EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000001150 (Gene tree)
Gene ID: 107100231
Gene Symbol: si:dkey-13a21.4
Alias: zgc:110195
Full Name: ras-related protein Rab-7a-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 7687 bases
Position: chrKL652529.1:1889056-1896742
Accession: 107100231
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000020036	MMR_HSR1	PF01926.23	6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000015374	-	3453	XM_015398649	ENSCVAP00000020036	204 (aa)	XP_015254135	UPI000742CAD2

Gene Model

Click here to download ENSCVAG00000001150's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000001150's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000001150	si:dkey-13a21.4	96	35.323	ENSCVAG00000001618	rab41	92	35.323
ENSCVAG00000001150	si:dkey-13a21.4	76	30.128	ENSCVAG00000006083	si:cabz01085950.1	75	30.128
ENSCVAG00000001150	si:dkey-13a21.4	77	38.125	ENSCVAG00000014915	RAB39B	74	38.125
ENSCVAG00000001150	si:dkey-13a21.4	79	34.969	ENSCVAG00000017623	rab2a	75	34.969
ENSCVAG00000001150	si:dkey-13a21.4	74	30.247	ENSCVAG00000013135	rasl11a	61	30.247
ENSCVAG00000001150	si:dkey-13a21.4	96	36.765	ENSCVAG00000011665	rab33a	72	36.765
ENSCVAG00000001150	si:dkey-13a21.4	97	32.692	ENSCVAG00000008276	RAB15	97	32.692
ENSCVAG00000001150	si:dkey-13a21.4	96	33.831	ENSCVAG00000004751	rab6bb	94	33.831
ENSCVAG00000001150	si:dkey-13a21.4	75	37.179	ENSCVAG00000019227	zgc:101559	65	37.179
ENSCVAG00000001150	si:dkey-13a21.4	71	31.034	ENSCVAG00000008670	hrasb	80	32.051
ENSCVAG00000001150	si:dkey-13a21.4	98	49.020	ENSCVAG00000005429	-	99	49.020
ENSCVAG00000001150	si:dkey-13a21.4	77	33.125	ENSCVAG00000019718	-	71	33.125
ENSCVAG00000001150	si:dkey-13a21.4	96	34.328	ENSCVAG00000012889	rab6ba	94	34.328
ENSCVAG00000001150	si:dkey-13a21.4	88	34.973	ENSCVAG00000018191	rab34a	68	34.973
ENSCVAG00000001150	si:dkey-13a21.4	73	40.268	ENSCVAG00000015451	rab18a	72	40.268
ENSCVAG00000001150	si:dkey-13a21.4	79	38.272	ENSCVAG00000009222	zgc:171927	74	38.272
ENSCVAG00000001150	si:dkey-13a21.4	81	34.524	ENSCVAG00000003539	rab12	67	34.706
ENSCVAG00000001150	si:dkey-13a21.4	83	36.257	ENSCVAG00000003537	si:dkey-16l2.16	79	36.257
ENSCVAG00000001150	si:dkey-13a21.4	75	39.241	ENSCVAG00000000862	-	69	39.241
ENSCVAG00000001150	si:dkey-13a21.4	77	36.025	ENSCVAG00000017064	si:dkey-34d22.5	71	36.025
ENSCVAG00000001150	si:dkey-13a21.4	83	41.520	ENSCVAG00000012806	rab35b	83	41.520
ENSCVAG00000001150	si:dkey-13a21.4	79	34.969	ENSCVAG00000008239	rab5aa	74	34.969
ENSCVAG00000001150	si:dkey-13a21.4	77	34.177	ENSCVAG00000008126	-	73	34.177
ENSCVAG00000001150	si:dkey-13a21.4	97	50.746	ENSCVAG00000000281	RAB7A	97	50.746
ENSCVAG00000001150	si:dkey-13a21.4	95	31.795	ENSCVAG00000014416	-	91	31.795
ENSCVAG00000001150	si:dkey-13a21.4	79	31.098	ENSCVAG00000004027	rheb	87	31.098
ENSCVAG00000001150	si:dkey-13a21.4	82	50.000	ENSCVAG00000021826	rab9b	83	50.000
ENSCVAG00000001150	si:dkey-13a21.4	85	33.714	ENSCVAG00000022353	rab14	80	33.714
ENSCVAG00000001150	si:dkey-13a21.4	77	33.125	ENSCVAG00000019751	-	71	33.125
ENSCVAG00000001150	si:dkey-13a21.4	77	37.736	ENSCVAG00000018433	rab22a	80	37.736
ENSCVAG00000001150	si:dkey-13a21.4	91	35.484	ENSCVAG00000020501	rab23	77	35.583
ENSCVAG00000001150	si:dkey-13a21.4	81	34.302	ENSCVAG00000014038	RAB29	81	34.302
ENSCVAG00000001150	si:dkey-13a21.4	95	33.505	ENSCVAG00000022649	-	95	33.505
ENSCVAG00000001150	si:dkey-13a21.4	86	39.205	ENSCVAG00000018085	rab30	85	39.205
ENSCVAG00000001150	si:dkey-13a21.4	77	33.125	ENSCVAG00000017021	-	71	33.125
ENSCVAG00000001150	si:dkey-13a21.4	77	34.177	ENSCVAG00000013878	rab11a	72	34.177
ENSCVAG00000001150	si:dkey-13a21.4	67	30.147	ENSCVAG00000006062	KRAS	80	30.769
ENSCVAG00000001150	si:dkey-13a21.4	77	37.736	ENSCVAG00000015862	-	73	37.736
ENSCVAG00000001150	si:dkey-13a21.4	96	33.831	ENSCVAG00000022249	rab6a	94	33.831
ENSCVAG00000001150	si:dkey-13a21.4	85	34.857	ENSCVAG00000010727	rab4a	80	34.857
ENSCVAG00000001150	si:dkey-13a21.4	80	36.970	ENSCVAG00000022799	-	80	36.970
ENSCVAG00000001150	si:dkey-13a21.4	77	34.375	ENSCVAG00000020016	rab11al	71	34.375
ENSCVAG00000001150	si:dkey-13a21.4	77	33.121	ENSCVAG00000011432	rabl2	68	33.121
ENSCVAG00000001150	si:dkey-13a21.4	81	50.602	ENSCVAG00000016312	rab9a	78	50.602
ENSCVAG00000001150	si:dkey-13a21.4	75	32.258	ENSCVAG00000001281	rhebl1	82	32.258
ENSCVAG00000001150	si:dkey-13a21.4	80	36.970	ENSCVAG00000022585	-	79	36.970
ENSCVAG00000001150	si:dkey-13a21.4	79	51.235	ENSCVAG00000002953	RAB9A	81	51.235
ENSCVAG00000001150	si:dkey-13a21.4	77	36.709	ENSCVAG00000020003	rab25b	76	36.774
ENSCVAG00000001150	si:dkey-13a21.4	79	35.583	ENSCVAG00000009550	rab5c	72	35.583

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000001150	si:dkey-13a21.4	100	86.275	ENSACIG00000011024	si:dkey-13a21.4	100	86.275	Amphilophus_citrinellus
ENSCVAG00000001150	si:dkey-13a21.4	100	85.294	ENSAOCG00000020491	si:dkey-13a21.4	100	85.294	Amphiprion_ocellaris
ENSCVAG00000001150	si:dkey-13a21.4	100	85.294	ENSAPEG00000023338	si:dkey-13a21.4	92	85.294	Amphiprion_percula
ENSCVAG00000001150	si:dkey-13a21.4	100	82.353	ENSATEG00000014958	si:dkey-13a21.4	100	82.353	Anabas_testudineus
ENSCVAG00000001150	si:dkey-13a21.4	96	51.795	ENSACAG00000012345	-	97	51.795	Anolis_carolinensis
ENSCVAG00000001150	si:dkey-13a21.4	100	85.784	ENSACLG00000021109	si:dkey-13a21.4	99	85.784	Astatotilapia_calliptera
ENSCVAG00000001150	si:dkey-13a21.4	96	54.455	ENSAMXG00000032663	si:dkey-13a21.4	93	54.455	Astyanax_mexicanus
ENSCVAG00000001150	si:dkey-13a21.4	89	55.191	WBGene00004271	rab-7	100	50.239	Caenorhabditis_elegans
ENSCVAG00000001150	si:dkey-13a21.4	100	62.745	ENSDARG00000026098	si:dkey-13a21.4	99	62.745	Danio_rerio
ENSCVAG00000001150	si:dkey-13a21.4	87	52.778	ENSDNOG00000043559	-	96	50.000	Dasypus_novemcinctus
ENSCVAG00000001150	si:dkey-13a21.4	100	91.707	ENSFHEG00000002502	si:dkey-13a21.4	100	91.707	Fundulus_heteroclitus
ENSCVAG00000001150	si:dkey-13a21.4	100	89.216	ENSGAFG00000020102	si:dkey-13a21.4	100	89.216	Gambusia_affinis
ENSCVAG00000001150	si:dkey-13a21.4	100	86.275	ENSHBUG00000014023	si:dkey-13a21.4	99	86.275	Haplochromis_burtoni
ENSCVAG00000001150	si:dkey-13a21.4	86	81.818	ENSKMAG00000021039	si:dkey-13a21.4	74	81.818	Kryptolebias_marmoratus
ENSCVAG00000001150	si:dkey-13a21.4	100	82.843	ENSLBEG00000018180	si:dkey-13a21.4	100	82.843	Labrus_bergylta
ENSCVAG00000001150	si:dkey-13a21.4	100	60.194	ENSLOCG00000014749	si:dkey-13a21.4	100	60.194	Lepisosteus_oculatus
ENSCVAG00000001150	si:dkey-13a21.4	84	55.556	ENSLAFG00000028984	-	83	55.556	Loxodonta_africana
ENSCVAG00000001150	si:dkey-13a21.4	100	83.333	ENSMAMG00000021095	si:dkey-13a21.4	100	83.333	Mastacembelus_armatus
ENSCVAG00000001150	si:dkey-13a21.4	100	85.784	ENSMZEG00005010220	si:dkey-13a21.4	99	85.784	Maylandia_zebra
ENSCVAG00000001150	si:dkey-13a21.4	99	85.222	ENSNBRG00000023214	si:dkey-13a21.4	99	85.222	Neolamprologus_brichardi
ENSCVAG00000001150	si:dkey-13a21.4	100	85.294	ENSONIG00000020296	si:dkey-13a21.4	100	85.294	Oreochromis_niloticus
ENSCVAG00000001150	si:dkey-13a21.4	100	81.863	ENSORLG00000025098	si:dkey-13a21.4	100	81.863	Oryzias_latipes
ENSCVAG00000001150	si:dkey-13a21.4	100	81.863	ENSORLG00020019465	si:dkey-13a21.4	100	81.863	Oryzias_latipes_hni
ENSCVAG00000001150	si:dkey-13a21.4	100	82.353	ENSORLG00015015121	si:dkey-13a21.4	100	82.353	Oryzias_latipes_hsok
ENSCVAG00000001150	si:dkey-13a21.4	96	62.944	ENSPKIG00000008691	si:dkey-13a21.4	96	62.944	Paramormyrops_kingsleyae
ENSCVAG00000001150	si:dkey-13a21.4	98	76.500	ENSPMGG00000023170	si:dkey-13a21.4	95	76.500	Periophthalmus_magnuspinnatus
ENSCVAG00000001150	si:dkey-13a21.4	100	91.176	ENSPFOG00000015409	si:dkey-13a21.4	100	91.176	Poecilia_formosa
ENSCVAG00000001150	si:dkey-13a21.4	100	91.176	ENSPLAG00000019688	si:dkey-13a21.4	100	91.176	Poecilia_latipinna
ENSCVAG00000001150	si:dkey-13a21.4	100	91.176	ENSPMEG00000019159	si:dkey-13a21.4	100	91.176	Poecilia_mexicana
ENSCVAG00000001150	si:dkey-13a21.4	100	90.196	ENSPREG00000022241	si:dkey-13a21.4	100	90.196	Poecilia_reticulata
ENSCVAG00000001150	si:dkey-13a21.4	100	85.784	ENSPNYG00000018613	si:dkey-13a21.4	99	85.784	Pundamilia_nyererei
ENSCVAG00000001150	si:dkey-13a21.4	96	43.781	YML001W	YPT7	96	43.781	Saccharomyces_cerevisiae
ENSCVAG00000001150	si:dkey-13a21.4	96	62.245	ENSSFOG00015009566	si:dkey-13a21.4	96	62.245	Scleropages_formosus
ENSCVAG00000001150	si:dkey-13a21.4	98	83.417	ENSSMAG00000013945	si:dkey-13a21.4	97	83.417	Scophthalmus_maximus
ENSCVAG00000001150	si:dkey-13a21.4	100	86.765	ENSSDUG00000019738	si:dkey-13a21.4	100	86.765	Seriola_dumerili
ENSCVAG00000001150	si:dkey-13a21.4	100	86.765	ENSSLDG00000011597	si:dkey-13a21.4	100	86.765	Seriola_lalandi_dorsalis
ENSCVAG00000001150	si:dkey-13a21.4	96	53.846	ENSXETG00000014257	mgc75872	97	53.846	Xenopus_tropicalis