EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000020328 (Gene tree)
Gene ID: 103386822
Gene Symbol: snrpb
Alias: zgc:77315
Full Name: small nuclear ribonucleoprotein polypeptides B and B1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 4778 bases
Position: chr11:20164316-20169093
Accession: 103386822
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000031721	LSM	PF01423.22	2.2e-19	1	1
ENSCSEP00000031724	LSM	PF01423.22	2.6e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000032134	-	792	-	ENSCSEP00000031724	263 (aa)	-	-
ENSCSET00000032131	-	1499	XM_008321236	ENSCSEP00000031721	238 (aa)	XP_008319458	UPI00049653DC

Gene Model

Click here to download ENSCSEG00000020328's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000020328's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000020328	snrpb	70	94.643	ENSG00000125835	SNRPB	74	100.000	Homo_sapiens
ENSCSEG00000020328	snrpb	100	98.333	ENSAPOG00000019606	snrpb	82	98.333	Acanthochromis_polyacanthus
ENSCSEG00000020328	snrpb	69	94.611	ENSAMEG00000011353	SNRPB	75	92.308	Ailuropoda_melanoleuca
ENSCSEG00000020328	snrpb	92	98.198	ENSACIG00000014480	snrpb	99	98.214	Amphilophus_citrinellus
ENSCSEG00000020328	snrpb	100	97.917	ENSAOCG00000006876	snrpb	100	97.917	Amphiprion_ocellaris
ENSCSEG00000020328	snrpb	100	97.917	ENSAPEG00000021585	snrpb	100	97.917	Amphiprion_percula
ENSCSEG00000020328	snrpb	100	97.500	ENSATEG00000009836	snrpb	100	97.500	Anabas_testudineus
ENSCSEG00000020328	snrpb	66	95.625	ENSACAG00000002053	SNRPB	75	93.103	Anolis_carolinensis
ENSCSEG00000020328	snrpb	70	94.643	ENSANAG00000024443	-	79	92.896	Aotus_nancymaae
ENSCSEG00000020328	snrpb	96	86.147	ENSANAG00000036271	-	74	84.699	Aotus_nancymaae
ENSCSEG00000020328	snrpb	100	98.333	ENSACLG00000014707	snrpb	100	98.333	Astatotilapia_calliptera
ENSCSEG00000020328	snrpb	99	97.881	ENSAMXG00000029434	snrpb	99	97.881	Astyanax_mexicanus
ENSCSEG00000020328	snrpb	91	81.900	ENSBTAG00000001038	SNRPB	79	92.896	Bos_taurus
ENSCSEG00000020328	snrpb	89	85.047	ENSCJAG00000023097	-	76	85.246	Callithrix_jacchus
ENSCSEG00000020328	snrpb	70	94.643	ENSCJAG00000020971	-	79	92.896	Callithrix_jacchus
ENSCSEG00000020328	snrpb	61	84.247	ENSCAFG00000031109	-	76	80.874	Canis_familiaris
ENSCSEG00000020328	snrpb	70	94.643	ENSCAFG00000006693	-	79	92.896	Canis_familiaris
ENSCSEG00000020328	snrpb	70	94.643	ENSCAFG00020016981	-	76	92.350	Canis_lupus_dingo
ENSCSEG00000020328	snrpb	70	94.643	ENSCHIG00000025449	-	79	92.896	Capra_hircus
ENSCSEG00000020328	snrpb	96	73.913	ENSTSYG00000032303	-	66	72.376	Carlito_syrichta
ENSCSEG00000020328	snrpb	70	94.643	ENSTSYG00000014498	-	79	92.896	Carlito_syrichta
ENSCSEG00000020328	snrpb	69	94.611	ENSCAPG00000012669	SNRPB	79	92.857	Cavia_aperea
ENSCSEG00000020328	snrpb	70	94.643	ENSCPOG00000039408	SNRPB	79	92.896	Cavia_porcellus
ENSCSEG00000020328	snrpb	53	83.465	ENSCCAG00000035140	-	89	86.275	Cebus_capucinus
ENSCSEG00000020328	snrpb	70	94.643	ENSCCAG00000026002	SNRPB	79	92.896	Cebus_capucinus
ENSCSEG00000020328	snrpb	70	94.643	ENSCATG00000030230	SNRPB	79	92.896	Cercocebus_atys
ENSCSEG00000020328	snrpb	70	94.643	ENSCLAG00000012442	SNRPB	77	92.350	Chinchilla_lanigera
ENSCSEG00000020328	snrpb	70	94.643	ENSCSAG00000010840	SNRPB	79	92.896	Chlorocebus_sabaeus
ENSCSEG00000020328	snrpb	70	96.429	ENSCPBG00000026801	SNRPB	80	93.443	Chrysemys_picta_bellii
ENSCSEG00000020328	snrpb	70	94.643	ENSCANG00000019461	SNRPB	79	92.896	Colobus_angolensis_palliatus
ENSCSEG00000020328	snrpb	70	94.643	ENSCGRG00001023046	Snrpb	79	92.896	Cricetulus_griseus_chok1gshd
ENSCSEG00000020328	snrpb	68	94.479	ENSCGRG00000010423	Snrpb	78	92.571	Cricetulus_griseus_crigri
ENSCSEG00000020328	snrpb	100	97.908	ENSDARG00000011125	snrpb	100	97.908	Danio_rerio
ENSCSEG00000020328	snrpb	70	88.690	ENSDNOG00000007896	-	75	86.339	Dasypus_novemcinctus
ENSCSEG00000020328	snrpb	70	94.643	ENSDNOG00000015545	-	76	92.350	Dasypus_novemcinctus
ENSCSEG00000020328	snrpb	67	94.444	ENSDORG00000029558	Snrpb	77	92.655	Dipodomys_ordii
ENSCSEG00000020328	snrpb	77	62.437	FBgn0262601	SmB	74	69.128	Drosophila_melanogaster
ENSCSEG00000020328	snrpb	70	73.810	ENSETEG00000006830	SNRPB	80	72.678	Echinops_telfairi
ENSCSEG00000020328	snrpb	77	79.235	ENSEBUG00000007467	SNRPB	62	87.919	Eptatretus_burgeri
ENSCSEG00000020328	snrpb	70	94.048	ENSEASG00005012991	SNRPB	79	91.803	Equus_asinus_asinus
ENSCSEG00000020328	snrpb	70	94.643	ENSECAG00000011944	SNRPB	79	92.896	Equus_caballus
ENSCSEG00000020328	snrpb	70	94.643	ENSEEUG00000015568	SNRPB	64	92.350	Erinaceus_europaeus
ENSCSEG00000020328	snrpb	99	97.872	ENSELUG00000014564	snrpb	99	97.872	Esox_lucius
ENSCSEG00000020328	snrpb	70	94.643	ENSFCAG00000034090	-	79	92.896	Felis_catus
ENSCSEG00000020328	snrpb	66	96.250	ENSFALG00000004866	SNRPB	75	93.143	Ficedula_albicollis
ENSCSEG00000020328	snrpb	70	94.643	ENSFDAG00000009937	SNRPB	79	92.896	Fukomys_damarensis
ENSCSEG00000020328	snrpb	70	96.429	ENSGALG00000035421	SNRPN	76	92.896	Gallus_gallus
ENSCSEG00000020328	snrpb	94	96.460	ENSGAFG00000019558	snrpb	99	96.460	Gambusia_affinis
ENSCSEG00000020328	snrpb	100	98.319	ENSGACG00000003262	snrpb	100	98.319	Gasterosteus_aculeatus
ENSCSEG00000020328	snrpb	70	96.429	ENSGAGG00000001308	SNRPB	76	93.443	Gopherus_agassizii
ENSCSEG00000020328	snrpb	70	94.643	ENSGGOG00000016138	SNRPB	79	92.896	Gorilla_gorilla
ENSCSEG00000020328	snrpb	100	98.333	ENSHBUG00000008369	snrpb	100	98.333	Haplochromis_burtoni
ENSCSEG00000020328	snrpb	70	94.643	ENSHGLG00000016241	-	79	92.896	Heterocephalus_glaber_female
ENSCSEG00000020328	snrpb	63	86.000	ENSHGLG00000016505	-	86	81.111	Heterocephalus_glaber_female
ENSCSEG00000020328	snrpb	63	86.000	ENSHGLG00100004178	-	86	81.111	Heterocephalus_glaber_male
ENSCSEG00000020328	snrpb	70	94.643	ENSHGLG00100012877	-	79	92.896	Heterocephalus_glaber_male
ENSCSEG00000020328	snrpb	100	98.739	ENSHCOG00000014888	snrpb	100	98.739	Hippocampus_comes
ENSCSEG00000020328	snrpb	99	98.305	ENSIPUG00000024569	SNRPB	99	98.305	Ictalurus_punctatus
ENSCSEG00000020328	snrpb	89	78.404	ENSSTOG00000027821	-	62	94.853	Ictidomys_tridecemlineatus
ENSCSEG00000020328	snrpb	70	92.857	ENSSTOG00000033664	-	76	90.710	Ictidomys_tridecemlineatus
ENSCSEG00000020328	snrpb	70	94.643	ENSJJAG00000024170	Snrpb	79	92.896	Jaculus_jaculus
ENSCSEG00000020328	snrpb	95	97.807	ENSKMAG00000014494	snrpb	93	97.807	Kryptolebias_marmoratus
ENSCSEG00000020328	snrpb	100	99.160	ENSLBEG00000005678	snrpb	100	99.160	Labrus_bergylta
ENSCSEG00000020328	snrpb	99	95.378	ENSLACG00000011459	SNRPB	99	95.378	Latimeria_chalumnae
ENSCSEG00000020328	snrpb	99	98.729	ENSLOCG00000002687	snrpb	99	98.729	Lepisosteus_oculatus
ENSCSEG00000020328	snrpb	69	89.820	ENSLAFG00000017588	SNRPB	78	88.462	Loxodonta_africana
ENSCSEG00000020328	snrpb	70	94.643	ENSMFAG00000038756	SNRPB	79	92.896	Macaca_fascicularis
ENSCSEG00000020328	snrpb	70	94.643	ENSMMUG00000010050	SNRPB	79	92.896	Macaca_mulatta
ENSCSEG00000020328	snrpb	70	94.643	ENSMNEG00000027954	SNRPB	79	92.896	Macaca_nemestrina
ENSCSEG00000020328	snrpb	70	94.643	ENSMLEG00000022346	SNRPB	79	92.896	Mandrillus_leucophaeus
ENSCSEG00000020328	snrpb	99	98.326	ENSMAMG00000009294	snrpb	97	98.326	Mastacembelus_armatus
ENSCSEG00000020328	snrpb	100	98.333	ENSMZEG00005011856	snrpb	100	98.333	Maylandia_zebra
ENSCSEG00000020328	snrpb	75	83.978	ENSMICG00000015983	-	84	82.514	Microcebus_murinus
ENSCSEG00000020328	snrpb	70	94.643	ENSMICG00000016519	SNRPB	79	92.896	Microcebus_murinus
ENSCSEG00000020328	snrpb	58	78.417	ENSMOCG00000021362	-	76	75.138	Microtus_ochrogaster
ENSCSEG00000020328	snrpb	70	94.048	ENSMOCG00000002892	-	79	92.350	Microtus_ochrogaster
ENSCSEG00000020328	snrpb	95	99.111	ENSMMOG00000013226	snrpb	97	99.111	Mola_mola
ENSCSEG00000020328	snrpb	100	97.500	ENSMALG00000020839	snrpb	81	97.500	Monopterus_albus
ENSCSEG00000020328	snrpb	70	94.643	MGP_CAROLIEiJ_G0024293	Snrpb	74	100.000	Mus_caroli
ENSCSEG00000020328	snrpb	70	94.643	ENSMUSG00000027404	Snrpb	74	100.000	Mus_musculus
ENSCSEG00000020328	snrpb	70	94.643	MGP_PahariEiJ_G0025738	Snrpb	74	100.000	Mus_pahari
ENSCSEG00000020328	snrpb	70	94.643	MGP_SPRETEiJ_G0025213	Snrpb	73	100.000	Mus_spretus
ENSCSEG00000020328	snrpb	70	94.643	ENSMPUG00000009283	SNRPB	79	92.896	Mustela_putorius_furo
ENSCSEG00000020328	snrpb	92	88.235	ENSMLUG00000016951	SNRPB	77	89.305	Myotis_lucifugus
ENSCSEG00000020328	snrpb	70	94.643	ENSNGAG00000012051	Snrpb	79	92.896	Nannospalax_galili
ENSCSEG00000020328	snrpb	95	96.053	ENSNBRG00000006353	snrpb	98	88.327	Neolamprologus_brichardi
ENSCSEG00000020328	snrpb	70	94.643	ENSNLEG00000029067	SNRPB	77	92.308	Nomascus_leucogenys
ENSCSEG00000020328	snrpb	69	94.611	ENSMEUG00000015625	SNRPB	81	92.308	Notamacropus_eugenii
ENSCSEG00000020328	snrpb	70	89.286	ENSODEG00000016060	-	77	87.432	Octodon_degus
ENSCSEG00000020328	snrpb	70	94.643	ENSODEG00000004305	-	79	92.896	Octodon_degus
ENSCSEG00000020328	snrpb	100	98.333	ENSONIG00000000248	snrpb	100	98.333	Oreochromis_niloticus
ENSCSEG00000020328	snrpb	88	90.141	ENSOCUG00000028215	-	76	90.164	Oryctolagus_cuniculus
ENSCSEG00000020328	snrpb	89	88.372	ENSOCUG00000021456	-	76	87.978	Oryctolagus_cuniculus
ENSCSEG00000020328	snrpb	88	65.566	ENSOCUG00000026813	-	78	63.889	Oryctolagus_cuniculus
ENSCSEG00000020328	snrpb	74	88.827	ENSOCUG00000022423	-	92	86.592	Oryctolagus_cuniculus
ENSCSEG00000020328	snrpb	70	94.643	ENSOCUG00000014042	-	76	92.350	Oryctolagus_cuniculus
ENSCSEG00000020328	snrpb	100	97.500	ENSORLG00000021862	snrpb	100	97.500	Oryzias_latipes
ENSCSEG00000020328	snrpb	70	94.643	ENSOGAG00000016149	SNRPB	76	92.350	Otolemur_garnettii
ENSCSEG00000020328	snrpb	70	94.643	ENSOARG00000006740	SNRPB	79	92.896	Ovis_aries
ENSCSEG00000020328	snrpb	70	94.643	ENSPPAG00000036314	SNRPB	79	92.896	Pan_paniscus
ENSCSEG00000020328	snrpb	70	94.643	ENSPPRG00000003233	-	79	92.896	Panthera_pardus
ENSCSEG00000020328	snrpb	69	94.611	ENSPTIG00000007468	SNRPB	79	92.857	Panthera_tigris_altaica
ENSCSEG00000020328	snrpb	70	94.643	ENSPTRG00000013176	SNRPB	79	92.896	Pan_troglodytes
ENSCSEG00000020328	snrpb	70	94.643	ENSPANG00000020362	SNRPB	76	92.350	Papio_anubis
ENSCSEG00000020328	snrpb	99	97.458	ENSPKIG00000002865	snrpb	99	97.458	Paramormyrops_kingsleyae
ENSCSEG00000020328	snrpb	69	96.407	ENSPSIG00000014125	SNRPB	75	93.407	Pelodiscus_sinensis
ENSCSEG00000020328	snrpb	84	96.396	ENSPMGG00000016349	snrpb	95	96.396	Periophthalmus_magnuspinnatus
ENSCSEG00000020328	snrpb	70	94.643	ENSPEMG00000007948	Snrpb	79	92.896	Peromyscus_maniculatus_bairdii
ENSCSEG00000020328	snrpb	69	94.012	ENSPCIG00000004694	SNRPB	76	91.758	Phascolarctos_cinereus
ENSCSEG00000020328	snrpb	99	80.534	ENSPFOG00000011802	snrpb	98	80.534	Poecilia_formosa
ENSCSEG00000020328	snrpb	71	77.720	ENSPLAG00000014130	snrpb	59	98.519	Poecilia_latipinna
ENSCSEG00000020328	snrpb	89	70.755	ENSPREG00000015515	snrpb	62	98.519	Poecilia_reticulata
ENSCSEG00000020328	snrpb	70	94.643	ENSPPYG00000010841	SNRPB	79	92.896	Pongo_abelii
ENSCSEG00000020328	snrpb	70	94.643	ENSPCOG00000013686	SNRPB	79	92.896	Propithecus_coquereli
ENSCSEG00000020328	snrpb	70	94.048	ENSPVAG00000017013	SNRPB	64	91.257	Pteropus_vampyrus
ENSCSEG00000020328	snrpb	100	98.333	ENSPNYG00000014788	snrpb	100	98.333	Pundamilia_nyererei
ENSCSEG00000020328	snrpb	99	98.305	ENSPNAG00000016126	snrpb	99	98.305	Pygocentrus_nattereri
ENSCSEG00000020328	snrpb	70	94.643	ENSRNOG00000006961	Snrpb	73	100.000	Rattus_norvegicus
ENSCSEG00000020328	snrpb	70	94.643	ENSRBIG00000040505	SNRPB	79	93.407	Rhinopithecus_bieti
ENSCSEG00000020328	snrpb	70	94.643	ENSRROG00000036094	SNRPB	79	92.896	Rhinopithecus_roxellana
ENSCSEG00000020328	snrpb	70	94.643	ENSSBOG00000027310	SNRPB	79	92.896	Saimiri_boliviensis_boliviensis
ENSCSEG00000020328	snrpb	70	95.238	ENSSHAG00000010394	SNRPB	76	92.896	Sarcophilus_harrisii
ENSCSEG00000020328	snrpb	99	97.034	ENSSFOG00015002870	snrpb	99	97.034	Scleropages_formosus
ENSCSEG00000020328	snrpb	100	98.739	ENSSMAG00000006766	snrpb	100	98.739	Scophthalmus_maximus
ENSCSEG00000020328	snrpb	100	98.333	ENSSDUG00000018539	snrpb	100	98.333	Seriola_dumerili
ENSCSEG00000020328	snrpb	100	98.333	ENSSLDG00000022391	snrpb	100	98.333	Seriola_lalandi_dorsalis
ENSCSEG00000020328	snrpb	69	79.641	ENSSARG00000003084	SNRPB	78	78.571	Sorex_araneus
ENSCSEG00000020328	snrpb	69	96.407	ENSSPUG00000015659	SNRPB	76	93.407	Sphenodon_punctatus
ENSCSEG00000020328	snrpb	100	98.333	ENSSPAG00000021992	snrpb	100	98.333	Stegastes_partitus
ENSCSEG00000020328	snrpb	95	73.799	ENSSSCG00000011966	-	77	69.945	Sus_scrofa
ENSCSEG00000020328	snrpb	70	94.643	ENSSSCG00000040857	-	79	92.896	Sus_scrofa
ENSCSEG00000020328	snrpb	72	82.081	ENSTGUG00000005684	SNRPB	59	97.143	Taeniopygia_guttata
ENSCSEG00000020328	snrpb	95	98.673	ENSTRUG00000023094	snrpb	99	98.673	Takifugu_rubripes
ENSCSEG00000020328	snrpb	100	98.739	ENSTNIG00000002991	snrpb	100	98.739	Tetraodon_nigroviridis
ENSCSEG00000020328	snrpb	70	94.643	ENSUAMG00000005984	-	88	91.803	Ursus_americanus
ENSCSEG00000020328	snrpb	90	78.037	ENSUMAG00000002123	-	65	93.571	Ursus_maritimus
ENSCSEG00000020328	snrpb	93	75.330	ENSVVUG00000010086	-	78	74.725	Vulpes_vulpes
ENSCSEG00000020328	snrpb	70	94.048	ENSVVUG00000025654	-	76	91.803	Vulpes_vulpes
ENSCSEG00000020328	snrpb	63	98.000	ENSXETG00000027266	snrpb	77	92.350	Xenopus_tropicalis
ENSCSEG00000020328	snrpb	89	67.136	ENSXMAG00000028767	snrpb	58	98.519	Xiphophorus_maculatus