EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000000569 (Gene tree)
Gene ID: 107081389
Gene Symbol: rtcb
Alias: zgc:76871
Full Name: RNA 2'%2C3'-cyclic phosphate and 5'-OH ligase
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 2723 bases
Position: chrJPKM01106288.1:326-3048
Accession: 107081389
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000032247	RtcB	PF01139.17	2.7e-134	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000027870	-	2196	XM_015369575	ENSCVAP00000032247	439 (aa)	XP_015225061	-

Gene Model

Click here to download ENSCVAG00000000569's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000000569's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000000569	rtcb	95	93.269	ENSG00000100220	RTCB	82	93.269	Homo_sapiens
ENSCVAG00000000569	rtcb	95	96.394	ENSAPOG00000006040	rtcb	82	96.394	Acanthochromis_polyacanthus
ENSCVAG00000000569	rtcb	95	93.269	ENSAMEG00000016152	RTCB	82	93.269	Ailuropoda_melanoleuca
ENSCVAG00000000569	rtcb	91	96.509	ENSACIG00000009083	rtcb	83	96.509	Amphilophus_citrinellus
ENSCVAG00000000569	rtcb	95	96.394	ENSAOCG00000005662	rtcb	90	96.394	Amphiprion_ocellaris
ENSCVAG00000000569	rtcb	95	96.394	ENSAPEG00000024701	rtcb	82	96.394	Amphiprion_percula
ENSCVAG00000000569	rtcb	93	98.771	ENSAPEG00000024653	rtcb	86	98.771	Amphiprion_percula
ENSCVAG00000000569	rtcb	95	96.154	ENSATEG00000000618	rtcb	82	96.154	Anabas_testudineus
ENSCVAG00000000569	rtcb	95	93.269	ENSACAG00000014817	RTCB	80	93.269	Anolis_carolinensis
ENSCVAG00000000569	rtcb	95	77.644	ENSANAG00000018191	-	74	77.644	Aotus_nancymaae
ENSCVAG00000000569	rtcb	60	78.491	ENSANAG00000023724	-	58	78.491	Aotus_nancymaae
ENSCVAG00000000569	rtcb	95	94.471	ENSACLG00000008367	rtcb	90	94.471	Astatotilapia_calliptera
ENSCVAG00000000569	rtcb	93	95.366	ENSAMXG00000042320	rtcb	81	95.366	Astyanax_mexicanus
ENSCVAG00000000569	rtcb	95	93.269	ENSBTAG00000011070	RTCB	82	93.269	Bos_taurus
ENSCVAG00000000569	rtcb	93	74.878	WBGene00008877	rtcb-1	81	74.878	Caenorhabditis_elegans
ENSCVAG00000000569	rtcb	95	93.269	ENSCJAG00000006128	RTCB	82	93.269	Callithrix_jacchus
ENSCVAG00000000569	rtcb	95	89.183	ENSCAFG00000010789	-	82	89.183	Canis_familiaris
ENSCVAG00000000569	rtcb	95	93.269	ENSCAFG00000001785	RTCB	82	93.269	Canis_familiaris
ENSCVAG00000000569	rtcb	95	93.269	ENSCAFG00020004890	-	82	93.269	Canis_lupus_dingo
ENSCVAG00000000569	rtcb	85	91.733	ENSCAFG00020018953	-	85	91.733	Canis_lupus_dingo
ENSCVAG00000000569	rtcb	95	93.269	ENSCHIG00000027009	-	82	93.269	Capra_hircus
ENSCVAG00000000569	rtcb	95	93.269	ENSTSYG00000012320	RTCB	82	93.269	Carlito_syrichta
ENSCVAG00000000569	rtcb	95	93.029	ENSCAPG00000011647	RTCB	84	93.029	Cavia_aperea
ENSCVAG00000000569	rtcb	95	93.269	ENSCCAG00000000618	RTCB	82	93.269	Cebus_capucinus
ENSCVAG00000000569	rtcb	95	93.029	ENSCATG00000033424	RTCB	82	93.029	Cercocebus_atys
ENSCVAG00000000569	rtcb	95	93.269	ENSCLAG00000007997	RTCB	82	93.269	Chinchilla_lanigera
ENSCVAG00000000569	rtcb	95	93.029	ENSCSAG00000008351	RTCB	82	93.029	Chlorocebus_sabaeus
ENSCVAG00000000569	rtcb	95	76.923	ENSCHOG00000009123	RTCB	82	76.923	Choloepus_hoffmanni
ENSCVAG00000000569	rtcb	95	92.788	ENSCPBG00000023184	RTCB	82	92.788	Chrysemys_picta_bellii
ENSCVAG00000000569	rtcb	95	85.577	ENSCING00000003830	-	83	85.577	Ciona_intestinalis
ENSCVAG00000000569	rtcb	93	85.610	ENSCSAVG00000008124	-	90	84.304	Ciona_savignyi
ENSCVAG00000000569	rtcb	93	94.853	ENSCANG00000001891	RTCB	84	94.853	Colobus_angolensis_palliatus
ENSCVAG00000000569	rtcb	95	93.029	ENSCGRG00001011173	Rtcb	82	93.029	Cricetulus_griseus_chok1gshd
ENSCVAG00000000569	rtcb	95	93.269	ENSCGRG00000009587	-	85	93.269	Cricetulus_griseus_crigri
ENSCVAG00000000569	rtcb	95	94.952	ENSCSEG00000003986	rtcb	82	94.952	Cynoglossus_semilaevis
ENSCVAG00000000569	rtcb	95	95.192	ENSDARG00000101047	rtcb	82	95.192	Danio_rerio
ENSCVAG00000000569	rtcb	77	91.520	ENSDNOG00000012425	RTCB	84	91.520	Dasypus_novemcinctus
ENSCVAG00000000569	rtcb	95	92.788	ENSDORG00000010855	Rtcb	82	92.788	Dipodomys_ordii
ENSCVAG00000000569	rtcb	93	87.073	FBgn0032781	RtcB	81	87.073	Drosophila_melanogaster
ENSCVAG00000000569	rtcb	95	86.058	ENSETEG00000001988	RTCB	82	86.058	Echinops_telfairi
ENSCVAG00000000569	rtcb	95	83.654	ENSEBUG00000014235	rtcb	82	83.654	Eptatretus_burgeri
ENSCVAG00000000569	rtcb	95	93.269	ENSEASG00005019059	RTCB	82	93.269	Equus_asinus_asinus
ENSCVAG00000000569	rtcb	95	93.269	ENSECAG00000023998	RTCB	82	93.269	Equus_caballus
ENSCVAG00000000569	rtcb	83	94.795	ENSEEUG00000006251	RTCB	82	94.795	Erinaceus_europaeus
ENSCVAG00000000569	rtcb	93	80.876	ENSELUG00000009275	rtcb	81	80.876	Esox_lucius
ENSCVAG00000000569	rtcb	95	93.269	ENSFCAG00000026480	RTCB	82	93.269	Felis_catus
ENSCVAG00000000569	rtcb	95	93.750	ENSFALG00000013334	RTCB	82	93.750	Ficedula_albicollis
ENSCVAG00000000569	rtcb	95	93.269	ENSFDAG00000018150	RTCB	82	93.269	Fukomys_damarensis
ENSCVAG00000000569	rtcb	95	96.394	ENSFHEG00000009595	rtcb	82	96.394	Fundulus_heteroclitus
ENSCVAG00000000569	rtcb	95	91.827	ENSGMOG00000018882	rtcb	82	91.827	Gadus_morhua
ENSCVAG00000000569	rtcb	95	93.510	ENSGALG00000012611	RTCB	82	93.510	Gallus_gallus
ENSCVAG00000000569	rtcb	95	97.356	ENSGAFG00000004198	rtcb	82	97.356	Gambusia_affinis
ENSCVAG00000000569	rtcb	95	94.712	ENSGACG00000000586	rtcb	82	94.712	Gasterosteus_aculeatus
ENSCVAG00000000569	rtcb	94	93.447	ENSGAGG00000019133	RTCB	86	93.447	Gopherus_agassizii
ENSCVAG00000000569	rtcb	95	93.269	ENSGGOG00000011402	RTCB	82	93.269	Gorilla_gorilla
ENSCVAG00000000569	rtcb	95	94.471	ENSHBUG00000020571	rtcb	82	94.471	Haplochromis_burtoni
ENSCVAG00000000569	rtcb	95	93.269	ENSHGLG00000004492	RTCB	82	93.269	Heterocephalus_glaber_female
ENSCVAG00000000569	rtcb	92	66.667	ENSHGLG00000001066	-	85	66.667	Heterocephalus_glaber_female
ENSCVAG00000000569	rtcb	95	93.269	ENSHGLG00100008965	RTCB	82	93.269	Heterocephalus_glaber_male
ENSCVAG00000000569	rtcb	95	93.780	ENSHCOG00000006450	rtcb	82	93.780	Hippocampus_comes
ENSCVAG00000000569	rtcb	95	93.750	ENSIPUG00000015443	rtcb	82	93.750	Ictalurus_punctatus
ENSCVAG00000000569	rtcb	95	93.269	ENSSTOG00000003878	RTCB	82	93.269	Ictidomys_tridecemlineatus
ENSCVAG00000000569	rtcb	95	93.269	ENSJJAG00000010667	Rtcb	82	93.269	Jaculus_jaculus
ENSCVAG00000000569	rtcb	95	96.875	ENSKMAG00000013178	rtcb	82	96.875	Kryptolebias_marmoratus
ENSCVAG00000000569	rtcb	95	95.433	ENSLBEG00000010566	RTCB	82	95.433	Labrus_bergylta
ENSCVAG00000000569	rtcb	95	93.990	ENSLBEG00000000214	rtcb	82	93.990	Labrus_bergylta
ENSCVAG00000000569	rtcb	95	93.750	ENSLACG00000013033	RTCB	82	93.750	Latimeria_chalumnae
ENSCVAG00000000569	rtcb	95	94.712	ENSLOCG00000016515	rtcb	82	94.712	Lepisosteus_oculatus
ENSCVAG00000000569	rtcb	95	93.029	ENSLAFG00000002082	RTCB	82	93.029	Loxodonta_africana
ENSCVAG00000000569	rtcb	95	93.029	ENSMFAG00000034419	RTCB	82	93.029	Macaca_fascicularis
ENSCVAG00000000569	rtcb	95	93.029	ENSMMUG00000006720	RTCB	82	93.029	Macaca_mulatta
ENSCVAG00000000569	rtcb	95	93.029	ENSMNEG00000040669	RTCB	82	93.029	Macaca_nemestrina
ENSCVAG00000000569	rtcb	95	93.029	ENSMLEG00000040505	RTCB	82	93.029	Mandrillus_leucophaeus
ENSCVAG00000000569	rtcb	93	98.529	ENSMAMG00000020676	rtcb	82	96.394	Mastacembelus_armatus
ENSCVAG00000000569	rtcb	95	94.471	ENSMZEG00005018942	rtcb	82	94.471	Maylandia_zebra
ENSCVAG00000000569	rtcb	95	93.062	ENSMGAG00000012805	RTCB	82	93.062	Meleagris_gallopavo
ENSCVAG00000000569	rtcb	55	95.455	ENSMAUG00000008301	Rtcb	81	95.455	Mesocricetus_auratus
ENSCVAG00000000569	rtcb	95	93.269	ENSMICG00000013303	-	82	93.269	Microcebus_murinus
ENSCVAG00000000569	rtcb	95	72.596	ENSMICG00000036677	-	79	74.390	Microcebus_murinus
ENSCVAG00000000569	rtcb	95	93.029	ENSMOCG00000002440	Rtcb	82	93.029	Microtus_ochrogaster
ENSCVAG00000000569	rtcb	95	95.913	ENSMMOG00000005987	rtcb	82	95.913	Mola_mola
ENSCVAG00000000569	rtcb	95	93.029	ENSMODG00000001414	RTCB	82	93.029	Monodelphis_domestica
ENSCVAG00000000569	rtcb	95	96.394	ENSMALG00000007603	rtcb	82	96.394	Monopterus_albus
ENSCVAG00000000569	rtcb	95	93.269	MGP_CAROLIEiJ_G0015689	Rtcb	82	93.269	Mus_caroli
ENSCVAG00000000569	rtcb	95	93.269	ENSMUSG00000001783	Rtcb	82	93.269	Mus_musculus
ENSCVAG00000000569	rtcb	95	93.269	MGP_PahariEiJ_G0031396	Rtcb	82	93.269	Mus_pahari
ENSCVAG00000000569	rtcb	95	93.269	MGP_SPRETEiJ_G0016507	Rtcb	82	93.269	Mus_spretus
ENSCVAG00000000569	rtcb	95	93.269	ENSMPUG00000012285	RTCB	82	93.269	Mustela_putorius_furo
ENSCVAG00000000569	rtcb	92	95.567	ENSMLUG00000007803	RTCB	80	95.567	Myotis_lucifugus
ENSCVAG00000000569	rtcb	63	89.778	ENSNGAG00000005093	Rtcb	74	89.778	Nannospalax_galili
ENSCVAG00000000569	rtcb	95	94.712	ENSNBRG00000017202	rtcb	82	94.712	Neolamprologus_brichardi
ENSCVAG00000000569	rtcb	95	93.269	ENSNLEG00000004960	RTCB	82	93.269	Nomascus_leucogenys
ENSCVAG00000000569	rtcb	82	75.623	ENSMEUG00000007809	-	71	75.623	Notamacropus_eugenii
ENSCVAG00000000569	rtcb	69	100.000	ENSOPRG00000003488	RTCB	65	100.000	Ochotona_princeps
ENSCVAG00000000569	rtcb	80	93.421	ENSODEG00000013033	-	83	93.421	Octodon_degus
ENSCVAG00000000569	rtcb	86	63.757	ENSODEG00000005042	-	74	63.757	Octodon_degus
ENSCVAG00000000569	rtcb	100	92.534	ENSONIG00000007474	rtcb	87	92.534	Oreochromis_niloticus
ENSCVAG00000000569	rtcb	95	93.029	ENSOANG00000005524	RTCB	82	93.029	Ornithorhynchus_anatinus
ENSCVAG00000000569	rtcb	92	95.567	ENSOCUG00000008270	RTCB	83	95.567	Oryctolagus_cuniculus
ENSCVAG00000000569	rtcb	95	96.394	ENSORLG00000020093	rtcb	82	96.394	Oryzias_latipes
ENSCVAG00000000569	rtcb	95	96.394	ENSORLG00020003706	rtcb	87	96.394	Oryzias_latipes_hni
ENSCVAG00000000569	rtcb	95	96.635	ENSORLG00015002968	rtcb	82	96.635	Oryzias_latipes_hsok
ENSCVAG00000000569	rtcb	95	95.913	ENSOMEG00000021278	rtcb	82	95.913	Oryzias_melastigma
ENSCVAG00000000569	rtcb	95	92.788	ENSOGAG00000001425	RTCB	82	92.788	Otolemur_garnettii
ENSCVAG00000000569	rtcb	95	93.269	ENSOARG00000018008	RTCB	82	93.269	Ovis_aries
ENSCVAG00000000569	rtcb	95	93.269	ENSPPAG00000028667	RTCB	82	93.269	Pan_paniscus
ENSCVAG00000000569	rtcb	95	93.269	ENSPPRG00000004038	RTCB	82	93.269	Panthera_pardus
ENSCVAG00000000569	rtcb	95	87.981	ENSPTIG00000020499	RTCB	85	89.183	Panthera_tigris_altaica
ENSCVAG00000000569	rtcb	95	93.269	ENSPTRG00000014287	RTCB	82	93.269	Pan_troglodytes
ENSCVAG00000000569	rtcb	95	93.029	ENSPANG00000016035	RTCB	82	93.029	Papio_anubis
ENSCVAG00000000569	rtcb	95	93.750	ENSPKIG00000001881	rtcb	82	93.750	Paramormyrops_kingsleyae
ENSCVAG00000000569	rtcb	95	92.548	ENSPSIG00000011690	RTCB	90	92.548	Pelodiscus_sinensis
ENSCVAG00000000569	rtcb	95	95.673	ENSPMGG00000016672	rtcb	82	95.673	Periophthalmus_magnuspinnatus
ENSCVAG00000000569	rtcb	95	93.269	ENSPEMG00000019548	Rtcb	82	93.269	Peromyscus_maniculatus_bairdii
ENSCVAG00000000569	rtcb	95	90.385	ENSPMAG00000005657	rtcb	82	90.385	Petromyzon_marinus
ENSCVAG00000000569	rtcb	95	93.029	ENSPCIG00000009467	RTCB	82	93.029	Phascolarctos_cinereus
ENSCVAG00000000569	rtcb	95	97.596	ENSPFOG00000003058	rtcb	82	97.596	Poecilia_formosa
ENSCVAG00000000569	rtcb	95	97.596	ENSPLAG00000017663	rtcb	82	97.596	Poecilia_latipinna
ENSCVAG00000000569	rtcb	95	97.596	ENSPMEG00000006227	rtcb	82	97.596	Poecilia_mexicana
ENSCVAG00000000569	rtcb	95	97.356	ENSPREG00000018467	rtcb	82	97.356	Poecilia_reticulata
ENSCVAG00000000569	rtcb	95	93.269	ENSPPYG00000011752	RTCB	82	93.269	Pongo_abelii
ENSCVAG00000000569	rtcb	92	76.658	ENSPCAG00000013641	RTCB	86	76.658	Procavia_capensis
ENSCVAG00000000569	rtcb	95	93.269	ENSPCOG00000017243	RTCB	82	93.269	Propithecus_coquereli
ENSCVAG00000000569	rtcb	92	95.309	ENSPVAG00000002380	RTCB	87	95.309	Pteropus_vampyrus
ENSCVAG00000000569	rtcb	95	94.471	ENSPNYG00000022760	rtcb	82	94.471	Pundamilia_nyererei
ENSCVAG00000000569	rtcb	95	94.231	ENSPNAG00000009209	rtcb	84	94.231	Pygocentrus_nattereri
ENSCVAG00000000569	rtcb	95	93.269	ENSRNOG00000004813	Rtcb	82	93.269	Rattus_norvegicus
ENSCVAG00000000569	rtcb	95	83.213	ENSRBIG00000042090	RTCB	82	83.213	Rhinopithecus_bieti
ENSCVAG00000000569	rtcb	93	90.976	ENSSBOG00000020085	-	82	90.976	Saimiri_boliviensis_boliviensis
ENSCVAG00000000569	rtcb	95	93.269	ENSSHAG00000016277	RTCB	88	93.269	Sarcophilus_harrisii
ENSCVAG00000000569	rtcb	95	92.308	ENSSFOG00015011572	RTCB	82	92.308	Scleropages_formosus
ENSCVAG00000000569	rtcb	95	95.192	ENSSFOG00015000763	rtcb	82	95.192	Scleropages_formosus
ENSCVAG00000000569	rtcb	99	91.553	ENSSMAG00000005096	rtcb	84	91.553	Scophthalmus_maximus
ENSCVAG00000000569	rtcb	95	94.952	ENSSDUG00000012605	rtcb	82	94.952	Seriola_dumerili
ENSCVAG00000000569	rtcb	95	94.952	ENSSLDG00000019458	rtcb	82	94.952	Seriola_lalandi_dorsalis
ENSCVAG00000000569	rtcb	57	74.800	ENSSARG00000004799	-	53	74.800	Sorex_araneus
ENSCVAG00000000569	rtcb	95	92.308	ENSSPUG00000012814	RTCB	82	92.308	Sphenodon_punctatus
ENSCVAG00000000569	rtcb	95	96.394	ENSSPAG00000004623	rtcb	82	96.394	Stegastes_partitus
ENSCVAG00000000569	rtcb	95	93.269	ENSSSCG00000000158	RTCB	82	93.269	Sus_scrofa
ENSCVAG00000000569	rtcb	95	93.750	ENSTGUG00000010947	RTCB	82	93.750	Taeniopygia_guttata
ENSCVAG00000000569	rtcb	95	95.192	ENSTRUG00000009880	rtcb	91	95.192	Takifugu_rubripes
ENSCVAG00000000569	rtcb	95	93.750	ENSTNIG00000002484	rtcb	82	93.750	Tetraodon_nigroviridis
ENSCVAG00000000569	rtcb	95	83.413	ENSTBEG00000004418	RTCB	82	83.413	Tupaia_belangeri
ENSCVAG00000000569	rtcb	92	95.062	ENSTTRG00000006417	RTCB	86	95.062	Tursiops_truncatus
ENSCVAG00000000569	rtcb	95	93.269	ENSUAMG00000022792	RTCB	82	93.269	Ursus_americanus
ENSCVAG00000000569	rtcb	95	93.269	ENSUMAG00000017225	RTCB	82	93.269	Ursus_maritimus
ENSCVAG00000000569	rtcb	95	93.269	ENSVPAG00000005375	RTCB	82	93.269	Vicugna_pacos
ENSCVAG00000000569	rtcb	95	93.269	ENSVVUG00000023408	RTCB	94	92.689	Vulpes_vulpes
ENSCVAG00000000569	rtcb	95	92.548	ENSXETG00000011523	rtcb	82	92.548	Xenopus_tropicalis
ENSCVAG00000000569	rtcb	95	97.356	ENSXMAG00000002855	rtcb	82	97.356	Xiphophorus_maculatus