EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000021349 (Gene tree)
Gene ID: 103396711
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C (C1/C2)
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 9285 bases
Position: chr20:13037377-13046661
Accession: 103396711
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000033262	RRM_1	PF00076.22	4.8e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000033691	-	6134	XM_008334918	ENSCSEP00000033262	313 (aa)	XP_008333140	UPI000495A845

Gene Model

Click here to download ENSCSEG00000021349's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000021349's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000021349	-	70	76.471	ENSCSEG00000019769	-	74	74.208
ENSCSEG00000021349	-	82	49.817	ENSCSEG00000014237	-	82	52.479

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000021349	-	89	48.763	ENSG00000184672	RALYL	93	75.949	Homo_sapiens
ENSCSEG00000021349	-	78	81.423	ENSAPOG00000006963	hnrnpc	84	77.011	Acanthochromis_polyacanthus
ENSCSEG00000021349	-	97	74.013	ENSACIG00000016568	-	85	87.879	Amphilophus_citrinellus
ENSCSEG00000021349	-	79	78.764	ENSACIG00000000270	-	83	82.273	Amphilophus_citrinellus
ENSCSEG00000021349	-	78	86.056	ENSAOCG00000021616	-	78	88.446	Amphiprion_ocellaris
ENSCSEG00000021349	-	78	81.028	ENSAOCG00000003896	-	77	81.250	Amphiprion_ocellaris
ENSCSEG00000021349	-	78	81.028	ENSAPEG00000001489	-	77	81.250	Amphiprion_percula
ENSCSEG00000021349	-	79	86.275	ENSAPEG00000019962	-	81	88.446	Amphiprion_percula
ENSCSEG00000021349	-	82	86.842	ENSATEG00000018006	-	80	93.119	Anabas_testudineus
ENSCSEG00000021349	-	79	77.821	ENSATEG00000011734	-	85	76.078	Anabas_testudineus
ENSCSEG00000021349	-	89	49.329	ENSAPLG00000015574	RALYL	76	55.804	Anas_platyrhynchos
ENSCSEG00000021349	-	89	49.324	ENSACAG00000028464	RALYL	75	56.696	Anolis_carolinensis
ENSCSEG00000021349	-	89	48.763	ENSANAG00000023383	RALYL	74	56.604	Aotus_nancymaae
ENSCSEG00000021349	-	82	84.791	ENSACLG00000005707	-	84	88.353	Astatotilapia_calliptera
ENSCSEG00000021349	-	90	69.655	ENSACLG00000013636	-	85	76.562	Astatotilapia_calliptera
ENSCSEG00000021349	-	94	68.581	ENSACLG00000000995	-	98	69.716	Astatotilapia_calliptera
ENSCSEG00000021349	-	81	75.000	ENSAMXG00000034915	zgc:55733	90	71.765	Astyanax_mexicanus
ENSCSEG00000021349	-	88	63.043	ENSAMXG00000042946	hnrnpc	98	72.917	Astyanax_mexicanus
ENSCSEG00000021349	-	89	48.763	ENSCJAG00000000402	RALYL	74	56.604	Callithrix_jacchus
ENSCSEG00000021349	-	89	48.475	ENSCPOG00000012314	RALYL	75	55.157	Cavia_porcellus
ENSCSEG00000021349	-	89	48.763	ENSCCAG00000025003	RALYL	77	75.949	Cebus_capucinus
ENSCSEG00000021349	-	89	48.763	ENSCATG00000042145	RALYL	74	56.604	Cercocebus_atys
ENSCSEG00000021349	-	89	48.311	ENSCLAG00000005228	RALYL	75	55.157	Chinchilla_lanigera
ENSCSEG00000021349	-	67	53.982	ENSCHOG00000013228	RALYL	75	50.649	Choloepus_hoffmanni
ENSCSEG00000021349	-	89	48.763	ENSCANG00000039144	RALYL	74	56.604	Colobus_angolensis_palliatus
ENSCSEG00000021349	-	89	47.811	ENSCGRG00001009241	Ralyl	75	54.018	Cricetulus_griseus_chok1gshd
ENSCSEG00000021349	-	78	85.771	ENSCVAG00000016981	-	81	84.411	Cyprinodon_variegatus
ENSCSEG00000021349	-	86	61.029	ENSCVAG00000002797	-	78	66.809	Cyprinodon_variegatus
ENSCSEG00000021349	-	81	76.984	ENSDARG00000103845	zgc:55733	92	75.299	Danio_rerio
ENSCSEG00000021349	-	77	79.098	ENSDARG00000053810	hnrnpc	82	73.745	Danio_rerio
ENSCSEG00000021349	-	88	49.141	ENSDORG00000003721	Ralyl	75	54.911	Dipodomys_ordii
ENSCSEG00000021349	-	52	55.429	ENSETEG00000014028	RALYL	82	58.025	Echinops_telfairi
ENSCSEG00000021349	-	90	41.472	ENSEBUG00000012363	hnrnpc	67	45.868	Eptatretus_burgeri
ENSCSEG00000021349	-	96	41.830	ENSEBUG00000006049	RALYL	74	47.867	Eptatretus_burgeri
ENSCSEG00000021349	-	89	47.973	ENSEEUG00000007202	RALYL	76	55.157	Erinaceus_europaeus
ENSCSEG00000021349	-	82	72.694	ENSELUG00000004132	-	91	70.632	Esox_lucius
ENSCSEG00000021349	-	80	75.655	ENSELUG00000007714	-	92	71.956	Esox_lucius
ENSCSEG00000021349	-	67	58.333	ENSFALG00000008647	RALYL	97	57.009	Ficedula_albicollis
ENSCSEG00000021349	-	84	72.593	ENSFHEG00000003605	-	78	75.934	Fundulus_heteroclitus
ENSCSEG00000021349	-	79	81.550	ENSFHEG00000007278	-	82	81.041	Fundulus_heteroclitus
ENSCSEG00000021349	-	67	59.259	ENSGALG00000036938	RALYL	75	55.804	Gallus_gallus
ENSCSEG00000021349	-	89	78.571	ENSGAFG00000020992	-	79	90.950	Gambusia_affinis
ENSCSEG00000021349	-	84	71.795	ENSGAFG00000020486	-	83	76.682	Gambusia_affinis
ENSCSEG00000021349	-	73	72.247	ENSGACG00000018932	-	91	66.520	Gasterosteus_aculeatus
ENSCSEG00000021349	-	80	83.333	ENSGACG00000017772	-	97	84.462	Gasterosteus_aculeatus
ENSCSEG00000021349	-	89	48.763	ENSGGOG00000000841	RALYL	74	56.604	Gorilla_gorilla
ENSCSEG00000021349	-	82	83.895	ENSHBUG00000010527	-	79	87.352	Haplochromis_burtoni
ENSCSEG00000021349	-	90	70.345	ENSHBUG00000018342	-	98	70.032	Haplochromis_burtoni
ENSCSEG00000021349	-	89	47.973	ENSHGLG00000004866	RALYL	75	54.709	Heterocephalus_glaber_female
ENSCSEG00000021349	-	89	47.973	ENSHGLG00100017480	RALYL	75	54.709	Heterocephalus_glaber_male
ENSCSEG00000021349	-	79	84.411	ENSHCOG00000012333	hnrnpc	86	84.791	Hippocampus_comes
ENSCSEG00000021349	-	80	77.953	ENSIPUG00000011271	hnrnpc	98	78.319	Ictalurus_punctatus
ENSCSEG00000021349	-	82	76.172	ENSIPUG00000008666	zgc:55733	94	76.852	Ictalurus_punctatus
ENSCSEG00000021349	-	89	48.311	ENSSTOG00000012583	RALYL	76	54.464	Ictidomys_tridecemlineatus
ENSCSEG00000021349	-	78	84.462	ENSKMAG00000018265	-	78	87.251	Kryptolebias_marmoratus
ENSCSEG00000021349	-	85	73.455	ENSKMAG00000011170	-	77	78.601	Kryptolebias_marmoratus
ENSCSEG00000021349	-	80	85.603	ENSLBEG00000006193	-	81	85.603	Labrus_bergylta
ENSCSEG00000021349	-	84	73.881	ENSLBEG00000006979	-	84	71.951	Labrus_bergylta
ENSCSEG00000021349	-	86	69.965	ENSLBEG00000024418	-	85	68.462	Labrus_bergylta
ENSCSEG00000021349	-	70	70.536	ENSLOCG00000002560	hnrnpc	82	68.313	Lepisosteus_oculatus
ENSCSEG00000021349	-	89	48.763	ENSMNEG00000033288	RALYL	74	56.604	Macaca_nemestrina
ENSCSEG00000021349	-	89	48.763	ENSMLEG00000038284	RALYL	74	56.604	Mandrillus_leucophaeus
ENSCSEG00000021349	-	79	79.528	ENSMAMG00000012236	-	84	76.984	Mastacembelus_armatus
ENSCSEG00000021349	-	82	85.338	ENSMAMG00000008033	-	84	90.000	Mastacembelus_armatus
ENSCSEG00000021349	-	90	70.000	ENSMZEG00005020460	-	98	69.716	Maylandia_zebra
ENSCSEG00000021349	-	82	84.791	ENSMZEG00005024249	-	79	88.353	Maylandia_zebra
ENSCSEG00000021349	-	89	47.811	ENSMAUG00000015149	Ralyl	75	54.018	Mesocricetus_auratus
ENSCSEG00000021349	-	89	48.944	ENSMICG00000005558	RALYL	80	75.949	Microcebus_murinus
ENSCSEG00000021349	-	89	47.297	ENSMOCG00000017371	Ralyl	75	54.018	Microtus_ochrogaster
ENSCSEG00000021349	-	87	78.986	ENSMMOG00000019520	-	83	88.426	Mola_mola
ENSCSEG00000021349	-	73	84.783	ENSMMOG00000021465	-	87	78.400	Mola_mola
ENSCSEG00000021349	-	82	83.396	ENSMALG00000014623	-	83	82.510	Monopterus_albus
ENSCSEG00000021349	-	79	73.705	ENSMALG00000007520	-	80	75.109	Monopterus_albus
ENSCSEG00000021349	-	89	47.811	ENSMUSG00000039717	Ralyl	93	74.684	Mus_musculus
ENSCSEG00000021349	-	89	48.986	ENSMPUG00000010724	RALYL	75	54.018	Mustela_putorius_furo
ENSCSEG00000021349	-	89	47.635	ENSNGAG00000013375	Ralyl	75	54.018	Nannospalax_galili
ENSCSEG00000021349	-	82	83.895	ENSNBRG00000015676	-	80	89.474	Neolamprologus_brichardi
ENSCSEG00000021349	-	80	79.070	ENSNBRG00000004912	-	99	76.033	Neolamprologus_brichardi
ENSCSEG00000021349	-	89	48.763	ENSNLEG00000002702	RALYL	71	56.604	Nomascus_leucogenys
ENSCSEG00000021349	-	57	50.777	ENSOPRG00000013650	-	98	48.691	Ochotona_princeps
ENSCSEG00000021349	-	89	47.119	ENSODEG00000001012	RALYL	75	54.260	Octodon_degus
ENSCSEG00000021349	-	78	79.447	ENSONIG00000007859	-	92	76.580	Oreochromis_niloticus
ENSCSEG00000021349	-	82	84.270	ENSONIG00000018350	-	79	87.352	Oreochromis_niloticus
ENSCSEG00000021349	-	78	83.333	ENSORLG00000003144	-	78	85.659	Oryzias_latipes
ENSCSEG00000021349	-	78	67.843	ENSORLG00000009999	-	78	68.465	Oryzias_latipes
ENSCSEG00000021349	-	78	67.451	ENSORLG00020018228	hnrnpc	78	68.050	Oryzias_latipes_hni
ENSCSEG00000021349	-	78	67.843	ENSORLG00015019755	-	78	68.465	Oryzias_latipes_hsok
ENSCSEG00000021349	-	78	83.333	ENSORLG00015009460	-	78	85.659	Oryzias_latipes_hsok
ENSCSEG00000021349	-	78	86.056	ENSOMEG00000022665	-	79	88.446	Oryzias_melastigma
ENSCSEG00000021349	-	78	69.020	ENSOMEG00000020488	-	77	69.710	Oryzias_melastigma
ENSCSEG00000021349	-	89	48.763	ENSPPAG00000038705	RALYL	74	56.604	Pan_paniscus
ENSCSEG00000021349	-	89	51.399	ENSPPRG00000018612	RALYL	74	57.009	Panthera_pardus
ENSCSEG00000021349	-	89	51.399	ENSPTIG00000020331	RALYL	74	57.009	Panthera_tigris_altaica
ENSCSEG00000021349	-	89	48.763	ENSPTRG00000020381	RALYL	74	56.604	Pan_troglodytes
ENSCSEG00000021349	-	89	48.763	ENSPANG00000029305	RALYL	74	56.604	Papio_anubis
ENSCSEG00000021349	-	82	72.694	ENSPKIG00000008592	-	81	76.562	Paramormyrops_kingsleyae
ENSCSEG00000021349	-	74	80.932	ENSPKIG00000022837	-	76	82.988	Paramormyrops_kingsleyae
ENSCSEG00000021349	-	89	48.814	ENSPSIG00000011135	RALYL	75	55.804	Pelodiscus_sinensis
ENSCSEG00000021349	-	66	80.097	ENSPMGG00000017774	-	96	62.445	Periophthalmus_magnuspinnatus
ENSCSEG00000021349	-	74	84.416	ENSPMGG00000013144	-	83	86.364	Periophthalmus_magnuspinnatus
ENSCSEG00000021349	-	89	47.811	ENSPEMG00000016447	Ralyl	75	54.018	Peromyscus_maniculatus_bairdii
ENSCSEG00000021349	-	67	53.304	ENSPMAG00000002407	RALYL	97	51.556	Petromyzon_marinus
ENSCSEG00000021349	-	96	75.490	ENSPFOG00000002643	-	80	87.008	Poecilia_formosa
ENSCSEG00000021349	-	84	72.426	ENSPFOG00000001583	-	78	77.178	Poecilia_formosa
ENSCSEG00000021349	-	78	86.400	ENSPLAG00000000061	-	78	88.400	Poecilia_latipinna
ENSCSEG00000021349	-	84	71.324	ENSPLAG00000015305	-	77	76.371	Poecilia_latipinna
ENSCSEG00000021349	-	84	73.260	ENSPMEG00000004802	-	78	76.763	Poecilia_mexicana
ENSCSEG00000021349	-	78	86.400	ENSPMEG00000016524	-	78	88.400	Poecilia_mexicana
ENSCSEG00000021349	-	88	77.778	ENSPREG00000001852	-	84	87.600	Poecilia_reticulata
ENSCSEG00000021349	-	72	77.826	ENSPREG00000007928	-	78	75.417	Poecilia_reticulata
ENSCSEG00000021349	-	89	46.441	ENSPVAG00000010821	RALYL	78	52.991	Pteropus_vampyrus
ENSCSEG00000021349	-	82	83.895	ENSPNYG00000003747	-	85	87.352	Pundamilia_nyererei
ENSCSEG00000021349	-	80	79.457	ENSPNYG00000020293	-	87	77.434	Pundamilia_nyererei
ENSCSEG00000021349	-	81	71.984	ENSPNAG00000019200	zgc:55733	81	73.878	Pygocentrus_nattereri
ENSCSEG00000021349	-	82	76.628	ENSPNAG00000015686	hnrnpc	88	76.834	Pygocentrus_nattereri
ENSCSEG00000021349	-	89	48.763	ENSRROG00000023925	RALYL	82	74.074	Rhinopithecus_roxellana
ENSCSEG00000021349	-	89	68.459	ENSSFOG00015012015	-	97	67.742	Scleropages_formosus
ENSCSEG00000021349	-	79	74.809	ENSSFOG00015012924	-	80	94.937	Scleropages_formosus
ENSCSEG00000021349	-	78	76.800	ENSSMAG00000013592	-	82	74.806	Scophthalmus_maximus
ENSCSEG00000021349	-	96	71.617	ENSSMAG00000011147	-	81	88.739	Scophthalmus_maximus
ENSCSEG00000021349	-	84	77.122	ENSSDUG00000001723	-	84	77.011	Seriola_dumerili
ENSCSEG00000021349	-	100	76.947	ENSSDUG00000006730	-	83	81.369	Seriola_dumerili
ENSCSEG00000021349	-	82	82.264	ENSSLDG00000007474	-	91	81.369	Seriola_lalandi_dorsalis
ENSCSEG00000021349	-	84	77.491	ENSSLDG00000007454	-	85	77.395	Seriola_lalandi_dorsalis
ENSCSEG00000021349	-	64	72.115	ENSSARG00000002374	RALYL	76	45.701	Sorex_araneus
ENSCSEG00000021349	-	84	77.289	ENSSPAG00000023204	-	84	77.395	Stegastes_partitus
ENSCSEG00000021349	-	82	87.121	ENSSPAG00000013996	-	79	90.400	Stegastes_partitus
ENSCSEG00000021349	-	67	56.388	ENSTGUG00000011689	RALYL	79	54.545	Taeniopygia_guttata
ENSCSEG00000021349	-	79	76.078	ENSTRUG00000020158	-	75	79.130	Takifugu_rubripes
ENSCSEG00000021349	-	79	72.587	ENSTNIG00000007427	-	83	74.319	Tetraodon_nigroviridis
ENSCSEG00000021349	-	92	70.103	ENSTNIG00000000334	-	89	76.113	Tetraodon_nigroviridis
ENSCSEG00000021349	-	67	47.768	ENSTBEG00000005551	RALYL	87	48.649	Tupaia_belangeri
ENSCSEG00000021349	-	89	46.575	ENSTTRG00000015762	RALYL	74	52.074	Tursiops_truncatus
ENSCSEG00000021349	-	89	47.018	ENSVPAG00000008501	RALYL	74	52.336	Vicugna_pacos
ENSCSEG00000021349	-	88	66.434	ENSXCOG00000006552	-	76	68.750	Xiphophorus_couchianus
ENSCSEG00000021349	-	50	91.411	ENSXCOG00000019434	-	69	90.184	Xiphophorus_couchianus
ENSCSEG00000021349	-	84	71.795	ENSXMAG00000009333	-	77	75.105	Xiphophorus_maculatus
ENSCSEG00000021349	-	88	78.092	ENSXMAG00000022849	-	82	88.400	Xiphophorus_maculatus