EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000000529 (Gene tree)
Gene ID: -
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 40607 bases
Position: chrKL652500.1:337431-378037
Accession: 107102679
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000031378	EST1	PF10374.9	1e-14	1	1
ENSCVAP00000031378	EST1_DNA_bind	PF10373.9	2.6e-26	1	1
ENSCVAP00000031378	PIN_4	PF13638.6	8.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000026170	-	2850	XM_015402451	ENSCVAP00000031378	949 (aa)	XP_015257937	-

Gene Model

Click here to download ENSCVAG00000000529's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000000529's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000000529	smg5	99	61.613	ENSG00000198952	SMG5	99	60.916	Homo_sapiens
ENSCVAG00000000529	smg5	100	80.674	ENSAPOG00000019690	smg5	100	80.674	Acanthochromis_polyacanthus
ENSCVAG00000000529	smg5	97	59.722	ENSAMEG00000014458	SMG5	100	59.344	Ailuropoda_melanoleuca
ENSCVAG00000000529	smg5	99	80.078	ENSACIG00000001353	smg5	99	79.883	Amphilophus_citrinellus
ENSCVAG00000000529	smg5	95	82.030	ENSAOCG00000019483	smg5	93	82.347	Amphiprion_ocellaris
ENSCVAG00000000529	smg5	97	81.735	ENSAPEG00000022949	smg5	98	82.041	Amphiprion_percula
ENSCVAG00000000529	smg5	100	78.286	ENSATEG00000005348	smg5	100	78.870	Anabas_testudineus
ENSCVAG00000000529	smg5	97	60.096	ENSAPLG00000010263	SMG5	100	59.538	Anas_platyrhynchos
ENSCVAG00000000529	smg5	99	61.224	ENSANAG00000032899	SMG5	99	60.721	Aotus_nancymaae
ENSCVAG00000000529	smg5	99	80.079	ENSACLG00000009311	smg5	99	80.373	Astatotilapia_calliptera
ENSCVAG00000000529	smg5	99	69.022	ENSAMXG00000024616	smg5	100	69.565	Astyanax_mexicanus
ENSCVAG00000000529	smg5	99	61.127	ENSBTAG00000009435	SMG5	99	60.624	Bos_taurus
ENSCVAG00000000529	smg5	99	36.016	ENSBTAG00000021747	-	99	35.827	Bos_taurus
ENSCVAG00000000529	smg5	99	61.419	ENSCJAG00000005684	SMG5	99	60.721	Callithrix_jacchus
ENSCVAG00000000529	smg5	99	60.314	ENSCAFG00000016839	SMG5	99	60.648	Canis_familiaris
ENSCVAG00000000529	smg5	99	60.314	ENSCAFG00020006061	SMG5	99	60.648	Canis_lupus_dingo
ENSCVAG00000000529	smg5	99	35.941	ENSCHIG00000006323	-	99	35.813	Capra_hircus
ENSCVAG00000000529	smg5	99	61.516	ENSCHIG00000007709	SMG5	99	60.916	Capra_hircus
ENSCVAG00000000529	smg5	99	61.650	ENSTSYG00000004099	SMG5	99	60.954	Carlito_syrichta
ENSCVAG00000000529	smg5	94	51.962	ENSCAPG00000003631	SMG5	100	51.496	Cavia_aperea
ENSCVAG00000000529	smg5	99	61.419	ENSCPOG00000015696	SMG5	99	61.209	Cavia_porcellus
ENSCVAG00000000529	smg5	99	61.337	ENSCCAG00000027409	SMG5	99	60.641	Cebus_capucinus
ENSCVAG00000000529	smg5	99	61.710	ENSCATG00000030539	SMG5	99	61.014	Cercocebus_atys
ENSCVAG00000000529	smg5	99	61.224	ENSCLAG00000003983	SMG5	99	60.721	Chinchilla_lanigera
ENSCVAG00000000529	smg5	99	61.710	ENSCSAG00000002120	SMG5	99	61.014	Chlorocebus_sabaeus
ENSCVAG00000000529	smg5	52	66.275	ENSCHOG00000008741	-	54	66.275	Choloepus_hoffmanni
ENSCVAG00000000529	smg5	93	58.593	ENSCPBG00000025848	SMG5	100	58.759	Chrysemys_picta_bellii
ENSCVAG00000000529	smg5	92	30.394	ENSCING00000008706	-	87	32.517	Ciona_intestinalis
ENSCVAG00000000529	smg5	99	58.658	ENSCANG00000029208	SMG5	99	57.936	Colobus_angolensis_palliatus
ENSCVAG00000000529	smg5	99	61.035	ENSCGRG00001006336	Smg5	99	60.763	Cricetulus_griseus_chok1gshd
ENSCVAG00000000529	smg5	97	60.835	ENSCGRG00000005111	Smg5	100	60.518	Cricetulus_griseus_crigri
ENSCVAG00000000529	smg5	100	76.575	ENSCSEG00000014220	smg5	100	76.476	Cynoglossus_semilaevis
ENSCVAG00000000529	smg5	99	67.719	ENSDARG00000041481	smg5	100	67.240	Danio_rerio
ENSCVAG00000000529	smg5	99	57.767	ENSDNOG00000000051	SMG5	99	57.588	Dasypus_novemcinctus
ENSCVAG00000000529	smg5	99	61.397	ENSDORG00000010382	Smg5	99	60.798	Dipodomys_ordii
ENSCVAG00000000529	smg5	74	84.466	ENSETEG00000010336	SMG5	84	84.466	Echinops_telfairi
ENSCVAG00000000529	smg5	90	42.732	ENSEBUG00000003739	smg5	99	43.831	Eptatretus_burgeri
ENSCVAG00000000529	smg5	99	61.613	ENSEASG00005019122	SMG5	99	61.014	Equus_asinus_asinus
ENSCVAG00000000529	smg5	99	62.500	ENSECAG00000001389	SMG5	99	62.062	Equus_caballus
ENSCVAG00000000529	smg5	73	65.796	ENSEEUG00000012690	SMG5	75	65.482	Erinaceus_europaeus
ENSCVAG00000000529	smg5	99	74.074	ENSELUG00000012585	smg5	99	73.977	Esox_lucius
ENSCVAG00000000529	smg5	99	60.392	ENSFCAG00000011783	SMG5	99	59.902	Felis_catus
ENSCVAG00000000529	smg5	54	60.169	ENSFALG00000001166	-	96	59.184	Ficedula_albicollis
ENSCVAG00000000529	smg5	97	59.661	ENSFDAG00000017388	SMG5	100	59.322	Fukomys_damarensis
ENSCVAG00000000529	smg5	94	76.305	ENSFHEG00000013939	smg5	98	75.470	Fundulus_heteroclitus
ENSCVAG00000000529	smg5	99	67.138	ENSGMOG00000007310	smg5	100	68.533	Gadus_morhua
ENSCVAG00000000529	smg5	99	61.463	ENSGALG00000029918	-	99	60.815	Gallus_gallus
ENSCVAG00000000529	smg5	99	70.696	ENSGAFG00000021691	smg5	100	70.238	Gambusia_affinis
ENSCVAG00000000529	smg5	99	71.071	ENSGACG00000013142	smg5	100	71.532	Gasterosteus_aculeatus
ENSCVAG00000000529	smg5	99	60.377	ENSGAGG00000016131	SMG5	99	59.906	Gopherus_agassizii
ENSCVAG00000000529	smg5	99	61.419	ENSGGOG00000010932	SMG5	99	60.721	Gorilla_gorilla
ENSCVAG00000000529	smg5	99	79.572	ENSHBUG00000008654	smg5	99	79.961	Haplochromis_burtoni
ENSCVAG00000000529	smg5	99	60.214	ENSHGLG00000019152	SMG5	99	59.688	Heterocephalus_glaber_female
ENSCVAG00000000529	smg5	89	60.432	ENSHGLG00100015948	SMG5	99	59.848	Heterocephalus_glaber_male
ENSCVAG00000000529	smg5	89	65.485	ENSHCOG00000010229	smg5	94	65.485	Hippocampus_comes
ENSCVAG00000000529	smg5	99	66.938	ENSIPUG00000006624	Smg5	95	72.913	Ictalurus_punctatus
ENSCVAG00000000529	smg5	99	60.933	ENSSTOG00000001780	SMG5	99	60.624	Ictidomys_tridecemlineatus
ENSCVAG00000000529	smg5	99	60.680	ENSJJAG00000022763	Smg5	99	60.388	Jaculus_jaculus
ENSCVAG00000000529	smg5	99	73.932	ENSKMAG00000014586	smg5	100	73.399	Kryptolebias_marmoratus
ENSCVAG00000000529	smg5	100	79.245	ENSLBEG00000002145	smg5	100	79.245	Labrus_bergylta
ENSCVAG00000000529	smg5	99	53.636	ENSLACG00000010521	SMG5	99	54.588	Latimeria_chalumnae
ENSCVAG00000000529	smg5	97	68.925	ENSLOCG00000008380	smg5	99	61.720	Lepisosteus_oculatus
ENSCVAG00000000529	smg5	100	60.544	ENSLAFG00000006241	SMG5	100	60.485	Loxodonta_africana
ENSCVAG00000000529	smg5	99	61.710	ENSMFAG00000045357	SMG5	99	61.014	Macaca_fascicularis
ENSCVAG00000000529	smg5	99	62.340	ENSMMUG00000000090	SMG5	99	61.637	Macaca_mulatta
ENSCVAG00000000529	smg5	99	61.613	ENSMNEG00000044425	SMG5	99	60.916	Macaca_nemestrina
ENSCVAG00000000529	smg5	99	56.341	ENSMLEG00000041192	SMG5	99	55.631	Mandrillus_leucophaeus
ENSCVAG00000000529	smg5	99	71.836	ENSMAMG00000010683	smg5	100	72.014	Mastacembelus_armatus
ENSCVAG00000000529	smg5	99	75.488	ENSMZEG00005015815	smg5	99	75.781	Maylandia_zebra
ENSCVAG00000000529	smg5	64	79.595	ENSMZEG00005016543	smg5	100	80.062	Maylandia_zebra
ENSCVAG00000000529	smg5	53	34.760	ENSMAUG00000000043	-	68	40.769	Mesocricetus_auratus
ENSCVAG00000000529	smg5	99	60.840	ENSMAUG00000010381	Smg5	99	61.057	Mesocricetus_auratus
ENSCVAG00000000529	smg5	99	61.224	ENSMICG00000002257	SMG5	99	60.721	Microcebus_murinus
ENSCVAG00000000529	smg5	99	60.293	ENSMOCG00000016590	Smg5	99	60.215	Microtus_ochrogaster
ENSCVAG00000000529	smg5	99	71.043	ENSMMOG00000017199	smg5	94	76.330	Mola_mola
ENSCVAG00000000529	smg5	76	34.465	ENSMODG00000004511	-	77	34.465	Monodelphis_domestica
ENSCVAG00000000529	smg5	86	59.733	ENSMODG00000016901	SMG5	98	58.929	Monodelphis_domestica
ENSCVAG00000000529	smg5	79	31.969	ENSMODG00000004532	-	85	32.481	Monodelphis_domestica
ENSCVAG00000000529	smg5	76	34.501	ENSMODG00000004735	-	86	34.501	Monodelphis_domestica
ENSCVAG00000000529	smg5	77	33.250	ENSMODG00000010675	-	91	33.250	Monodelphis_domestica
ENSCVAG00000000529	smg5	99	70.125	ENSMALG00000010375	smg5	94	77.348	Monopterus_albus
ENSCVAG00000000529	smg5	99	61.035	MGP_CAROLIEiJ_G0025163	Smg5	100	66.667	Mus_caroli
ENSCVAG00000000529	smg5	99	61.230	ENSMUSG00000001415	Smg5	99	66.667	Mus_musculus
ENSCVAG00000000529	smg5	99	60.976	MGP_PahariEiJ_G0026606	Smg5	100	65.922	Mus_pahari
ENSCVAG00000000529	smg5	99	61.133	MGP_SPRETEiJ_G0026104	Smg5	100	66.667	Mus_spretus
ENSCVAG00000000529	smg5	93	59.417	ENSMPUG00000004546	SMG5	100	58.498	Mustela_putorius_furo
ENSCVAG00000000529	smg5	99	61.187	ENSMLUG00000008518	SMG5	99	60.624	Myotis_lucifugus
ENSCVAG00000000529	smg5	99	61.426	ENSNGAG00000020706	Smg5	99	60.763	Nannospalax_galili
ENSCVAG00000000529	smg5	99	34.935	ENSNGAG00000012101	-	99	34.960	Nannospalax_galili
ENSCVAG00000000529	smg5	97	76.004	ENSNBRG00000004332	smg5	98	76.701	Neolamprologus_brichardi
ENSCVAG00000000529	smg5	99	61.516	ENSNLEG00000012439	SMG5	99	60.819	Nomascus_leucogenys
ENSCVAG00000000529	smg5	99	59.144	ENSMEUG00000012834	SMG5	99	58.909	Notamacropus_eugenii
ENSCVAG00000000529	smg5	99	61.127	ENSOPRG00000009152	SMG5	99	60.429	Ochotona_princeps
ENSCVAG00000000529	smg5	99	61.187	ENSODEG00000012237	SMG5	99	61.052	Octodon_degus
ENSCVAG00000000529	smg5	99	72.178	ENSONIG00000008632	smg5	100	71.556	Oreochromis_niloticus
ENSCVAG00000000529	smg5	89	33.626	ENSOCUG00000023338	-	99	33.407	Oryctolagus_cuniculus
ENSCVAG00000000529	smg5	97	61.310	ENSOCUG00000012886	SMG5	100	60.697	Oryctolagus_cuniculus
ENSCVAG00000000529	smg5	99	70.414	ENSORLG00000016239	smg5	100	71.467	Oryzias_latipes
ENSCVAG00000000529	smg5	100	76.703	ENSORLG00020013127	smg5	100	76.877	Oryzias_latipes_hni
ENSCVAG00000000529	smg5	100	76.673	ENSORLG00015019014	smg5	100	77.143	Oryzias_latipes_hsok
ENSCVAG00000000529	smg5	81	68.202	ENSOMEG00000021330	smg5	92	69.003	Oryzias_melastigma
ENSCVAG00000000529	smg5	99	60.488	ENSOGAG00000004966	SMG5	99	60.449	Otolemur_garnettii
ENSCVAG00000000529	smg5	99	61.419	ENSOARG00000005778	SMG5	99	60.916	Ovis_aries
ENSCVAG00000000529	smg5	99	35.918	ENSOARG00000011963	-	99	35.953	Ovis_aries
ENSCVAG00000000529	smg5	99	61.516	ENSPPAG00000011996	SMG5	99	60.819	Pan_paniscus
ENSCVAG00000000529	smg5	97	60.040	ENSPPRG00000011901	SMG5	100	59.640	Panthera_pardus
ENSCVAG00000000529	smg5	96	56.244	ENSPTIG00000007892	SMG5	98	56.041	Panthera_tigris_altaica
ENSCVAG00000000529	smg5	99	61.516	ENSPTRG00000049282	-	99	60.819	Pan_troglodytes
ENSCVAG00000000529	smg5	99	61.516	ENSPTRG00000023925	SMG5	99	60.819	Pan_troglodytes
ENSCVAG00000000529	smg5	99	61.710	ENSPANG00000011201	SMG5	99	61.014	Papio_anubis
ENSCVAG00000000529	smg5	100	70.126	ENSPKIG00000009402	smg5	100	69.544	Paramormyrops_kingsleyae
ENSCVAG00000000529	smg5	97	60.669	ENSPSIG00000015198	SMG5	100	60.686	Pelodiscus_sinensis
ENSCVAG00000000529	smg5	99	64.668	ENSPMGG00000010465	smg5	100	64.852	Periophthalmus_magnuspinnatus
ENSCVAG00000000529	smg5	56	33.443	ENSPEMG00000010022	-	68	39.753	Peromyscus_maniculatus_bairdii
ENSCVAG00000000529	smg5	99	61.230	ENSPEMG00000001819	Smg5	99	60.861	Peromyscus_maniculatus_bairdii
ENSCVAG00000000529	smg5	98	46.124	ENSPMAG00000000410	smg5	99	46.257	Petromyzon_marinus
ENSCVAG00000000529	smg5	99	60.254	ENSPCIG00000018938	SMG5	99	59.745	Phascolarctos_cinereus
ENSCVAG00000000529	smg5	99	75.986	ENSPFOG00000010191	smg5	100	76.523	Poecilia_formosa
ENSCVAG00000000529	smg5	99	75.986	ENSPLAG00000009332	smg5	100	76.344	Poecilia_latipinna
ENSCVAG00000000529	smg5	100	82.816	ENSPMEG00000014105	smg5	100	82.816	Poecilia_mexicana
ENSCVAG00000000529	smg5	99	75.269	ENSPREG00000017713	smg5	100	76.344	Poecilia_reticulata
ENSCVAG00000000529	smg5	99	61.613	ENSPPYG00000000723	SMG5	99	60.916	Pongo_abelii
ENSCVAG00000000529	smg5	81	58.547	ENSPCAG00000008412	SMG5	81	80.000	Procavia_capensis
ENSCVAG00000000529	smg5	99	62.066	ENSPCOG00000004741	SMG5	99	61.653	Propithecus_coquereli
ENSCVAG00000000529	smg5	90	82.292	ENSPVAG00000016748	SMG5	89	82.292	Pteropus_vampyrus
ENSCVAG00000000529	smg5	99	72.365	ENSPNYG00000013397	smg5	100	72.276	Pundamilia_nyererei
ENSCVAG00000000529	smg5	99	69.022	ENSPNAG00000028363	smg5	100	69.565	Pygocentrus_nattereri
ENSCVAG00000000529	smg5	99	61.171	ENSRNOG00000019590	Smg5	99	60.704	Rattus_norvegicus
ENSCVAG00000000529	smg5	99	61.710	ENSRBIG00000027428	SMG5	99	60.819	Rhinopithecus_bieti
ENSCVAG00000000529	smg5	99	61.613	ENSRROG00000030035	SMG5	99	60.721	Rhinopithecus_roxellana
ENSCVAG00000000529	smg5	99	61.516	ENSSBOG00000033339	SMG5	99	60.819	Saimiri_boliviensis_boliviensis
ENSCVAG00000000529	smg5	97	59.842	ENSSHAG00000014163	SMG5	100	59.226	Sarcophilus_harrisii
ENSCVAG00000000529	smg5	77	33.245	ENSSHAG00000000561	-	85	33.245	Sarcophilus_harrisii
ENSCVAG00000000529	smg5	100	71.996	ENSSFOG00015024175	smg5	100	71.650	Scleropages_formosus
ENSCVAG00000000529	smg5	99	73.473	ENSSMAG00000013059	smg5	100	73.200	Scophthalmus_maximus
ENSCVAG00000000529	smg5	99	72.124	ENSSDUG00000007122	smg5	100	72.478	Seriola_dumerili
ENSCVAG00000000529	smg5	99	73.268	ENSSLDG00000011418	smg5	100	72.913	Seriola_lalandi_dorsalis
ENSCVAG00000000529	smg5	83	87.586	ENSSARG00000012484	SMG5	90	87.586	Sorex_araneus
ENSCVAG00000000529	smg5	93	57.500	ENSSPUG00000002260	SMG5	100	57.272	Sphenodon_punctatus
ENSCVAG00000000529	smg5	99	80.539	ENSSPAG00000014266	smg5	98	80.339	Stegastes_partitus
ENSCVAG00000000529	smg5	99	62.475	ENSSSCG00000006490	-	99	61.762	Sus_scrofa
ENSCVAG00000000529	smg5	99	49.849	ENSSSCG00000039308	-	99	48.889	Sus_scrofa
ENSCVAG00000000529	smg5	99	61.891	ENSTGUG00000003748	-	99	61.224	Taeniopygia_guttata
ENSCVAG00000000529	smg5	100	71.896	ENSTRUG00000012580	smg5	100	72.254	Takifugu_rubripes
ENSCVAG00000000529	smg5	100	73.821	ENSTNIG00000010303	smg5	100	73.147	Tetraodon_nigroviridis
ENSCVAG00000000529	smg5	56	63.325	ENSTBEG00000002777	SMG5	56	62.637	Tupaia_belangeri
ENSCVAG00000000529	smg5	99	57.240	ENSTTRG00000001401	SMG5	99	56.530	Tursiops_truncatus
ENSCVAG00000000529	smg5	99	59.547	ENSUAMG00000013721	SMG5	99	59.921	Ursus_americanus
ENSCVAG00000000529	smg5	99	56.219	ENSUMAG00000018041	SMG5	99	55.976	Ursus_maritimus
ENSCVAG00000000529	smg5	91	70.792	ENSVPAG00000009446	SMG5	99	52.390	Vicugna_pacos
ENSCVAG00000000529	smg5	99	60.413	ENSVVUG00000005887	SMG5	99	60.648	Vulpes_vulpes
ENSCVAG00000000529	smg5	78	55.762	ENSXETG00000033791	SMG5	99	55.514	Xenopus_tropicalis
ENSCVAG00000000529	smg5	75	95.604	ENSXCOG00000004379	smg5	95	95.604	Xiphophorus_couchianus
ENSCVAG00000000529	smg5	100	82.728	ENSXMAG00000013499	smg5	100	82.515	Xiphophorus_maculatus