EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000000578 (Gene tree)
Gene ID: 107088958
Gene Symbol: -
Alias: -
Full Name: uncharacterized LOC107088958
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 3559 bases
Position: chrKL652734.1:977192-980750
Accession: 107088958
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000019141	PABP	PF00658.18	6e-44	1	3
ENSCVAP00000019141	PABP	PF00658.18	6e-44	2	3
ENSCVAP00000019141	PABP	PF00658.18	6e-44	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000028254	-	1713	XM_015381434	ENSCVAP00000019141	216 (aa)	XP_015236920	UPI0007424EEF

Gene Model

Click here to download ENSCVAG00000000578's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000000578's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000000578	-	99	76.168	ENSAPOG00000023881	-	100	76.168	Acanthochromis_polyacanthus
ENSCVAG00000000578	-	99	75.701	ENSAOCG00000019884	-	100	75.701	Amphiprion_ocellaris
ENSCVAG00000000578	-	99	75.701	ENSAPEG00000020987	-	100	75.701	Amphiprion_percula
ENSCVAG00000000578	-	99	75.926	ENSATEG00000013831	-	100	75.814	Anabas_testudineus
ENSCVAG00000000578	-	100	74.537	ENSACLG00000027916	-	100	74.537	Astatotilapia_calliptera
ENSCVAG00000000578	-	99	58.525	ENSAMXG00000041484	-	95	58.525	Astyanax_mexicanus
ENSCVAG00000000578	-	95	70.053	ENSCSEG00000001317	-	100	70.053	Cynoglossus_semilaevis
ENSCVAG00000000578	-	99	64.651	ENSELUG00000001731	-	80	64.651	Esox_lucius
ENSCVAG00000000578	-	100	83.333	ENSFHEG00000007741	-	100	83.333	Fundulus_heteroclitus
ENSCVAG00000000578	-	98	76.374	ENSGAFG00000012983	-	66	76.374	Gambusia_affinis
ENSCVAG00000000578	-	99	71.628	ENSHBUG00000000185	-	60	69.767	Haplochromis_burtoni
ENSCVAG00000000578	-	98	65.421	ENSHCOG00000003117	-	99	65.421	Hippocampus_comes
ENSCVAG00000000578	-	99	79.812	ENSKMAG00000011397	-	99	79.812	Kryptolebias_marmoratus
ENSCVAG00000000578	-	99	76.636	ENSLBEG00000027847	-	96	76.636	Labrus_bergylta
ENSCVAG00000000578	-	92	59.091	ENSLOCG00000003085	-	99	56.962	Lepisosteus_oculatus
ENSCVAG00000000578	-	99	80.282	ENSMAMG00000017628	-	100	79.907	Mastacembelus_armatus
ENSCVAG00000000578	-	95	69.231	ENSMMOG00000004490	-	91	69.231	Mola_mola
ENSCVAG00000000578	-	98	78.199	ENSMALG00000004586	-	99	78.199	Monopterus_albus
ENSCVAG00000000578	-	95	72.626	ENSNBRG00000006752	-	74	70.391	Neolamprologus_brichardi
ENSCVAG00000000578	-	93	59.000	ENSPKIG00000005307	-	93	59.434	Paramormyrops_kingsleyae
ENSCVAG00000000578	-	96	64.641	ENSPMGG00000004590	-	96	64.641	Periophthalmus_magnuspinnatus
ENSCVAG00000000578	-	98	85.849	ENSPFOG00000023453	-	99	85.849	Poecilia_formosa
ENSCVAG00000000578	-	100	85.185	ENSPLAG00000003198	-	100	85.185	Poecilia_latipinna
ENSCVAG00000000578	-	97	76.667	ENSPMEG00000022008	-	83	76.667	Poecilia_mexicana
ENSCVAG00000000578	-	100	77.778	ENSPREG00000001981	-	99	77.778	Poecilia_reticulata
ENSCVAG00000000578	-	95	72.892	ENSPNYG00000004740	-	85	70.482	Pundamilia_nyererei
ENSCVAG00000000578	-	85	47.668	ENSPNAG00000018692	-	73	46.114	Pygocentrus_nattereri
ENSCVAG00000000578	-	98	60.849	ENSSFOG00015001322	-	95	60.849	Scleropages_formosus
ENSCVAG00000000578	-	98	76.303	ENSSMAG00000008778	-	98	76.303	Scophthalmus_maximus
ENSCVAG00000000578	-	99	78.972	ENSSDUG00000015116	-	100	78.972	Seriola_dumerili
ENSCVAG00000000578	-	99	78.505	ENSSLDG00000000425	-	100	78.505	Seriola_lalandi_dorsalis
ENSCVAG00000000578	-	99	78.037	ENSSPAG00000015141	-	100	78.037	Stegastes_partitus
ENSCVAG00000000578	-	99	70.698	ENSTRUG00000021899	-	99	70.698	Takifugu_rubripes
ENSCVAG00000000578	-	99	68.075	ENSTNIG00000002576	-	99	68.075	Tetraodon_nigroviridis
ENSCVAG00000000578	-	100	66.204	ENSXCOG00000001548	-	98	65.741	Xiphophorus_couchianus
ENSCVAG00000000578	-	100	86.111	ENSXMAG00000021863	-	100	86.111	Xiphophorus_maculatus