EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000020352 (Gene tree)
Gene ID: 103386825
Gene Symbol: polr2j
Alias: rpb11|zgc:110005
Full Name: RNA polymerase II subunit J
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 5568 bases
Position: chr11:20183745-20189312
Accession: 103386825
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000031748	RNA_pol_L_2	PF13656.6	4.8e-29	1	1
ENSCSEP00000031748	RNA_pol_L	PF01193.24	9.5e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000032158	-	4833	XM_008321239	ENSCSEP00000031748	117 (aa)	XP_008319461	UPI000497403E

Gene Model

Click here to download ENSCSEG00000020352's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000020352's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000020352	polr2j	63	33.784	ENSCSEG00000018268	polr1d	83	30.928

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000020352	polr2j	91	91.589	ENSG00000228049	POLR2J2	94	88.991	Homo_sapiens
ENSCSEG00000020352	polr2j	100	94.017	ENSG00000005075	POLR2J	100	94.017	Homo_sapiens
ENSCSEG00000020352	polr2j	100	97.436	ENSAPOG00000019538	polr2j	100	97.436	Acanthochromis_polyacanthus
ENSCSEG00000020352	polr2j	100	86.614	ENSAMEG00000015480	-	100	86.614	Ailuropoda_melanoleuca
ENSCSEG00000020352	polr2j	93	75.455	ENSACIG00000014549	POLR2J2	91	75.455	Amphilophus_citrinellus
ENSCSEG00000020352	polr2j	100	96.581	ENSAOCG00000006937	polr2j	100	96.581	Amphiprion_ocellaris
ENSCSEG00000020352	polr2j	100	97.436	ENSAPEG00000021761	polr2j	100	97.436	Amphiprion_percula
ENSCSEG00000020352	polr2j	100	97.436	ENSATEG00000009731	polr2j	100	97.436	Anabas_testudineus
ENSCSEG00000020352	polr2j	100	97.436	ENSATEG00000013312	-	100	97.436	Anabas_testudineus
ENSCSEG00000020352	polr2j	86	91.089	ENSAPLG00000003744	-	100	91.089	Anas_platyrhynchos
ENSCSEG00000020352	polr2j	100	86.325	ENSACAG00000000251	POLR2J	100	86.325	Anolis_carolinensis
ENSCSEG00000020352	polr2j	100	97.436	ENSACLG00000014564	polr2j	100	97.436	Astatotilapia_calliptera
ENSCSEG00000020352	polr2j	100	94.872	ENSAMXG00000007517	polr2j	100	94.872	Astyanax_mexicanus
ENSCSEG00000020352	polr2j	62	61.644	ENSBTAG00000048046	-	61	61.644	Bos_taurus
ENSCSEG00000020352	polr2j	94	68.182	WBGene00012187	rpb-11	89	68.182	Caenorhabditis_elegans
ENSCSEG00000020352	polr2j	100	94.017	ENSCJAG00000016203	-	100	94.017	Callithrix_jacchus
ENSCSEG00000020352	polr2j	100	94.017	ENSCAFG00000013683	-	100	94.017	Canis_familiaris
ENSCSEG00000020352	polr2j	85	92.929	ENSTSYG00000029243	-	85	92.929	Carlito_syrichta
ENSCSEG00000020352	polr2j	100	94.017	ENSCPOG00000001401	-	100	94.017	Cavia_porcellus
ENSCSEG00000020352	polr2j	100	72.650	ENSCATG00000016595	-	97	83.696	Cercocebus_atys
ENSCSEG00000020352	polr2j	100	94.017	ENSCLAG00000005238	-	100	94.017	Chinchilla_lanigera
ENSCSEG00000020352	polr2j	100	94.017	ENSCSAG00000018092	-	100	94.017	Chlorocebus_sabaeus
ENSCSEG00000020352	polr2j	100	81.197	ENSCING00000020531	-	100	81.197	Ciona_intestinalis
ENSCSEG00000020352	polr2j	100	79.487	ENSCSAVG00000006948	-	100	79.487	Ciona_savignyi
ENSCSEG00000020352	polr2j	100	94.017	ENSCGRG00001012814	Polr2j	100	94.017	Cricetulus_griseus_chok1gshd
ENSCSEG00000020352	polr2j	100	79.487	ENSCGRG00000008433	Polr2j	100	79.487	Cricetulus_griseus_crigri
ENSCSEG00000020352	polr2j	100	96.581	ENSCVAG00000014267	polr2j	100	96.581	Cyprinodon_variegatus
ENSCSEG00000020352	polr2j	100	94.017	ENSDARG00000035146	polr2j	100	94.017	Danio_rerio
ENSCSEG00000020352	polr2j	100	94.017	ENSDORG00000005934	Polr2j	100	94.017	Dipodomys_ordii
ENSCSEG00000020352	polr2j	98	79.130	FBgn0032634	Rpb11	98	79.130	Drosophila_melanogaster
ENSCSEG00000020352	polr2j	100	64.957	ENSEBUG00000016100	polr2j	100	64.957	Eptatretus_burgeri
ENSCSEG00000020352	polr2j	100	94.017	ENSEASG00005016864	-	100	94.017	Equus_asinus_asinus
ENSCSEG00000020352	polr2j	100	94.872	ENSELUG00000012822	polr2j	100	94.872	Esox_lucius
ENSCSEG00000020352	polr2j	100	94.017	ENSFCAG00000000377	-	100	94.017	Felis_catus
ENSCSEG00000020352	polr2j	100	94.017	ENSFALG00000009523	POLR2J	100	94.017	Ficedula_albicollis
ENSCSEG00000020352	polr2j	100	94.017	ENSFDAG00000010507	-	100	94.017	Fukomys_damarensis
ENSCSEG00000020352	polr2j	100	97.436	ENSFHEG00000006625	polr2j	100	97.436	Fundulus_heteroclitus
ENSCSEG00000020352	polr2j	100	94.872	ENSGMOG00000018207	polr2j	100	94.872	Gadus_morhua
ENSCSEG00000020352	polr2j	100	94.017	ENSGALG00000030808	-	100	94.017	Gallus_gallus
ENSCSEG00000020352	polr2j	100	97.436	ENSGAFG00000019555	polr2j	100	97.436	Gambusia_affinis
ENSCSEG00000020352	polr2j	100	97.436	ENSGACG00000003310	polr2j	100	97.436	Gasterosteus_aculeatus
ENSCSEG00000020352	polr2j	97	84.071	ENSGAGG00000018304	-	96	84.071	Gopherus_agassizii
ENSCSEG00000020352	polr2j	85	88.000	ENSGGOG00000004519	-	80	88.000	Gorilla_gorilla
ENSCSEG00000020352	polr2j	100	97.436	ENSHBUG00000008467	polr2j	100	97.436	Haplochromis_burtoni
ENSCSEG00000020352	polr2j	100	94.017	ENSHGLG00000013598	POLR2J	100	94.017	Heterocephalus_glaber_female
ENSCSEG00000020352	polr2j	100	94.017	ENSHGLG00100011242	POLR2J	100	94.017	Heterocephalus_glaber_male
ENSCSEG00000020352	polr2j	100	94.872	ENSHCOG00000014827	polr2j	68	94.872	Hippocampus_comes
ENSCSEG00000020352	polr2j	100	94.872	ENSIPUG00000023960	polr2j	100	94.872	Ictalurus_punctatus
ENSCSEG00000020352	polr2j	100	94.017	ENSSTOG00000006377	POLR2J	100	94.017	Ictidomys_tridecemlineatus
ENSCSEG00000020352	polr2j	100	94.017	ENSJJAG00000013854	-	100	94.017	Jaculus_jaculus
ENSCSEG00000020352	polr2j	100	88.889	ENSJJAG00000018834	-	100	88.889	Jaculus_jaculus
ENSCSEG00000020352	polr2j	100	97.436	ENSKMAG00000014581	polr2j	79	97.436	Kryptolebias_marmoratus
ENSCSEG00000020352	polr2j	100	96.581	ENSLBEG00000005885	polr2j	100	96.581	Labrus_bergylta
ENSCSEG00000020352	polr2j	100	94.872	ENSLOCG00000001885	polr2j	89	94.872	Lepisosteus_oculatus
ENSCSEG00000020352	polr2j	100	94.017	ENSLAFG00000021507	-	100	94.017	Loxodonta_africana
ENSCSEG00000020352	polr2j	100	84.615	ENSMMUG00000012019	POLR2J	100	84.615	Macaca_mulatta
ENSCSEG00000020352	polr2j	100	96.581	ENSMAMG00000009374	polr2j	100	96.581	Mastacembelus_armatus
ENSCSEG00000020352	polr2j	100	97.436	ENSMZEG00005011932	polr2j	100	97.436	Maylandia_zebra
ENSCSEG00000020352	polr2j	100	94.017	ENSMGAG00000003534	POLR2J	100	94.017	Meleagris_gallopavo
ENSCSEG00000020352	polr2j	100	94.017	ENSMAUG00000013049	Polr2j	100	94.017	Mesocricetus_auratus
ENSCSEG00000020352	polr2j	80	88.298	ENSMICG00000026811	-	94	88.298	Microcebus_murinus
ENSCSEG00000020352	polr2j	100	94.017	ENSMOCG00000001294	Polr2j	100	94.017	Microtus_ochrogaster
ENSCSEG00000020352	polr2j	100	95.726	ENSMMOG00000013265	polr2j	100	95.726	Mola_mola
ENSCSEG00000020352	polr2j	100	85.938	ENSMODG00000013617	-	100	85.938	Monodelphis_domestica
ENSCSEG00000020352	polr2j	100	96.581	ENSMALG00000020749	polr2j	100	96.581	Monopterus_albus
ENSCSEG00000020352	polr2j	100	94.017	MGP_CAROLIEiJ_G0027851	Polr2j	100	94.017	Mus_caroli
ENSCSEG00000020352	polr2j	100	94.017	ENSMUSG00000039771	Polr2j	100	94.017	Mus_musculus
ENSCSEG00000020352	polr2j	100	94.017	MGP_PahariEiJ_G0024434	Polr2j	100	94.017	Mus_pahari
ENSCSEG00000020352	polr2j	100	94.017	MGP_SPRETEiJ_G0028853	Polr2j	100	94.017	Mus_spretus
ENSCSEG00000020352	polr2j	100	94.017	ENSMLUG00000010467	POLR2J	100	94.017	Myotis_lucifugus
ENSCSEG00000020352	polr2j	100	94.017	ENSNGAG00000023412	Polr2j	100	94.017	Nannospalax_galili
ENSCSEG00000020352	polr2j	66	94.805	ENSNBRG00000006580	polr2j	59	94.805	Neolamprologus_brichardi
ENSCSEG00000020352	polr2j	100	71.795	ENSODEG00000008559	-	100	71.795	Octodon_degus
ENSCSEG00000020352	polr2j	100	94.017	ENSODEG00000015648	-	100	94.017	Octodon_degus
ENSCSEG00000020352	polr2j	100	97.436	ENSONIG00000000259	polr2j	100	97.436	Oreochromis_niloticus
ENSCSEG00000020352	polr2j	100	91.453	ENSOANG00000020912	POLR2J	100	91.453	Ornithorhynchus_anatinus
ENSCSEG00000020352	polr2j	100	86.614	ENSOCUG00000023609	POLR2J	100	86.614	Oryctolagus_cuniculus
ENSCSEG00000020352	polr2j	100	97.436	ENSORLG00000029046	polr2j	83	97.436	Oryzias_latipes
ENSCSEG00000020352	polr2j	100	97.436	ENSORLG00020007625	polr2j	83	97.436	Oryzias_latipes_hni
ENSCSEG00000020352	polr2j	100	97.436	ENSORLG00015003457	polr2j	83	97.436	Oryzias_latipes_hsok
ENSCSEG00000020352	polr2j	100	97.436	ENSOMEG00000002097	polr2j	100	97.436	Oryzias_melastigma
ENSCSEG00000020352	polr2j	100	70.312	ENSOGAG00000008250	-	100	70.312	Otolemur_garnettii
ENSCSEG00000020352	polr2j	100	94.017	ENSOARG00000014204	-	98	94.017	Ovis_aries
ENSCSEG00000020352	polr2j	100	94.017	ENSPPRG00000012439	-	100	94.017	Panthera_pardus
ENSCSEG00000020352	polr2j	97	85.088	ENSPTIG00000018714	-	100	90.291	Panthera_tigris_altaica
ENSCSEG00000020352	polr2j	85	92.000	ENSPSIG00000010173	-	100	92.000	Pelodiscus_sinensis
ENSCSEG00000020352	polr2j	100	97.436	ENSPMGG00000021256	polr2j	100	97.436	Periophthalmus_magnuspinnatus
ENSCSEG00000020352	polr2j	100	94.017	ENSPEMG00000015733	Polr2j	100	94.017	Peromyscus_maniculatus_bairdii
ENSCSEG00000020352	polr2j	100	94.017	ENSPCIG00000009026	-	100	94.017	Phascolarctos_cinereus
ENSCSEG00000020352	polr2j	100	97.436	ENSPFOG00000012001	polr2j	99	97.436	Poecilia_formosa
ENSCSEG00000020352	polr2j	100	97.436	ENSPLAG00000014075	polr2j	100	97.436	Poecilia_latipinna
ENSCSEG00000020352	polr2j	100	97.436	ENSPMEG00000020585	polr2j	100	97.436	Poecilia_mexicana
ENSCSEG00000020352	polr2j	100	97.436	ENSPREG00000015255	polr2j	100	97.436	Poecilia_reticulata
ENSCSEG00000020352	polr2j	100	94.017	ENSPCOG00000024573	-	100	94.017	Propithecus_coquereli
ENSCSEG00000020352	polr2j	99	87.931	ENSPVAG00000017770	-	66	87.931	Pteropus_vampyrus
ENSCSEG00000020352	polr2j	100	97.436	ENSPNYG00000014832	polr2j	100	97.436	Pundamilia_nyererei
ENSCSEG00000020352	polr2j	100	92.308	ENSPNAG00000016595	polr2j	100	92.308	Pygocentrus_nattereri
ENSCSEG00000020352	polr2j	100	94.017	ENSRNOG00000001430	Polr2j	100	94.017	Rattus_norvegicus
ENSCSEG00000020352	polr2j	100	94.017	ENSSBOG00000025579	-	100	94.017	Saimiri_boliviensis_boliviensis
ENSCSEG00000020352	polr2j	59	97.101	ENSSHAG00000010443	-	81	97.101	Sarcophilus_harrisii
ENSCSEG00000020352	polr2j	93	92.661	ENSSFOG00015003371	polr2j	83	92.661	Scleropages_formosus
ENSCSEG00000020352	polr2j	100	97.436	ENSSMAG00000006729	polr2j	100	97.436	Scophthalmus_maximus
ENSCSEG00000020352	polr2j	100	97.436	ENSSDUG00000018490	polr2j	100	97.436	Seriola_dumerili
ENSCSEG00000020352	polr2j	100	97.436	ENSSLDG00000022354	polr2j	100	97.436	Seriola_lalandi_dorsalis
ENSCSEG00000020352	polr2j	100	94.017	ENSSPUG00000010802	-	100	94.017	Sphenodon_punctatus
ENSCSEG00000020352	polr2j	100	97.436	ENSSPAG00000021953	polr2j	100	97.436	Stegastes_partitus
ENSCSEG00000020352	polr2j	100	77.778	ENSSSCG00000003703	-	83	77.778	Sus_scrofa
ENSCSEG00000020352	polr2j	100	94.017	ENSSSCG00000007688	-	100	94.017	Sus_scrofa
ENSCSEG00000020352	polr2j	59	97.101	ENSTGUG00000004510	-	100	97.101	Taeniopygia_guttata
ENSCSEG00000020352	polr2j	85	92.000	ENSTGUG00000004501	-	100	92.000	Taeniopygia_guttata
ENSCSEG00000020352	polr2j	100	96.581	ENSTRUG00000020842	polr2j	100	96.581	Takifugu_rubripes
ENSCSEG00000020352	polr2j	100	95.726	ENSTNIG00000002994	polr2j	100	95.726	Tetraodon_nigroviridis
ENSCSEG00000020352	polr2j	91	78.505	ENSTBEG00000005797	-	70	78.505	Tupaia_belangeri
ENSCSEG00000020352	polr2j	100	94.017	ENSUAMG00000011310	-	100	94.017	Ursus_americanus
ENSCSEG00000020352	polr2j	100	94.017	ENSUMAG00000012594	-	100	94.017	Ursus_maritimus
ENSCSEG00000020352	polr2j	100	94.017	ENSXETG00000001108	polr2j	100	94.017	Xenopus_tropicalis
ENSCSEG00000020352	polr2j	100	97.436	ENSXMAG00000012422	polr2j	100	97.436	Xiphophorus_maculatus