EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000021285 (Gene tree)
Gene ID: 103396659
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 12803 bases
Position: chr20:12685492-12698294
Accession: 103396659
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000033156	XRN_N	PF03159.18	2.8e-96	1	1
ENSCSEP00000033158	XRN_N	PF03159.18	8.4e-48	1	1
ENSCSEP00000033157	XRN_N	PF03159.18	5.9e-44	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000033583	-	4857	XM_008334838	ENSCSEP00000033156	1618 (aa)	XP_008333060	-
ENSCSET00000033584	-	336	-	ENSCSEP00000033157	111 (aa)	-	-
ENSCSET00000033585	-	1446	-	ENSCSEP00000033158	481 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000021285's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03008	Ribosome biogenesis in eukaryotes	KEGG
csem03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000021285's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000021285	xrn1	93	50.820	ENSCSEG00000005628	xrn2	84	39.857

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000021285	xrn1	99	92.727	ENSG00000114127	XRN1	96	96.117	Homo_sapiens
ENSCSEG00000021285	xrn1	94	99.038	ENSAPOG00000000622	xrn1	96	84.342	Acanthochromis_polyacanthus
ENSCSEG00000021285	xrn1	94	95.192	ENSAMEG00000012538	XRN1	92	67.097	Ailuropoda_melanoleuca
ENSCSEG00000021285	xrn1	93	98.058	ENSACIG00000001057	xrn1	98	80.260	Amphilophus_citrinellus
ENSCSEG00000021285	xrn1	94	99.038	ENSAOCG00000014097	xrn1	100	74.854	Amphiprion_ocellaris
ENSCSEG00000021285	xrn1	94	99.038	ENSAPEG00000006620	xrn1	99	75.691	Amphiprion_percula
ENSCSEG00000021285	xrn1	94	98.077	ENSATEG00000009752	xrn1	99	75.692	Anabas_testudineus
ENSCSEG00000021285	xrn1	95	77.516	ENSAPLG00000004905	XRN1	100	56.676	Anas_platyrhynchos
ENSCSEG00000021285	xrn1	94	96.154	ENSACAG00000004985	XRN1	95	64.400	Anolis_carolinensis
ENSCSEG00000021285	xrn1	94	95.192	ENSANAG00000029013	XRN1	98	70.347	Aotus_nancymaae
ENSCSEG00000021285	xrn1	94	98.077	ENSACLG00000004806	xrn1	99	71.182	Astatotilapia_calliptera
ENSCSEG00000021285	xrn1	94	97.115	ENSAMXG00000019370	xrn1	95	98.058	Astyanax_mexicanus
ENSCSEG00000021285	xrn1	94	95.192	ENSBTAG00000011524	XRN1	100	55.599	Bos_taurus
ENSCSEG00000021285	xrn1	92	79.412	WBGene00012730	xrn-1	68	38.593	Caenorhabditis_elegans
ENSCSEG00000021285	xrn1	94	95.192	ENSCJAG00000001872	XRN1	95	67.179	Callithrix_jacchus
ENSCSEG00000021285	xrn1	94	95.192	ENSCAFG00000007783	XRN1	92	67.799	Canis_familiaris
ENSCSEG00000021285	xrn1	94	95.192	ENSCAFG00020009120	XRN1	99	75.671	Canis_lupus_dingo
ENSCSEG00000021285	xrn1	94	95.192	ENSCHIG00000019192	XRN1	93	67.340	Capra_hircus
ENSCSEG00000021285	xrn1	94	95.192	ENSTSYG00000002705	XRN1	100	56.070	Carlito_syrichta
ENSCSEG00000021285	xrn1	71	93.671	ENSCAPG00000004604	-	99	61.905	Cavia_aperea
ENSCSEG00000021285	xrn1	93	96.117	ENSCPOG00000035199	-	100	96.117	Cavia_porcellus
ENSCSEG00000021285	xrn1	94	95.192	ENSCCAG00000034800	XRN1	99	77.619	Cebus_capucinus
ENSCSEG00000021285	xrn1	94	95.192	ENSCATG00000041794	XRN1	95	67.314	Cercocebus_atys
ENSCSEG00000021285	xrn1	94	95.192	ENSCLAG00000001451	XRN1	99	77.619	Chinchilla_lanigera
ENSCSEG00000021285	xrn1	94	95.192	ENSCSAG00000011265	XRN1	95	67.340	Chlorocebus_sabaeus
ENSCSEG00000021285	xrn1	94	85.577	ENSCING00000001334	-	95	70.732	Ciona_intestinalis
ENSCSEG00000021285	xrn1	94	86.538	ENSCSAVG00000008584	-	88	50.398	Ciona_savignyi
ENSCSEG00000021285	xrn1	94	95.192	ENSCANG00000037495	XRN1	99	77.619	Colobus_angolensis_palliatus
ENSCSEG00000021285	xrn1	94	95.192	ENSCGRG00001019411	Xrn1	99	77.937	Cricetulus_griseus_chok1gshd
ENSCSEG00000021285	xrn1	94	95.192	ENSCGRG00000012464	Xrn1	99	77.937	Cricetulus_griseus_crigri
ENSCSEG00000021285	xrn1	94	98.077	ENSCVAG00000013089	xrn1	98	81.605	Cyprinodon_variegatus
ENSCSEG00000021285	xrn1	94	99.038	ENSDARG00000091652	xrn1	98	82.700	Danio_rerio
ENSCSEG00000021285	xrn1	93	95.146	ENSDNOG00000034202	-	100	95.146	Dasypus_novemcinctus
ENSCSEG00000021285	xrn1	94	89.423	ENSDORG00000013833	Xrn1	94	67.070	Dipodomys_ordii
ENSCSEG00000021285	xrn1	94	70.192	FBgn0020261	pcm	67	41.607	Drosophila_melanogaster
ENSCSEG00000021285	xrn1	71	93.671	ENSETEG00000003978	XRN1	81	62.605	Echinops_telfairi
ENSCSEG00000021285	xrn1	94	95.192	ENSEASG00005002687	XRN1	99	78.095	Equus_asinus_asinus
ENSCSEG00000021285	xrn1	94	95.192	ENSECAG00000008301	XRN1	100	56.141	Equus_caballus
ENSCSEG00000021285	xrn1	94	95.192	ENSEEUG00000011323	XRN1	86	64.712	Erinaceus_europaeus
ENSCSEG00000021285	xrn1	94	99.038	ENSELUG00000000169	xrn1	100	65.352	Esox_lucius
ENSCSEG00000021285	xrn1	94	95.192	ENSFCAG00000027589	XRN1	99	80.220	Felis_catus
ENSCSEG00000021285	xrn1	94	94.231	ENSFALG00000007021	XRN1	96	65.972	Ficedula_albicollis
ENSCSEG00000021285	xrn1	94	95.192	ENSFDAG00000020494	XRN1	99	78.095	Fukomys_damarensis
ENSCSEG00000021285	xrn1	98	77.399	ENSFHEG00000017356	-	98	78.846	Fundulus_heteroclitus
ENSCSEG00000021285	xrn1	93	99.029	ENSFHEG00000017255	-	100	99.029	Fundulus_heteroclitus
ENSCSEG00000021285	xrn1	94	97.115	ENSGMOG00000006396	xrn1	84	71.323	Gadus_morhua
ENSCSEG00000021285	xrn1	94	95.192	ENSGALG00000002706	XRN1	94	65.895	Gallus_gallus
ENSCSEG00000021285	xrn1	93	98.058	ENSGAFG00000006293	-	100	98.058	Gambusia_affinis
ENSCSEG00000021285	xrn1	94	99.038	ENSGACG00000014328	xrn1	100	69.487	Gasterosteus_aculeatus
ENSCSEG00000021285	xrn1	94	93.269	ENSGAGG00000017535	XRN1	93	65.352	Gopherus_agassizii
ENSCSEG00000021285	xrn1	94	95.192	ENSGGOG00000008047	XRN1	100	55.882	Gorilla_gorilla
ENSCSEG00000021285	xrn1	93	99.029	ENSHBUG00000005908	xrn1	98	79.710	Haplochromis_burtoni
ENSCSEG00000021285	xrn1	94	95.192	ENSHGLG00000014476	XRN1	99	77.619	Heterocephalus_glaber_female
ENSCSEG00000021285	xrn1	94	95.192	ENSHGLG00100015130	XRN1	99	77.619	Heterocephalus_glaber_male
ENSCSEG00000021285	xrn1	94	99.038	ENSHCOG00000014062	xrn1	99	76.537	Hippocampus_comes
ENSCSEG00000021285	xrn1	93	100.000	ENSHCOG00000013992	-	90	100.000	Hippocampus_comes
ENSCSEG00000021285	xrn1	94	98.077	ENSIPUG00000015229	xrn1	100	63.879	Ictalurus_punctatus
ENSCSEG00000021285	xrn1	94	95.192	ENSSTOG00000013552	XRN1	99	77.937	Ictidomys_tridecemlineatus
ENSCSEG00000021285	xrn1	96	77.495	ENSJJAG00000010863	Xrn1	99	77.483	Jaculus_jaculus
ENSCSEG00000021285	xrn1	94	97.115	ENSKMAG00000021356	xrn1	95	84.946	Kryptolebias_marmoratus
ENSCSEG00000021285	xrn1	94	99.038	ENSLBEG00000018656	xrn1	97	100.000	Labrus_bergylta
ENSCSEG00000021285	xrn1	94	97.115	ENSLACG00000009020	XRN1	87	67.177	Latimeria_chalumnae
ENSCSEG00000021285	xrn1	94	99.038	ENSLOCG00000007944	xrn1	95	68.224	Lepisosteus_oculatus
ENSCSEG00000021285	xrn1	94	95.192	ENSLAFG00000015426	XRN1	99	70.467	Loxodonta_africana
ENSCSEG00000021285	xrn1	94	95.192	ENSMFAG00000032599	XRN1	100	56.020	Macaca_fascicularis
ENSCSEG00000021285	xrn1	94	95.192	ENSMMUG00000014038	XRN1	100	56.020	Macaca_mulatta
ENSCSEG00000021285	xrn1	94	95.192	ENSMNEG00000034217	XRN1	100	55.964	Macaca_nemestrina
ENSCSEG00000021285	xrn1	94	95.192	ENSMLEG00000041349	-	99	79.075	Mandrillus_leucophaeus
ENSCSEG00000021285	xrn1	94	98.077	ENSMAMG00000013219	xrn1	92	85.897	Mastacembelus_armatus
ENSCSEG00000021285	xrn1	94	98.077	ENSMZEG00005015099	xrn1	99	71.124	Maylandia_zebra
ENSCSEG00000021285	xrn1	73	96.296	ENSMGAG00000006333	XRN1	93	65.656	Meleagris_gallopavo
ENSCSEG00000021285	xrn1	93	96.117	ENSMAUG00000014268	-	97	96.117	Mesocricetus_auratus
ENSCSEG00000021285	xrn1	99	92.727	ENSMICG00000048948	XRN1	96	96.117	Microcebus_murinus
ENSCSEG00000021285	xrn1	94	95.192	ENSMOCG00000008665	Xrn1	99	77.937	Microtus_ochrogaster
ENSCSEG00000021285	xrn1	96	82.303	ENSMMOG00000020896	-	96	79.368	Mola_mola
ENSCSEG00000021285	xrn1	93	96.117	ENSMODG00000021236	XRN1	100	55.011	Monodelphis_domestica
ENSCSEG00000021285	xrn1	94	98.077	ENSMALG00000004098	xrn1	100	69.871	Monopterus_albus
ENSCSEG00000021285	xrn1	94	95.192	MGP_CAROLIEiJ_G0032535	Xrn1	100	92.500	Mus_caroli
ENSCSEG00000021285	xrn1	94	95.192	ENSMUSG00000032410	Xrn1	100	92.500	Mus_musculus
ENSCSEG00000021285	xrn1	94	95.192	MGP_PahariEiJ_G0015404	Xrn1	100	92.500	Mus_pahari
ENSCSEG00000021285	xrn1	94	95.192	MGP_SPRETEiJ_G0033678	Xrn1	100	92.500	Mus_spretus
ENSCSEG00000021285	xrn1	94	95.192	ENSMPUG00000012040	XRN1	100	56.047	Mustela_putorius_furo
ENSCSEG00000021285	xrn1	94	95.192	ENSMLUG00000016885	XRN1	93	67.314	Myotis_lucifugus
ENSCSEG00000021285	xrn1	94	94.231	ENSNGAG00000023964	Xrn1	99	74.086	Nannospalax_galili
ENSCSEG00000021285	xrn1	93	99.029	ENSNBRG00000001531	-	99	99.029	Neolamprologus_brichardi
ENSCSEG00000021285	xrn1	94	95.192	ENSNLEG00000004726	XRN1	100	55.826	Nomascus_leucogenys
ENSCSEG00000021285	xrn1	93	97.087	ENSMEUG00000014473	-	65	97.087	Notamacropus_eugenii
ENSCSEG00000021285	xrn1	94	96.154	ENSOPRG00000007337	-	62	67.680	Ochotona_princeps
ENSCSEG00000021285	xrn1	93	96.117	ENSODEG00000008804	-	100	96.117	Octodon_degus
ENSCSEG00000021285	xrn1	94	98.077	ENSONIG00000016673	xrn1	99	75.082	Oreochromis_niloticus
ENSCSEG00000021285	xrn1	89	76.376	ENSOANG00000006735	XRN1	100	52.206	Ornithorhynchus_anatinus
ENSCSEG00000021285	xrn1	94	96.154	ENSOCUG00000001861	XRN1	93	67.664	Oryctolagus_cuniculus
ENSCSEG00000021285	xrn1	94	99.038	ENSORLG00000013005	xrn1	98	69.364	Oryzias_latipes
ENSCSEG00000021285	xrn1	94	99.038	ENSORLG00020005559	xrn1	100	69.306	Oryzias_latipes_hni
ENSCSEG00000021285	xrn1	94	99.038	ENSORLG00015022523	xrn1	100	69.404	Oryzias_latipes_hsok
ENSCSEG00000021285	xrn1	94	99.038	ENSOMEG00000015397	xrn1	100	75.322	Oryzias_melastigma
ENSCSEG00000021285	xrn1	94	95.192	ENSOGAG00000000170	XRN1	100	54.157	Otolemur_garnettii
ENSCSEG00000021285	xrn1	94	95.192	ENSOARG00000006343	XRN1	93	67.421	Ovis_aries
ENSCSEG00000021285	xrn1	94	94.231	ENSPPAG00000010180	XRN1	100	55.914	Pan_paniscus
ENSCSEG00000021285	xrn1	94	95.192	ENSPPRG00000007125	XRN1	100	56.631	Panthera_pardus
ENSCSEG00000021285	xrn1	94	95.192	ENSPTIG00000021081	XRN1	100	56.631	Panthera_tigris_altaica
ENSCSEG00000021285	xrn1	94	94.231	ENSPTRG00000015482	XRN1	100	55.971	Pan_troglodytes
ENSCSEG00000021285	xrn1	94	95.192	ENSPANG00000010638	XRN1	100	56.077	Papio_anubis
ENSCSEG00000021285	xrn1	93	100.000	ENSPKIG00000011903	-	79	100.000	Paramormyrops_kingsleyae
ENSCSEG00000021285	xrn1	94	93.269	ENSPSIG00000018050	XRN1	100	56.317	Pelodiscus_sinensis
ENSCSEG00000021285	xrn1	94	99.038	ENSPMGG00000002648	xrn1	99	87.159	Periophthalmus_magnuspinnatus
ENSCSEG00000021285	xrn1	94	95.192	ENSPEMG00000020610	Xrn1	99	77.937	Peromyscus_maniculatus_bairdii
ENSCSEG00000021285	xrn1	72	90.000	ENSPMAG00000002975	xrn1	99	46.323	Petromyzon_marinus
ENSCSEG00000021285	xrn1	93	97.087	ENSPCIG00000028735	XRN1	99	77.583	Phascolarctos_cinereus
ENSCSEG00000021285	xrn1	94	98.077	ENSPFOG00000013932	xrn1	99	72.669	Poecilia_formosa
ENSCSEG00000021285	xrn1	94	98.077	ENSPLAG00000021653	xrn1	99	72.902	Poecilia_latipinna
ENSCSEG00000021285	xrn1	94	98.077	ENSPMEG00000003076	xrn1	95	73.054	Poecilia_mexicana
ENSCSEG00000021285	xrn1	94	98.077	ENSPREG00000021147	xrn1	100	69.301	Poecilia_reticulata
ENSCSEG00000021285	xrn1	94	95.192	ENSPPYG00000014172	XRN1	100	55.755	Pongo_abelii
ENSCSEG00000021285	xrn1	95	76.858	ENSPCAG00000005638	XRN1	90	63.380	Procavia_capensis
ENSCSEG00000021285	xrn1	94	95.192	ENSPCOG00000013089	XRN1	99	77.619	Propithecus_coquereli
ENSCSEG00000021285	xrn1	94	95.192	ENSPVAG00000016265	XRN1	89	67.023	Pteropus_vampyrus
ENSCSEG00000021285	xrn1	94	98.077	ENSPNYG00000010570	xrn1	99	70.775	Pundamilia_nyererei
ENSCSEG00000021285	xrn1	94	97.115	ENSPNAG00000023531	xrn1	100	62.073	Pygocentrus_nattereri
ENSCSEG00000021285	xrn1	94	95.192	ENSRNOG00000042951	Xrn1	91	67.152	Rattus_norvegicus
ENSCSEG00000021285	xrn1	94	95.192	ENSRBIG00000041227	XRN1	95	67.259	Rhinopithecus_bieti
ENSCSEG00000021285	xrn1	94	95.192	ENSRROG00000033764	-	100	96.117	Rhinopithecus_roxellana
ENSCSEG00000021285	xrn1	93	63.107	YGL173C	XRN1	63	53.261	Saccharomyces_cerevisiae
ENSCSEG00000021285	xrn1	94	95.192	ENSSBOG00000029561	XRN1	100	55.806	Saimiri_boliviensis_boliviensis
ENSCSEG00000021285	xrn1	96	76.645	ENSSHAG00000016207	XRN1	100	55.339	Sarcophilus_harrisii
ENSCSEG00000021285	xrn1	94	98.077	ENSSFOG00015024211	xrn1	100	62.273	Scleropages_formosus
ENSCSEG00000021285	xrn1	94	99.038	ENSSMAG00000016534	xrn1	100	78.287	Scophthalmus_maximus
ENSCSEG00000021285	xrn1	94	99.038	ENSSDUG00000010306	xrn1	98	81.296	Seriola_dumerili
ENSCSEG00000021285	xrn1	94	99.038	ENSSLDG00000021543	xrn1	100	79.369	Seriola_lalandi_dorsalis
ENSCSEG00000021285	xrn1	96	76.596	ENSSARG00000007741	-	75	67.147	Sorex_araneus
ENSCSEG00000021285	xrn1	93	96.117	ENSSPUG00000010754	-	100	96.117	Sphenodon_punctatus
ENSCSEG00000021285	xrn1	95	78.186	ENSSPUG00000010779	-	95	77.707	Sphenodon_punctatus
ENSCSEG00000021285	xrn1	97	86.765	ENSSPAG00000009856	-	95	85.421	Stegastes_partitus
ENSCSEG00000021285	xrn1	94	93.269	ENSTGUG00000008498	XRN1	100	57.224	Taeniopygia_guttata
ENSCSEG00000021285	xrn1	94	96.154	ENSTRUG00000004895	xrn1	97	86.364	Takifugu_rubripes
ENSCSEG00000021285	xrn1	92	98.039	ENSTNIG00000017615	xrn1	95	73.359	Tetraodon_nigroviridis
ENSCSEG00000021285	xrn1	94	95.192	ENSTBEG00000003256	XRN1	76	84.474	Tupaia_belangeri
ENSCSEG00000021285	xrn1	94	87.500	ENSTTRG00000012914	XRN1	100	52.803	Tursiops_truncatus
ENSCSEG00000021285	xrn1	94	95.192	ENSUAMG00000001608	XRN1	99	74.762	Ursus_americanus
ENSCSEG00000021285	xrn1	94	95.192	ENSUMAG00000013625	XRN1	92	67.502	Ursus_maritimus
ENSCSEG00000021285	xrn1	94	95.192	ENSVPAG00000004690	XRN1	100	53.971	Vicugna_pacos
ENSCSEG00000021285	xrn1	94	95.192	ENSVVUG00000024461	XRN1	99	78.970	Vulpes_vulpes
ENSCSEG00000021285	xrn1	94	96.154	ENSXETG00000000619	xrn1	99	85.789	Xenopus_tropicalis
ENSCSEG00000021285	xrn1	94	98.077	ENSXCOG00000007917	xrn1	96	79.327	Xiphophorus_couchianus
ENSCSEG00000021285	xrn1	94	98.077	ENSXMAG00000018320	xrn1	98	78.753	Xiphophorus_maculatus