EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000020434 (Gene tree)
Gene ID: 103382139
Gene Symbol: xrcc6
Alias: Ku autoantigen|Ku70|g22p1|wu:fi87b06|zgc:64131
Full Name: X-ray repair cross complementing 6
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 9970 bases
Position: chr8:12244085-12254054
Accession: 103382139
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000031863	SAP	PF02037.27	4.6e-08	1	1
ENSCSEP00000031858	SAP	PF02037.27	4.7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000032269	-	2810	-	ENSCSEP00000031858	623 (aa)	-	-
ENSCSET00000032274	-	6211	XM_008314819	ENSCSEP00000031863	610 (aa)	XP_008313041	UPI00049541C3

Gene Model

Click here to download ENSCSEG00000020434's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000020434's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000020434	xrcc6	99	56.209	ENSG00000196419	XRCC6	99	56.373	Homo_sapiens
ENSCSEG00000020434	xrcc6	99	81.445	ENSAPOG00000012704	xrcc6	100	81.773	Acanthochromis_polyacanthus
ENSCSEG00000020434	xrcc6	100	81.148	ENSACIG00000021277	xrcc6	100	81.148	Amphilophus_citrinellus
ENSCSEG00000020434	xrcc6	100	82.295	ENSAOCG00000021344	xrcc6	100	82.295	Amphiprion_ocellaris
ENSCSEG00000020434	xrcc6	100	82.295	ENSAPEG00000020712	xrcc6	100	82.295	Amphiprion_percula
ENSCSEG00000020434	xrcc6	100	81.803	ENSATEG00000007119	xrcc6	100	81.803	Anabas_testudineus
ENSCSEG00000020434	xrcc6	90	57.713	ENSAPLG00000004469	XRCC6	99	57.713	Anas_platyrhynchos
ENSCSEG00000020434	xrcc6	99	49.261	ENSANAG00000020017	-	90	58.621	Aotus_nancymaae
ENSCSEG00000020434	xrcc6	99	47.967	ENSANAG00000023445	-	94	53.488	Aotus_nancymaae
ENSCSEG00000020434	xrcc6	99	56.046	ENSANAG00000018684	XRCC6	94	61.290	Aotus_nancymaae
ENSCSEG00000020434	xrcc6	99	49.346	ENSANAG00000035230	-	99	49.346	Aotus_nancymaae
ENSCSEG00000020434	xrcc6	100	80.492	ENSACLG00000018608	xrcc6	100	80.492	Astatotilapia_calliptera
ENSCSEG00000020434	xrcc6	99	74.671	ENSAMXG00000007545	xrcc6	99	74.671	Astyanax_mexicanus
ENSCSEG00000020434	xrcc6	99	56.046	ENSCJAG00000045512	XRCC6	99	56.046	Callithrix_jacchus
ENSCSEG00000020434	xrcc6	99	55.229	ENSTSYG00000011348	XRCC6	99	55.556	Carlito_syrichta
ENSCSEG00000020434	xrcc6	93	56.746	ENSCCAG00000030468	-	99	56.746	Cebus_capucinus
ENSCSEG00000020434	xrcc6	99	52.941	ENSCCAG00000030041	-	95	52.778	Cebus_capucinus
ENSCSEG00000020434	xrcc6	99	45.990	ENSCCAG00000035711	-	99	45.990	Cebus_capucinus
ENSCSEG00000020434	xrcc6	99	46.305	ENSCCAG00000037663	-	97	46.305	Cebus_capucinus
ENSCSEG00000020434	xrcc6	99	56.373	ENSCATG00000042366	XRCC6	99	56.536	Cercocebus_atys
ENSCSEG00000020434	xrcc6	99	56.137	ENSCLAG00000016669	XRCC6	99	56.137	Chinchilla_lanigera
ENSCSEG00000020434	xrcc6	99	56.373	ENSCSAG00000005784	XRCC6	99	56.536	Chlorocebus_sabaeus
ENSCSEG00000020434	xrcc6	99	57.026	ENSCPBG00000020535	XRCC6	99	57.026	Chrysemys_picta_bellii
ENSCSEG00000020434	xrcc6	98	33.444	ENSCING00000000633	-	95	33.505	Ciona_intestinalis
ENSCSEG00000020434	xrcc6	99	56.373	ENSCANG00000031032	XRCC6	99	56.536	Colobus_angolensis_palliatus
ENSCSEG00000020434	xrcc6	99	51.475	ENSCGRG00001019029	Xrcc6	99	51.475	Cricetulus_griseus_chok1gshd
ENSCSEG00000020434	xrcc6	99	55.410	ENSCGRG00000001528	Xrcc6	99	55.410	Cricetulus_griseus_crigri
ENSCSEG00000020434	xrcc6	100	77.869	ENSCVAG00000002189	xrcc6	100	77.869	Cyprinodon_variegatus
ENSCSEG00000020434	xrcc6	99	72.131	ENSDARG00000071551	xrcc6	99	72.131	Danio_rerio
ENSCSEG00000020434	xrcc6	78	52.415	ENSETEG00000015333	-	78	52.415	Echinops_telfairi
ENSCSEG00000020434	xrcc6	99	55.319	ENSEASG00005001514	XRCC6	99	55.974	Equus_asinus_asinus
ENSCSEG00000020434	xrcc6	99	55.646	ENSECAG00000017563	XRCC6	99	56.283	Equus_caballus
ENSCSEG00000020434	xrcc6	100	70.492	ENSELUG00000020301	xrcc6	100	70.492	Esox_lucius
ENSCSEG00000020434	xrcc6	99	58.049	ENSFALG00000011908	XRCC6	97	58.211	Ficedula_albicollis
ENSCSEG00000020434	xrcc6	100	79.508	ENSFHEG00000016833	xrcc6	100	79.508	Fundulus_heteroclitus
ENSCSEG00000020434	xrcc6	99	66.124	ENSGMOG00000013524	xrcc6	100	65.635	Gadus_morhua
ENSCSEG00000020434	xrcc6	96	65.000	ENSGALG00000011932	XRCC6	91	65.000	Gallus_gallus
ENSCSEG00000020434	xrcc6	100	77.377	ENSGAFG00000008130	xrcc6	100	77.541	Gambusia_affinis
ENSCSEG00000020434	xrcc6	99	77.850	ENSGACG00000004868	xrcc6	99	78.339	Gasterosteus_aculeatus
ENSCSEG00000020434	xrcc6	99	57.026	ENSGAGG00000017518	XRCC6	99	57.026	Gopherus_agassizii
ENSCSEG00000020434	xrcc6	99	56.209	ENSGGOG00000015885	XRCC6	96	61.842	Gorilla_gorilla
ENSCSEG00000020434	xrcc6	93	80.565	ENSHBUG00000023281	xrcc6	100	80.565	Haplochromis_burtoni
ENSCSEG00000020434	xrcc6	99	55.410	ENSHGLG00000018078	XRCC6	99	55.246	Heterocephalus_glaber_female
ENSCSEG00000020434	xrcc6	99	55.410	ENSHGLG00100011264	XRCC6	99	55.246	Heterocephalus_glaber_male
ENSCSEG00000020434	xrcc6	100	74.262	ENSHCOG00000009821	xrcc6	100	74.262	Hippocampus_comes
ENSCSEG00000020434	xrcc6	99	72.906	ENSIPUG00000000767	xrcc6	99	73.026	Ictalurus_punctatus
ENSCSEG00000020434	xrcc6	99	55.810	ENSSTOG00000009490	XRCC6	99	56.137	Ictidomys_tridecemlineatus
ENSCSEG00000020434	xrcc6	99	51.391	ENSJJAG00000017136	Xrcc6	99	52.288	Jaculus_jaculus
ENSCSEG00000020434	xrcc6	99	79.475	ENSKMAG00000002141	xrcc6	99	79.475	Kryptolebias_marmoratus
ENSCSEG00000020434	xrcc6	99	78.618	ENSLBEG00000002691	xrcc6	99	78.618	Labrus_bergylta
ENSCSEG00000020434	xrcc6	83	59.406	ENSLOCG00000011533	xrcc6	99	59.406	Lepisosteus_oculatus
ENSCSEG00000020434	xrcc6	99	56.373	ENSMFAG00000003352	XRCC6	95	61.395	Macaca_fascicularis
ENSCSEG00000020434	xrcc6	99	56.373	ENSMMUG00000001856	XRCC6	99	56.536	Macaca_mulatta
ENSCSEG00000020434	xrcc6	99	56.373	ENSMNEG00000035076	XRCC6	99	56.536	Macaca_nemestrina
ENSCSEG00000020434	xrcc6	99	56.373	ENSMLEG00000019869	XRCC6	99	56.536	Mandrillus_leucophaeus
ENSCSEG00000020434	xrcc6	96	79.216	ENSMAMG00000003405	xrcc6	97	79.216	Mastacembelus_armatus
ENSCSEG00000020434	xrcc6	100	79.378	ENSMAMG00000003368	xrcc6	100	79.378	Mastacembelus_armatus
ENSCSEG00000020434	xrcc6	100	80.328	ENSMZEG00005028080	xrcc6	100	80.328	Maylandia_zebra
ENSCSEG00000020434	xrcc6	99	56.078	ENSMGAG00000012146	XRCC6	99	56.240	Meleagris_gallopavo
ENSCSEG00000020434	xrcc6	99	55.902	ENSMAUG00000017340	Xrcc6	99	55.902	Mesocricetus_auratus
ENSCSEG00000020434	xrcc6	99	55.246	ENSMOCG00000015717	Xrcc6	99	55.574	Microtus_ochrogaster
ENSCSEG00000020434	xrcc6	100	77.213	ENSMMOG00000003536	xrcc6	99	77.213	Mola_mola
ENSCSEG00000020434	xrcc6	100	81.148	ENSMALG00000013912	xrcc6	96	80.945	Monopterus_albus
ENSCSEG00000020434	xrcc6	99	53.279	MGP_CAROLIEiJ_G0020067	Xrcc6	99	53.279	Mus_caroli
ENSCSEG00000020434	xrcc6	99	56.721	ENSMUSG00000022471	Xrcc6	99	60.456	Mus_musculus
ENSCSEG00000020434	xrcc6	99	56.721	MGP_PahariEiJ_G0020069	Xrcc6	99	56.721	Mus_pahari
ENSCSEG00000020434	xrcc6	96	57.192	MGP_SPRETEiJ_G0020967	Xrcc6	99	57.192	Mus_spretus
ENSCSEG00000020434	xrcc6	99	55.246	ENSNGAG00000013750	Xrcc6	99	55.246	Nannospalax_galili
ENSCSEG00000020434	xrcc6	100	80.492	ENSNBRG00000004125	xrcc6	100	80.492	Neolamprologus_brichardi
ENSCSEG00000020434	xrcc6	96	57.363	ENSOPRG00000002386	XRCC6	99	57.363	Ochotona_princeps
ENSCSEG00000020434	xrcc6	99	55.646	ENSODEG00000015847	XRCC6	99	55.810	Octodon_degus
ENSCSEG00000020434	xrcc6	100	80.000	ENSONIG00000019715	xrcc6	100	80.000	Oreochromis_niloticus
ENSCSEG00000020434	xrcc6	68	58.554	ENSOANG00000011328	XRCC6	99	58.554	Ornithorhynchus_anatinus
ENSCSEG00000020434	xrcc6	99	55.319	ENSOCUG00000006948	XRCC6	99	55.646	Oryctolagus_cuniculus
ENSCSEG00000020434	xrcc6	100	79.214	ENSORLG00020007820	xrcc6	100	79.214	Oryzias_latipes_hni
ENSCSEG00000020434	xrcc6	100	79.051	ENSORLG00015006406	xrcc6	100	79.051	Oryzias_latipes_hsok
ENSCSEG00000020434	xrcc6	100	79.051	ENSOMEG00000008998	xrcc6	100	79.051	Oryzias_melastigma
ENSCSEG00000020434	xrcc6	99	55.483	ENSOGAG00000008821	XRCC6	99	55.646	Otolemur_garnettii
ENSCSEG00000020434	xrcc6	89	58.807	ENSPPAG00000037167	XRCC6	99	58.807	Pan_paniscus
ENSCSEG00000020434	xrcc6	99	56.209	ENSPTRG00000022548	XRCC6	99	57.265	Pan_troglodytes
ENSCSEG00000020434	xrcc6	99	56.209	ENSPTRG00000045824	XRCC6	99	57.265	Pan_troglodytes
ENSCSEG00000020434	xrcc6	99	56.209	ENSPANG00000001252	XRCC6	99	62.069	Papio_anubis
ENSCSEG00000020434	xrcc6	99	67.270	ENSPKIG00000003974	xrcc6	99	67.270	Paramormyrops_kingsleyae
ENSCSEG00000020434	xrcc6	99	78.738	ENSPMGG00000014220	xrcc6	100	79.734	Periophthalmus_magnuspinnatus
ENSCSEG00000020434	xrcc6	99	54.754	ENSPEMG00000023446	Xrcc6	99	54.754	Peromyscus_maniculatus_bairdii
ENSCSEG00000020434	xrcc6	99	55.974	ENSPCIG00000026409	XRCC6	99	55.810	Phascolarctos_cinereus
ENSCSEG00000020434	xrcc6	100	79.672	ENSPFOG00000017173	xrcc6	100	79.672	Poecilia_formosa
ENSCSEG00000020434	xrcc6	100	79.344	ENSPLAG00000000562	xrcc6	100	79.344	Poecilia_latipinna
ENSCSEG00000020434	xrcc6	100	79.180	ENSPMEG00000018478	xrcc6	100	79.180	Poecilia_mexicana
ENSCSEG00000020434	xrcc6	100	79.412	ENSPREG00000020957	xrcc6	95	78.905	Poecilia_reticulata
ENSCSEG00000020434	xrcc6	99	49.510	ENSPPYG00000011876	XRCC6	99	49.673	Pongo_abelii
ENSCSEG00000020434	xrcc6	99	54.918	ENSPVAG00000001168	XRCC6	99	54.918	Pteropus_vampyrus
ENSCSEG00000020434	xrcc6	100	80.492	ENSPNYG00000003815	xrcc6	100	76.599	Pundamilia_nyererei
ENSCSEG00000020434	xrcc6	99	56.393	ENSRNOG00000006392	Xrcc6	99	56.557	Rattus_norvegicus
ENSCSEG00000020434	xrcc6	99	52.288	ENSRBIG00000039794	XRCC6	99	53.162	Rhinopithecus_bieti
ENSCSEG00000020434	xrcc6	99	56.373	ENSRROG00000030297	XRCC6	94	61.751	Rhinopithecus_roxellana
ENSCSEG00000020434	xrcc6	67	51.834	ENSSBOG00000024724	-	99	51.834	Saimiri_boliviensis_boliviensis
ENSCSEG00000020434	xrcc6	99	55.719	ENSSHAG00000010790	XRCC6	99	55.556	Sarcophilus_harrisii
ENSCSEG00000020434	xrcc6	99	67.928	ENSSFOG00015014409	xrcc6	99	67.928	Scleropages_formosus
ENSCSEG00000020434	xrcc6	100	82.951	ENSSMAG00000006496	xrcc6	100	82.951	Scophthalmus_maximus
ENSCSEG00000020434	xrcc6	100	83.115	ENSSDUG00000007542	xrcc6	100	83.115	Seriola_dumerili
ENSCSEG00000020434	xrcc6	100	82.787	ENSSLDG00000009974	xrcc6	100	82.787	Seriola_lalandi_dorsalis
ENSCSEG00000020434	xrcc6	99	57.774	ENSSPUG00000012086	XRCC6	99	57.938	Sphenodon_punctatus
ENSCSEG00000020434	xrcc6	100	82.951	ENSSPAG00000015199	xrcc6	100	82.951	Stegastes_partitus
ENSCSEG00000020434	xrcc6	96	57.751	ENSTGUG00000009852	-	95	57.751	Taeniopygia_guttata
ENSCSEG00000020434	xrcc6	99	75.534	ENSTRUG00000017070	xrcc6	99	75.534	Takifugu_rubripes
ENSCSEG00000020434	xrcc6	96	73.773	ENSTNIG00000012947	xrcc6	99	73.773	Tetraodon_nigroviridis
ENSCSEG00000020434	xrcc6	96	53.253	ENSTBEG00000011736	XRCC6	99	53.253	Tupaia_belangeri
ENSCSEG00000020434	xrcc6	99	46.382	ENSTTRG00000006749	XRCC6	99	47.204	Tursiops_truncatus
ENSCSEG00000020434	xrcc6	100	79.180	ENSXMAG00000009691	xrcc6	100	79.180	Xiphophorus_maculatus