EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCSEG00000021295 (Gene tree)
Gene ID
103385488
Gene Symbol
pabpc1l
Alias
fi20g03|wu:fi20g03|zgc:55855
Full Name
embryonic polyadenylate-binding protein-like
Gene Type
protein_coding
Species
Cynoglossus_semilaevis
Status
putative
Strand
Minus strand
Length
4486 bases
Position
chr10:19804189-19808674
Accession
103385488
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCSEP00000033174PABPPF00658.181.7e-2811
ENSCSEP00000033174RRM_5PF13893.64.3e-0912
ENSCSEP00000033174RRM_5PF13893.64.3e-0922
ENSCSEP00000033174RRM_1PF00076.222.4e-8714
ENSCSEP00000033174RRM_1PF00076.222.4e-8724
ENSCSEP00000033174RRM_1PF00076.222.4e-8734
ENSCSEP00000033174RRM_1PF00076.222.4e-8744
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCSET00000033601-1665XM_008319399ENSCSEP00000033174554 (aa)XP_008317621-
Gene Model
Click here to download ENSCSEG00000021295's gene model file
Pathways
Pathway IDPathway NameSource
csem03013RNA transportKEGG
csem03015mRNA surveillance pathwayKEGG
csem03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000021295's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCSEG00000021295pabpc1l6532.099ENSCSEG00000010018-6832.099
ENSCSEG00000021295pabpc1l6833.663ENSCSEG00000010011RBMS35133.663
ENSCSEG00000021295pabpc1l6434.615ENSCSEG00000020606RBFOX35234.615
ENSCSEG00000021295pabpc1l7030.263ENSCSEG00000020141elavl48430.263
ENSCSEG00000021295pabpc1l6835.789ENSCSEG00000014677-6035.789
ENSCSEG00000021295pabpc1l5538.356ENSCSEG00000007749si:dkey-205h23.26338.356
ENSCSEG00000021295pabpc1l6637.975ENSCSEG00000000688-8931.053
ENSCSEG00000021295pabpc1l6930.000ENSCSEG00000006335elavl29330.000
ENSCSEG00000021295pabpc1l5436.986ENSCSEG00000002581celf3b6736.986
ENSCSEG00000021295pabpc1l5538.356ENSCSEG00000007913celf3a6238.356
ENSCSEG00000021295pabpc1l5538.356ENSCSEG00000007074celf46138.356
ENSCSEG00000021295pabpc1l5438.356ENSCSEG00000002800celf5a6238.356
ENSCSEG00000021295pabpc1l9966.559ENSCSEG00000015241-9866.559
ENSCSEG00000021295pabpc1l9965.296ENSCSEG00000000130pabpc49765.789
ENSCSEG00000021295pabpc1l9964.800ENSCSEG00000013324pabpc1a9965.120
ENSCSEG00000021295pabpc1l5436.986ENSCSEG00000003342-5836.986
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCSEG00000021295pabpc1l9965.563ENSG00000101104PABPC1L9776.636Homo_sapiens
ENSCSEG00000021295pabpc1l9384.055ENSAPOG00000010842pabpc1l9973.970Acanthochromis_polyacanthus
ENSCSEG00000021295pabpc1l9775.181ENSAMEG00000004099PABPC1L9269.362Ailuropoda_melanoleuca
ENSCSEG00000021295pabpc1l9981.750ENSACIG00000021004-10081.750Amphilophus_citrinellus
ENSCSEG00000021295pabpc1l9585.714ENSAOCG00000006167-9974.038Amphiprion_ocellaris
ENSCSEG00000021295pabpc1l10078.229ENSAPEG00000010558-9885.648Amphiprion_percula
ENSCSEG00000021295pabpc1l9977.705ENSATEG00000007428pabpc1l9978.033Anabas_testudineus
ENSCSEG00000021295pabpc1l9865.528ENSAPLG00000008415PABPC1L9965.640Anas_platyrhynchos
ENSCSEG00000021295pabpc1l9967.147ENSACAG00000011841PABPC1L9867.147Anolis_carolinensis
ENSCSEG00000021295pabpc1l9965.232ENSANAG00000026826PABPC1L9865.232Aotus_nancymaae
ENSCSEG00000021295pabpc1l9975.481ENSACLG00000024791pabpc1l9975.481Astatotilapia_calliptera
ENSCSEG00000021295pabpc1l9971.429ENSAMXG00000013552pabpc1l9971.429Astyanax_mexicanus
ENSCSEG00000021295pabpc1l6966.265ENSBTAG00000016849PABPC1L7666.265Bos_taurus
ENSCSEG00000021295pabpc1l7484.848ENSBTAG00000055300-9884.848Bos_taurus
ENSCSEG00000021295pabpc1l9964.901ENSCJAG00000017628PABPC1L9864.901Callithrix_jacchus
ENSCSEG00000021295pabpc1l6678.363ENSCJAG00000038506-9878.363Callithrix_jacchus
ENSCSEG00000021295pabpc1l9863.653ENSCAFG00000009573PABPC1L9963.653Canis_familiaris
ENSCSEG00000021295pabpc1l9964.238ENSCAFG00020013828PABPC1L9964.238Canis_lupus_dingo
ENSCSEG00000021295pabpc1l9765.254ENSCHIG00000025759PABPC1L9065.254Capra_hircus
ENSCSEG00000021295pabpc1l9964.463ENSTSYG00000006645PABPC1L9864.463Carlito_syrichta
ENSCSEG00000021295pabpc1l9859.701ENSCAPG00000014519PABPC1L9959.701Cavia_aperea
ENSCSEG00000021295pabpc1l9962.109ENSCPOG00000013633PABPC1L9962.109Cavia_porcellus
ENSCSEG00000021295pabpc1l9965.189ENSCCAG00000023338PABPC1L9865.189Cebus_capucinus
ENSCSEG00000021295pabpc1l9965.517ENSCATG00000034065PABPC1L9865.517Cercocebus_atys
ENSCSEG00000021295pabpc1l9862.046ENSCLAG00000005298PABPC1L9961.983Chinchilla_lanigera
ENSCSEG00000021295pabpc1l9965.894ENSCSAG00000014242PABPC1L9865.894Chlorocebus_sabaeus
ENSCSEG00000021295pabpc1l7776.538ENSCPBG00000017755-9976.538Chrysemys_picta_bellii
ENSCSEG00000021295pabpc1l6283.969ENSCPBG00000007810-9183.969Chrysemys_picta_bellii
ENSCSEG00000021295pabpc1l9167.391ENSCING00000002796-7667.391Ciona_intestinalis
ENSCSEG00000021295pabpc1l9760.036ENSCSAVG00000003102-10083.893Ciona_savignyi
ENSCSEG00000021295pabpc1l9971.111ENSCSAVG00000004246-9671.111Ciona_savignyi
ENSCSEG00000021295pabpc1l9963.682ENSCANG00000037530PABPC1L9863.636Colobus_angolensis_palliatus
ENSCSEG00000021295pabpc1l9959.902ENSCGRG00001021938Pabpc1l9959.902Cricetulus_griseus_chok1gshd
ENSCSEG00000021295pabpc1l9959.902ENSCGRG00000007946Pabpc1l9959.902Cricetulus_griseus_crigri
ENSCSEG00000021295pabpc1l9980.284ENSCVAG00000015943-9793.023Cyprinodon_variegatus
ENSCSEG00000021295pabpc1l9971.935ENSDARG00000002597pabpc1l9093.846Danio_rerio
ENSCSEG00000021295pabpc1l9964.638ENSDNOG00000048450PABPC1L9964.638Dasypus_novemcinctus
ENSCSEG00000021295pabpc1l9962.687ENSDORG00000001067Pabpc1l9962.687Dipodomys_ordii
ENSCSEG00000021295pabpc1l9976.016ENSETEG00000009969PABPC1L6476.016Echinops_telfairi
ENSCSEG00000021295pabpc1l7483.030ENSEASG00005023408-10083.030Equus_asinus_asinus
ENSCSEG00000021295pabpc1l5774.051ENSEASG00005023407-6474.051Equus_asinus_asinus
ENSCSEG00000021295pabpc1l7165.639ENSECAG00000040139-8265.639Equus_caballus
ENSCSEG00000021295pabpc1l9962.895ENSEEUG00000005978PABPC1L9862.895Erinaceus_europaeus
ENSCSEG00000021295pabpc1l9977.058ENSELUG00000001811pabpc1l9977.058Esox_lucius
ENSCSEG00000021295pabpc1l9965.340ENSFCAG00000011692PABPC1L9965.340Felis_catus
ENSCSEG00000021295pabpc1l7775.854ENSFALG00000005372PABPC1L7475.854Ficedula_albicollis
ENSCSEG00000021295pabpc1l9964.615ENSFDAG00000008291PABPC1L9964.615Fukomys_damarensis
ENSCSEG00000021295pabpc1l9976.835ENSFHEG00000003398pabpc1l9976.835Fundulus_heteroclitus
ENSCSEG00000021295pabpc1l9981.633ENSGMOG00000004437pabpc1l9881.633Gadus_morhua
ENSCSEG00000021295pabpc1l9869.485ENSGALG00000004123PABPC1L9977.404Gallus_gallus
ENSCSEG00000021295pabpc1l9972.881ENSGAFG00000021057pabpc1l9972.881Gambusia_affinis
ENSCSEG00000021295pabpc1l9987.671ENSGACG00000002792pabpc1l9987.671Gasterosteus_aculeatus
ENSCSEG00000021295pabpc1l9973.262ENSGAGG00000000589PABPC1L9873.262Gopherus_agassizii
ENSCSEG00000021295pabpc1l9965.563ENSGGOG00000004584PABPC1L9865.563Gorilla_gorilla
ENSCSEG00000021295pabpc1l9981.139ENSHBUG00000006134pabpc1l9981.139Haplochromis_burtoni
ENSCSEG00000021295pabpc1l9963.036ENSHGLG00000008434PABPC1L9963.201Heterocephalus_glaber_female
ENSCSEG00000021295pabpc1l6784.571ENSHGLG00100019506-9984.571Heterocephalus_glaber_male
ENSCSEG00000021295pabpc1l9963.036ENSHGLG00100012151PABPC1L9963.201Heterocephalus_glaber_male
ENSCSEG00000021295pabpc1l9981.371ENSHCOG00000009270pabpc1l9981.898Hippocampus_comes
ENSCSEG00000021295pabpc1l9976.389ENSIPUG00000012602pabpc1l9976.389Ictalurus_punctatus
ENSCSEG00000021295pabpc1l6661.326ENSIPUG00000006760-9161.326Ictalurus_punctatus
ENSCSEG00000021295pabpc1l6659.184ENSIPUG00000006780-9459.184Ictalurus_punctatus
ENSCSEG00000021295pabpc1l9964.415ENSSTOG00000003739PABPC1L9964.415Ictidomys_tridecemlineatus
ENSCSEG00000021295pabpc1l8349.546ENSJJAG00000022406Pabpc1l9947.974Jaculus_jaculus
ENSCSEG00000021295pabpc1l9976.606ENSKMAG00000016847pabpc1l9976.606Kryptolebias_marmoratus
ENSCSEG00000021295pabpc1l10076.795ENSLBEG00000010084pabpc1l10076.795Labrus_bergylta
ENSCSEG00000021295pabpc1l9976.871ENSLACG00000005762PABPC1L9976.871Latimeria_chalumnae
ENSCSEG00000021295pabpc1l9972.320ENSLOCG00000007519pabpc1l9872.320Lepisosteus_oculatus
ENSCSEG00000021295pabpc1l9971.754ENSLAFG00000003553PABPC1L9971.754Loxodonta_africana
ENSCSEG00000021295pabpc1l9965.517ENSMFAG00000040365PABPC1L9865.517Macaca_fascicularis
ENSCSEG00000021295pabpc1l9964.532ENSMNEG00000032298PABPC1L9864.532Macaca_nemestrina
ENSCSEG00000021295pabpc1l9965.517ENSMLEG00000043139PABPC1L9865.517Mandrillus_leucophaeus
ENSCSEG00000021295pabpc1l9777.722ENSMAMG00000011854pabpc1l9777.722Mastacembelus_armatus
ENSCSEG00000021295pabpc1l9975.481ENSMZEG00005023713pabpc1l9975.481Maylandia_zebra
ENSCSEG00000021295pabpc1l9966.396ENSMGAG00000003674PABPC1L9866.396Meleagris_gallopavo
ENSCSEG00000021295pabpc1l9959.901ENSMOCG00000013186Pabpc1l9959.901Microtus_ochrogaster
ENSCSEG00000021295pabpc1l9981.533ENSMMOG00000020574-9981.533Mola_mola
ENSCSEG00000021295pabpc1l9665.025ENSMODG00000016198PABPC1L9965.025Monodelphis_domestica
ENSCSEG00000021295pabpc1l9675.581ENSMALG00000021622pabpc1l9975.581Monopterus_albus
ENSCSEG00000021295pabpc1l9958.882MGP_CAROLIEiJ_G0024627Pabpc1l9958.882Mus_caroli
ENSCSEG00000021295pabpc1l9959.211ENSMUSG00000054582Pabpc1l9959.211Mus_musculus
ENSCSEG00000021295pabpc1l9958.852MGP_PahariEiJ_G0026071Pabpc1l10058.852Mus_pahari
ENSCSEG00000021295pabpc1l9958.882MGP_SPRETEiJ_G0025549Pabpc1l9958.882Mus_spretus
ENSCSEG00000021295pabpc1l9964.668ENSMPUG00000017646PABPC1L9964.668Mustela_putorius_furo
ENSCSEG00000021295pabpc1l9869.615ENSMLUG00000006324PABPC1L9769.615Myotis_lucifugus
ENSCSEG00000021295pabpc1l9960.033ENSNGAG00000010458Pabpc1l9959.836Nannospalax_galili
ENSCSEG00000021295pabpc1l9981.192ENSNBRG00000016633pabpc1l10081.192Neolamprologus_brichardi
ENSCSEG00000021295pabpc1l8861.594ENSMEUG00000007905-7766.872Notamacropus_eugenii
ENSCSEG00000021295pabpc1l9963.770ENSOPRG00000011846PABPC1L9963.770Ochotona_princeps
ENSCSEG00000021295pabpc1l6480.255ENSODEG00000002920-9580.255Octodon_degus
ENSCSEG00000021295pabpc1l9963.251ENSODEG00000015482PABPC1L9863.251Octodon_degus
ENSCSEG00000021295pabpc1l9975.962ENSONIG00000017314pabpc1l9975.962Oreochromis_niloticus
ENSCSEG00000021295pabpc1l8856.962ENSOANG00000015793-9956.962Ornithorhynchus_anatinus
ENSCSEG00000021295pabpc1l9375.556ENSOCUG00000003005PABPC1L8275.556Oryctolagus_cuniculus
ENSCSEG00000021295pabpc1l10079.268ENSORLG00000010322pabpc1l10079.268Oryzias_latipes
ENSCSEG00000021295pabpc1l9978.479ENSORLG00020021193pabpc1l10078.479Oryzias_latipes_hni
ENSCSEG00000021295pabpc1l9978.293ENSORLG00015017018pabpc1l10078.293Oryzias_latipes_hsok
ENSCSEG00000021295pabpc1l9970.904ENSOMEG00000010789pabpc1l9970.904Oryzias_melastigma
ENSCSEG00000021295pabpc1l9963.710ENSOGAG00000032999PABPC1L9963.710Otolemur_garnettii
ENSCSEG00000021295pabpc1l9964.793ENSOARG00000004578PABPC1L9864.793Ovis_aries
ENSCSEG00000021295pabpc1l9965.563ENSPPAG00000039677PABPC1L9865.563Pan_paniscus
ENSCSEG00000021295pabpc1l7466.044ENSPPRG00000019327-9766.044Panthera_pardus
ENSCSEG00000021295pabpc1l9965.333ENSPTIG00000006524PABPC1L9965.333Panthera_tigris_altaica
ENSCSEG00000021295pabpc1l6976.636ENSPTRG00000013531PABPC1L9776.636Pan_troglodytes
ENSCSEG00000021295pabpc1l9965.517ENSPANG00000018788PABPC1L9865.517Papio_anubis
ENSCSEG00000021295pabpc1l5883.465ENSPKIG00000016810-9083.465Paramormyrops_kingsleyae
ENSCSEG00000021295pabpc1l10071.635ENSPKIG00000007322pabpc1l10071.635Paramormyrops_kingsleyae
ENSCSEG00000021295pabpc1l7579.426ENSPSIG00000013289PABPC1L9979.426Pelodiscus_sinensis
ENSCSEG00000021295pabpc1l6179.487ENSPMGG00000023121-9179.487Periophthalmus_magnuspinnatus
ENSCSEG00000021295pabpc1l6993.846ENSPMGG00000023117pabpc1l9893.846Periophthalmus_magnuspinnatus
ENSCSEG00000021295pabpc1l9859.204ENSPEMG00000020671Pabpc1l9959.204Peromyscus_maniculatus_bairdii
ENSCSEG00000021295pabpc1l9978.017ENSPFOG00000013241pabpc1l9878.017Poecilia_formosa
ENSCSEG00000021295pabpc1l5896.063ENSPLAG00000023686-8996.063Poecilia_latipinna
ENSCSEG00000021295pabpc1l9982.447ENSPLAG00000017490-9982.447Poecilia_latipinna
ENSCSEG00000021295pabpc1l5895.385ENSPMEG00000009185-8895.385Poecilia_mexicana
ENSCSEG00000021295pabpc1l9976.873ENSPMEG00000007677pabpc1l9976.873Poecilia_mexicana
ENSCSEG00000021295pabpc1l7390.663ENSPREG00000015886pabpc1l9990.663Poecilia_reticulata
ENSCSEG00000021295pabpc1l9965.563ENSPPYG00000011042PABPC1L9865.563Pongo_abelii
ENSCSEG00000021295pabpc1l6785.246ENSPCAG00000011787-7485.246Procavia_capensis
ENSCSEG00000021295pabpc1l9963.967ENSPCOG00000020630PABPC1L9963.967Propithecus_coquereli
ENSCSEG00000021295pabpc1l9962.500ENSPVAG00000012663PABPC1L9962.500Pteropus_vampyrus
ENSCSEG00000021295pabpc1l9981.006ENSPNYG00000004101pabpc1l10081.006Pundamilia_nyererei
ENSCSEG00000021295pabpc1l9579.208ENSPNAG00000021248pabpc1l8679.208Pygocentrus_nattereri
ENSCSEG00000021295pabpc1l9959.934ENSRNOG00000012750Pabpc1l9959.934Rattus_norvegicus
ENSCSEG00000021295pabpc1l9965.728ENSRBIG00000035381PABPC1L9865.728Rhinopithecus_bieti
ENSCSEG00000021295pabpc1l9965.563ENSRROG00000044498PABPC1L9865.563Rhinopithecus_roxellana
ENSCSEG00000021295pabpc1l9965.066ENSSBOG00000009532-9865.066Saimiri_boliviensis_boliviensis
ENSCSEG00000021295pabpc1l9859.420ENSSHAG00000011446PABPC1L10059.420Sarcophilus_harrisii
ENSCSEG00000021295pabpc1l9970.465ENSSFOG00015017304pabpc1l9970.465Scleropages_formosus
ENSCSEG00000021295pabpc1l9984.767ENSSMAG00000010516pabpc1l9792.537Scophthalmus_maximus
ENSCSEG00000021295pabpc1l9977.760ENSSDUG00000014743pabpc1l9977.760Seriola_dumerili
ENSCSEG00000021295pabpc1l9881.121ENSSLDG00000006981pabpc1l9692.718Seriola_lalandi_dorsalis
ENSCSEG00000021295pabpc1l9475.532ENSSPUG00000004233PABPC1L8475.532Sphenodon_punctatus
ENSCSEG00000021295pabpc1l9979.823ENSSPAG00000017137pabpc1l9979.823Stegastes_partitus
ENSCSEG00000021295pabpc1l9965.109ENSSSCG00000007382PABPC1L9965.109Sus_scrofa
ENSCSEG00000021295pabpc1l9965.397ENSTGUG00000005114PABPC1L9965.397Taeniopygia_guttata
ENSCSEG00000021295pabpc1l9676.087ENSTRUG00000011085pabpc1l9776.087Takifugu_rubripes
ENSCSEG00000021295pabpc1l9973.864ENSTNIG00000017903pabpc1l9873.864Tetraodon_nigroviridis
ENSCSEG00000021295pabpc1l9576.125ENSTBEG00000002851PABPC1L7876.125Tupaia_belangeri
ENSCSEG00000021295pabpc1l9362.304ENSTTRG00000007618PABPC1L9962.331Tursiops_truncatus
ENSCSEG00000021295pabpc1l9966.839ENSUAMG00000017682PABPC1L9966.839Ursus_americanus
ENSCSEG00000021295pabpc1l7373.371ENSUMAG00000025436PABPC1L9073.371Ursus_maritimus
ENSCSEG00000021295pabpc1l9965.936ENSVVUG00000018939PABPC1L9965.936Vulpes_vulpes
ENSCSEG00000021295pabpc1l9478.947ENSXETG00000022831pabpc1l8578.947Xenopus_tropicalis
ENSCSEG00000021295pabpc1l9979.851ENSXCOG00000005459pabpc1l9889.928Xiphophorus_couchianus
ENSCSEG00000021295pabpc1l9981.593ENSXMAG00000017135pabpc1l9981.593Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us