000012350	POLR1A	100	62.362	Cavia_porcellus
ENSCSEG00000020190	polr1a	100	61.601	ENSCCAG00000019839	POLR1A	100	61.601	Cebus_capucinus
ENSCSEG00000020190	polr1a	100	62.123	ENSCATG00000029786	POLR1A	100	62.319	Cercocebus_atys
ENSCSEG00000020190	polr1a	100	61.579	ENSCLAG00000005187	POLR1A	100	61.985	Chinchilla_lanigera
ENSCSEG00000020190	polr1a	100	62.007	ENSCSAG00000016251	POLR1A	100	62.065	Chlorocebus_sabaeus
ENSCSEG00000020190	polr1a	99	63.562	ENSCPBG00000001115	POLR1A	99	63.796	Chrysemys_picta_bellii
ENSCSEG00000020190	polr1a	96	52.754	ENSCSAVG00000007184	-	96	52.754	Ciona_savignyi
ENSCSEG00000020190	polr1a	100	59.652	ENSCANG00000031785	POLR1A	100	59.536	Colobus_angolensis_palliatus
ENSCSEG00000020190	polr1a	100	57.402	ENSCGRG00001006651	Polr1a	100	57.670	Cricetulus_griseus_chok1gshd
ENSCSEG00000020190	polr1a	61	61.988	ENSCGRG00000010834	Polr1a	100	62.439	Cricetulus_griseus_crigri
ENSCSEG00000020190	polr1a	100	74.195	ENSCVAG00000020941	polr1a	100	74.020	Cyprinodon_variegatus
ENSCSEG00000020190	polr1a	100	68.661	ENSDARG00000098375	polr1a	100	69.254	Danio_rerio
ENSCSEG00000020190	polr1a	100	58.711	ENSDNOG00000010829	POLR1A	100	58.769	Dasypus_novemcinctus
ENSCSEG00000020190	polr1a	100	60.992	ENSDORG00000008298	Polr1a	100	61.236	Dipodomys_ordii
ENSCSEG00000020190	polr1a	79	42.265	FBgn0019938	RpI1	99	41.527	Drosophila_melanogaster
ENSCSEG00000020190	polr1a	72	87.097	ENSETEG00000000412	-	71	87.097	Echinops_telfairi
ENSCSEG00000020190	polr1a	89	44.619	ENSEBUG00000005667	-	99	45.556	Eptatretus_burgeri
ENSCSEG00000020190	polr1a	100	61.775	ENSEASG00005001625	POLR1A	100	61.949	Equus_asinus_asinus
ENSCSEG00000020190	polr1a	100	61.891	ENSECAG00000036306	-	99	66.114	Equus_caballus
ENSCSEG00000020190	polr1a	100	61.891	ENSECAG00000030510	-	99	66.114	Equus_caballus
ENSCSEG00000020190	polr1a	100	61.891	ENSECAG00000010092	POLR1A	99	66.114	Equus_caballus
ENSCSEG00000020190	polr1a	84	74.897	ENSEEUG00000000676	POLR1A	84	74.897	Erinaceus_europaeus
ENSCSEG00000020190	polr1a	100	68.443	ENSELUG00000012769	polr1a	99	68.735	Esox_lucius
ENSCSEG00000020190	polr1a	100	62.311	ENSFCAG00000008966	POLR1A	100	62.195	Felis_catus
ENSCSEG00000020190	polr1a	99	61.380	ENSFALG00000010082	POLR1A	99	61.733	Ficedula_albicollis
ENSCSEG00000020190	polr1a	100	62.245	ENSFDAG00000013726	POLR1A	100	62.573	Fukomys_damarensis
ENSCSEG00000020190	polr1a	100	73.181	ENSFHEG00000005996	polr1a	100	72.976	Fundulus_heteroclitus
ENSCSEG00000020190	polr1a	100	66.766	ENSGMOG00000002230	polr1a	100	66.966	Gadus_morhua
ENSCSEG00000020190	polr1a	89	59.082	ENSGALG00000038160	-	98	59.519	Gallus_gallus
ENSCSEG00000020190	polr1a	100	74.085	ENSGAFG00000015266	polr1a	100	73.880	Gambusia_affinis
ENSCSEG00000020190	polr1a	100	73.152	ENSGACG00000018791	polr1a	100	73.210	Gasterosteus_aculeatus
ENSCSEG00000020190	polr1a	89	64.815	ENSGAGG00000004984	-	99	65.079	Gopherus_agassizii
ENSCSEG00000020190	polr1a	100	61.458	ENSGGOG00000001788	POLR1A	100	61.748	Gorilla_gorilla
ENSCSEG00000020190	polr1a	91	75.914	ENSHBUG00000020021	polr1a	100	75.914	Haplochromis_burtoni
ENSCSEG00000020190	polr1a	100	62.121	ENSHGLG00000006334	POLR1A	100	62.238	Heterocephalus_glaber_female
ENSCSEG00000020190	polr1a	100	61.941	ENSHGLG00100006614	POLR1A	100	62.057	Heterocephalus_glaber_male
ENSCSEG00000020190	polr1a	100	73.381	ENSHCOG00000003345	polr1a	100	73.381	Hippocampus_comes
ENSCSEG00000020190	polr1a	100	68.054	ENSIPUG00000013174	polr1a	100	67.977	Ictalurus_punctatus
ENSCSEG00000020190	polr1a	99	61.172	ENSSTOG00000012580	POLR1A	99	62.099	Ictidomys_tridecemlineatus
ENSCSEG00000020190	polr1a	100	61.731	ENSJJAG00000013113	Polr1a	100	62.035	Jaculus_jaculus
ENSCSEG00000020190	polr1a	100	77.310	ENSKMAG00000007399	polr1a	100	77.192	Kryptolebias_marmoratus
ENSCSEG00000020190	polr1a	100	75.150	ENSLBEG00000015401	polr1a	98	78.883	Labrus_bergylta
ENSCSEG00000020190	polr1a	53	65.147	ENSLACG00000003218	polr1a	100	65.147	Latimeria_chalumnae
ENSCSEG00000020190	polr1a	100	67.307	ENSLOCG00000010881	polr1a	100	67.481	Lepisosteus_oculatus
ENSCSEG00000020190	polr1a	100	62.209	ENSLAFG00000014948	POLR1A	100	62.355	Loxodonta_africana
ENSCSEG00000020190	polr1a	100	62.007	ENSMFAG00000046097	POLR1A	100	62.181	Macaca_fascicularis
ENSCSEG00000020190	polr1a	100	61.891	ENSMMUG00000015815	POLR1A	100	62.065	Macaca_mulatta
ENSCSEG00000020190	polr1a	100	62.007	ENSMNEG00000043313	POLR1A	100	62.181	Macaca_nemestrina
ENSCSEG00000020190	polr1a	100	61.775	ENSMLEG00000042428	POLR1A	100	61.971	Mandrillus_leucophaeus
ENSCSEG00000020190	polr1a	100	77.541	ENSMAMG00000016565	polr1a	100	77.778	Mastacembelus_armatus
ENSCSEG00000020190	polr1a	100	78.105	ENSMZEG00005004915	polr1a	100	77.869	Maylandia_zebra
ENSCSEG00000020190	polr1a	99	58.728	ENSMGAG00000013111	POLR1A	99	58.983	Meleagris_gallopavo
ENSCSEG00000020190	polr1a	91	61.407	ENSMAUG00000008497	Polr1a	100	61.699	Mesocricetus_auratus
ENSCSEG00000020190	polr1a	100	61.819	ENSMICG00000000757	POLR1A	100	61.877	Microcebus_murinus
ENSCSEG00000020190	polr1a	100	61.739	ENSMOCG00000000122	Polr1a	100	62.289	Microtus_ochrogaster
ENSCSEG00000020190	polr1a	100	74.557	ENSMMOG00000010216	polr1a	100	74.838	Mola_mola
ENSCSEG00000020190	polr1a	100	59.219	ENSMODG00000009335	POLR1A	100	58.932	Monodelphis_domestica
ENSCSEG00000020190	polr1a	100	77.412	ENSMALG00000013363	polr1a	94	84.028	Monopterus_albus
ENSCSEG00000020190	polr1a	100	61.150	MGP_CAROLIEiJ_G0028494	Polr1a	100	61.650	Mus_caroli
ENSCSEG00000020190	polr1a	100	61.034	ENSMUSG00000049553	Polr1a	100	61.534	Mus_musculus
ENSCSEG00000020190	polr1a	100	61.324	MGP_PahariEiJ_G0022230	Polr1a	100	61.919	Mus_pahari
ENSCSEG00000020190	polr1a	100	59.977	MGP_SPRETEiJ_G0029499	Polr1a	100	59.840	Mus_spretus
ENSCSEG00000020190	polr1a	100	62.485	ENSMPUG00000009135	POLR1A	100	62.195	Mustela_putorius_furo
ENSCSEG00000020190	polr1a	100	61.800	ENSMLUG00000015723	POLR1A	100	61.875	Myotis_lucifugus
ENSCSEG00000020190	polr1a	100	61.521	ENSNGAG00000017907	Polr1a	100	61.811	Nannospalax_galili
ENSCSEG00000020190	polr1a	100	77.869	ENSNBRG00000000519	polr1a	100	77.752	Neolamprologus_brichardi
ENSCSEG00000020190	polr1a	100	60.161	ENSNLEG00000002264	POLR1A	100	60.219	Nomascus_leucogenys
ENSCSEG00000020190	polr1a	76	84.252	ENSMEUG00000011665	-	75	84.252	Notamacropus_eugenii
ENSCSEG00000020190	polr1a	99	57.599	ENSOPRG00000008269	POLR1A	100	57.540	Ochotona_princeps
ENSCSEG00000020190	polr1a	100	62.304	ENSODEG00000003542	POLR1A	100	62.340	Octodon_degus
ENSCSEG00000020190	polr1a	100	77.563	ENSONIG00000015895	polr1a	100	77.745	Oreochromis_niloticus
ENSCSEG00000020190	polr1a	100	62.151	ENSOCUG00000010138	POLR1A	100	62.442	Oryctolagus_cuniculus
ENSCSEG00000020190	polr1a	100	75.426	ENSORLG00000008753	polr1a	99	75.411	Oryzias_latipes
ENSCSEG00000020190	polr1a	100	73.412	ENSORLG00020020726	polr1a	99	73.298	Oryzias_latipes_hni
ENSCSEG00000020190	polr1a	94	81.915	ENSORLG00015016071	polr1a	98	81.915	Oryzias_latipes_hsok
ENSCSEG00000020190	polr1a	100	62.065	ENSOGAG00000004031	POLR1A	100	62.065	Otolemur_garnettii
ENSCSEG00000020190	polr1a	100	61.294	ENSOARG00000020601	POLR1A	100	61.587	Ovis_aries
ENSCSEG00000020190	polr1a	100	61.516	ENSPPAG00000042450	POLR1A	100	61.806	Pan_paniscus
ENSCSEG00000020190	polr1a	100	62.101	ENSPPRG00000006702	POLR1A	100	62.137	Panthera_pardus
ENSCSEG00000020190	polr1a	100	61.943	ENSPTIG00000018783	POLR1A	100	61.979	Panthera_tigris_altaica
ENSCSEG00000020190	polr1a	100	61.632	ENSPTRG00000012147	POLR1A	100	61.921	Pan_troglodytes
ENSCSEG00000020190	polr1a	100	62.123	ENSPANG00000025908	POLR1A	100	62.319	Papio_anubis
ENSCSEG00000020190	polr1a	100	67.874	ENSPKIG00000005468	polr1a	100	67.893	Paramormyrops_kingsleyae
ENSCSEG00000020190	polr1a	64	64.552	ENSPSIG00000009321	-	99	65.019	Pelodiscus_sinensis
ENSCSEG00000020190	polr1a	55	74.434	ENSPMGG00000009718	polr1a	95	74.434	Periophthalmus_magnuspinnatus
ENSCSEG00000020190	polr1a	100	61.543	ENSPEMG00000022224	Polr1a	100	61.985	Peromyscus_maniculatus_bairdii
ENSCSEG00000020190	polr1a	95	60.220	ENSPCIG00000004222	POLR1A	99	60.552	Phascolarctos_cinereus
ENSCSEG00000020190	polr1a	100	75.176	ENSPFOG00000005025	polr1a	100	75.528	Poecilia_formosa
ENSCSEG00000020190	polr1a	100	75.338	ENSPLAG00000021389	polr1a	100	75.484	Poecilia_latipinna
ENSCSEG00000020190	polr1a	100	73.690	ENSPMEG00000006463	polr1a	100	74.024	Poecilia_mexicana
ENSCSEG00000020190	polr1a	100	75.146	ENSPREG00000002389	polr1a	99	82.353	Poecilia_reticulata
ENSCSEG00000020190	polr1a	100	61.770	ENSPPYG00000012217	POLR1A	100	61.943	Pongo_abelii
ENSCSEG00000020190	polr1a	90	70.862	ENSPCAG00000011582	POLR1A	87	70.862	Procavia_capensis
ENSCSEG00000020190	polr1a	100	61.739	ENSPCOG00000026987	POLR1A	100	61.863	Propithecus_coquereli
ENSCSEG00000020190	polr1a	95	62.158	ENSPVAG00000012674	POLR1A	94	61.641	Pteropus_vampyrus
ENSCSEG00000020190	polr1a	100	78.046	ENSPNYG00000000026	polr1a	100	77.810	Pundamilia_nyererei
ENSCSEG00000020190	polr1a	100	67.759	ENSPNAG00000019223	polr1a	100	67.993	Pygocentrus_nattereri
ENSCSEG00000020190	polr1a	100	61.302	ENSRNOG00000009545	Polr1a	100	61.570	Rattus_norvegicus
ENSCSEG00000020190	polr1a	100	61.891	ENSRBIG00000028335	POLR1A	100	62.087	Rhinopithecus_bieti
ENSCSEG00000020190	polr1a	100	61.833	ENSRROG00000031473	POLR1A	100	62.029	Rhinopithecus_roxellana
ENSCSEG00000020190	polr1a	99	35.020	YOR341W	RPA190	99	35.291	Saccharomyces_cerevisiae
ENSCSEG00000020190	polr1a	100	61.449	ENSSBOG00000030262	POLR1A	100	60.960	Saimiri_boliviensis_boliviensis
ENSCSEG00000020190	polr1a	100	56.582	ENSSHAG00000014739	POLR1A	100	56.542	Sarcophilus_harrisii
ENSCSEG00000020190	polr1a	100	67.257	ENSSFOG00015019716	polr1a	100	67.316	Scleropages_formosus
ENSCSEG00000020190	polr1a	100	79.235	ENSSMAG00000014342	polr1a	100	79.118	Scophthalmus_maximus
ENSCSEG00000020190	polr1a	100	79.589	ENSSDUG00000014631	polr1a	100	79.553	Seriola_dumerili
ENSCSEG00000020190	polr1a	100	79.928	ENSSLDG00000024095	polr1a	98	82.091	Seriola_lalandi_dorsalis
ENSCSEG00000020190	polr1a	70	95.122	ENSSARG00000003136	-	71	95.122	Sorex_araneus
ENSCSEG00000020190	polr1a	93	74.000	ENSSPUG00000004215	POLR1A	100	65.966	Sphenodon_punctatus
ENSCSEG00000020190	polr1a	69	77.269	ENSSPAG00000016341	polr1a	99	76.673	Stegastes_partitus
ENSCSEG00000020190	polr1a	84	62.875	ENSSSCG00000008226	POLR1A	99	62.875	Sus_scrofa
ENSCSEG00000020190	polr1a	99	61.484	ENSTGUG00000010704	POLR1A	100	61.625	Taeniopygia_guttata
ENSCSEG00000020190	polr1a	100	72.855	ENSTRUG00000002210	polr1a	99	72.797	Takifugu_rubripes
ENSCSEG00000020190	polr1a	100	67.652	ENSTNIG00000010116	polr1a	100	67.652	Tetraodon_nigroviridis
ENSCSEG00000020190	polr1a	72	72.566	ENSTBEG00000008646	POLR1A	73	72.566	Tupaia_belangeri
ENSCSEG00000020190	polr1a	100	59.384	ENSTTRG00000008597	POLR1A	100	59.480	Tursiops_truncatus
ENSCSEG00000020190	polr1a	68	64.217	ENSUAMG00000012158	-	92	64.304	Ursus_americanus
ENSCSEG00000020190	polr1a	100	62.073	ENSUMAG00000006700	POLR1A	97	65.393	Ursus_maritimus
ENSCSEG00000020190	polr1a	100	62.406	ENSVVUG00000001245	POLR1A	100	62.289	Vulpes_vulpes
ENSCSEG00000020190	polr1a	100	58.492	ENSXETG00000001952	polr1a	100	58.641	Xenopus_tropicalis
ENSCSEG00000020190	polr1a	100	75.191	ENSXMAG00000004032	polr1a	100	75.088	Xiphophorus_maculatus