EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000001536 (Gene tree)
Gene ID: 107102672
Gene Symbol: oscp1a
Alias: oscp1|zgc:171454
Full Name: LSM10%2C U7 small nuclear RNA associated
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 390 bases
Position: chrKL653795.1:54966-55355
Accession: 107102672
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000000604	LSM	PF01423.22	1.3e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000014792	-	390	XM_015402064	ENSCVAP00000000604	129 (aa)	XP_015257550	UPI000742AC92

Gene Model

Click here to download ENSCVAG00000001536's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000001536's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000001536	oscp1a	54	32.877	ENSCVAG00000015394	si:ch73-14h10.2	69	32.877
ENSCVAG00000001536	oscp1a	57	33.333	ENSCVAG00000010601	lsm4	52	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000001536	oscp1a	91	64.167	ENSG00000181817	LSM10	98	64.167	Homo_sapiens
ENSCVAG00000001536	oscp1a	90	64.706	ENSAMEG00000019854	LSM10	97	64.706	Ailuropoda_melanoleuca
ENSCVAG00000001536	oscp1a	91	78.512	ENSACIG00000015420	oscp1a	80	78.512	Amphilophus_citrinellus
ENSCVAG00000001536	oscp1a	89	84.746	ENSAOCG00000014654	-	98	84.746	Amphiprion_ocellaris
ENSCVAG00000001536	oscp1a	85	83.636	ENSAOCG00000015607	LSM10	85	83.636	Amphiprion_ocellaris
ENSCVAG00000001536	oscp1a	89	84.746	ENSAOCG00000015618	LSM10	98	84.746	Amphiprion_ocellaris
ENSCVAG00000001536	oscp1a	89	84.746	ENSAPEG00000021845	-	98	84.746	Amphiprion_percula
ENSCVAG00000001536	oscp1a	85	83.636	ENSAPEG00000021851	LSM10	85	83.636	Amphiprion_percula
ENSCVAG00000001536	oscp1a	96	73.282	ENSATEG00000006310	oscp1a	97	73.282	Anabas_testudineus
ENSCVAG00000001536	oscp1a	87	57.391	ENSACAG00000001231	LSM10	93	57.391	Anolis_carolinensis
ENSCVAG00000001536	oscp1a	91	63.333	ENSANAG00000031489	-	98	63.333	Aotus_nancymaae
ENSCVAG00000001536	oscp1a	91	64.167	ENSANAG00000018759	-	98	64.167	Aotus_nancymaae
ENSCVAG00000001536	oscp1a	89	77.966	ENSACLG00000004728	oscp1a	96	77.966	Astatotilapia_calliptera
ENSCVAG00000001536	oscp1a	87	73.684	ENSAMXG00000025301	oscp1a	95	73.684	Astyanax_mexicanus
ENSCVAG00000001536	oscp1a	90	63.025	ENSBTAG00000024096	LSM10	98	63.025	Bos_taurus
ENSCVAG00000001536	oscp1a	91	64.167	ENSCJAG00000044880	LSM10	98	64.167	Callithrix_jacchus
ENSCVAG00000001536	oscp1a	90	64.706	ENSCAFG00000003382	LSM10	97	64.706	Canis_familiaris
ENSCVAG00000001536	oscp1a	90	64.706	ENSCAFG00020008920	LSM10	97	64.706	Canis_lupus_dingo
ENSCVAG00000001536	oscp1a	90	63.025	ENSCHIG00000009398	LSM10	98	63.025	Capra_hircus
ENSCVAG00000001536	oscp1a	90	63.866	ENSCAPG00000012567	LSM10	97	63.866	Cavia_aperea
ENSCVAG00000001536	oscp1a	90	63.866	ENSCPOG00000039302	LSM10	97	63.866	Cavia_porcellus
ENSCVAG00000001536	oscp1a	91	64.167	ENSCCAG00000018913	-	98	64.167	Cebus_capucinus
ENSCVAG00000001536	oscp1a	91	63.333	ENSCCAG00000008378	-	98	63.333	Cebus_capucinus
ENSCVAG00000001536	oscp1a	91	63.333	ENSCATG00000006589	LSM10	98	63.333	Cercocebus_atys
ENSCVAG00000001536	oscp1a	90	63.866	ENSCLAG00000008633	LSM10	97	63.866	Chinchilla_lanigera
ENSCVAG00000001536	oscp1a	91	63.333	ENSCSAG00000000134	LSM10	98	63.333	Chlorocebus_sabaeus
ENSCVAG00000001536	oscp1a	90	62.810	ENSCHOG00000008615	LSM10	97	62.810	Choloepus_hoffmanni
ENSCVAG00000001536	oscp1a	91	63.333	ENSCANG00000019928	LSM10	98	63.333	Colobus_angolensis_palliatus
ENSCVAG00000001536	oscp1a	90	65.546	ENSCGRG00001004317	-	98	65.546	Cricetulus_griseus_chok1gshd
ENSCVAG00000001536	oscp1a	80	62.037	ENSCGRG00001022673	-	88	62.037	Cricetulus_griseus_chok1gshd
ENSCVAG00000001536	oscp1a	90	65.546	ENSCGRG00000014935	-	98	65.546	Cricetulus_griseus_crigri
ENSCVAG00000001536	oscp1a	80	62.037	ENSCGRG00000015514	-	88	62.037	Cricetulus_griseus_crigri
ENSCVAG00000001536	oscp1a	89	78.814	ENSCSEG00000010374	oscp1a	79	78.814	Cynoglossus_semilaevis
ENSCVAG00000001536	oscp1a	89	70.940	ENSDARG00000101222	oscp1a	98	70.940	Danio_rerio
ENSCVAG00000001536	oscp1a	64	72.289	ENSDARG00000109563	CABZ01074453.1	96	72.289	Danio_rerio
ENSCVAG00000001536	oscp1a	91	65.833	ENSDNOG00000036662	LSM10	98	65.833	Dasypus_novemcinctus
ENSCVAG00000001536	oscp1a	90	66.387	ENSDORG00000007579	Lsm10	97	66.387	Dipodomys_ordii
ENSCVAG00000001536	oscp1a	90	65.812	ENSETEG00000005703	LSM10	97	65.812	Echinops_telfairi
ENSCVAG00000001536	oscp1a	84	48.214	ENSEBUG00000001312	oscp1a	92	48.214	Eptatretus_burgeri
ENSCVAG00000001536	oscp1a	90	65.546	ENSEASG00005012194	LSM10	97	65.546	Equus_asinus_asinus
ENSCVAG00000001536	oscp1a	90	65.546	ENSECAG00000005071	LSM10	97	65.546	Equus_caballus
ENSCVAG00000001536	oscp1a	90	66.387	ENSEEUG00000012032	LSM10	97	66.387	Erinaceus_europaeus
ENSCVAG00000001536	oscp1a	89	75.424	ENSELUG00000007452	oscp1a	97	75.424	Esox_lucius
ENSCVAG00000001536	oscp1a	87	63.478	ENSFALG00000000851	LSM10	93	63.478	Ficedula_albicollis
ENSCVAG00000001536	oscp1a	90	64.706	ENSFDAG00000021056	LSM10	97	64.706	Fukomys_damarensis
ENSCVAG00000001536	oscp1a	83	78.378	ENSFHEG00000001058	oscp1a	96	78.378	Fundulus_heteroclitus
ENSCVAG00000001536	oscp1a	88	67.241	ENSGMOG00000019832	oscp1a	97	67.241	Gadus_morhua
ENSCVAG00000001536	oscp1a	88	62.393	ENSGALG00000002127	LSM10	95	62.393	Gallus_gallus
ENSCVAG00000001536	oscp1a	79	69.524	ENSGAFG00000016445	oscp1a	85	69.524	Gambusia_affinis
ENSCVAG00000001536	oscp1a	89	80.508	ENSGACG00000002329	oscp1a	97	80.508	Gasterosteus_aculeatus
ENSCVAG00000001536	oscp1a	87	62.609	ENSGAGG00000024848	LSM10	93	62.609	Gopherus_agassizii
ENSCVAG00000001536	oscp1a	91	64.167	ENSGGOG00000003556	LSM10	98	64.167	Gorilla_gorilla
ENSCVAG00000001536	oscp1a	89	78.814	ENSHBUG00000001722	oscp1a	96	78.814	Haplochromis_burtoni
ENSCVAG00000001536	oscp1a	90	62.185	ENSHGLG00000011625	LSM10	97	62.185	Heterocephalus_glaber_female
ENSCVAG00000001536	oscp1a	90	62.185	ENSHGLG00100001769	LSM10	97	62.185	Heterocephalus_glaber_male
ENSCVAG00000001536	oscp1a	79	73.529	ENSIPUG00000005808	oscp1a	89	73.529	Ictalurus_punctatus
ENSCVAG00000001536	oscp1a	90	64.706	ENSSTOG00000000606	LSM10	97	64.706	Ictidomys_tridecemlineatus
ENSCVAG00000001536	oscp1a	89	81.356	ENSKMAG00000012143	oscp1a	98	81.356	Kryptolebias_marmoratus
ENSCVAG00000001536	oscp1a	84	77.477	ENSLBEG00000017764	oscp1a	91	77.477	Labrus_bergylta
ENSCVAG00000001536	oscp1a	91	59.504	ENSLACG00000015904	LSM10	93	59.504	Latimeria_chalumnae
ENSCVAG00000001536	oscp1a	90	68.908	ENSLOCG00000018277	oscp1a	98	68.908	Lepisosteus_oculatus
ENSCVAG00000001536	oscp1a	91	66.102	ENSLAFG00000009600	LSM10	98	66.102	Loxodonta_africana
ENSCVAG00000001536	oscp1a	91	63.333	ENSMFAG00000009115	LSM10	98	63.333	Macaca_fascicularis
ENSCVAG00000001536	oscp1a	91	63.333	ENSMMUG00000017338	LSM10	98	63.333	Macaca_mulatta
ENSCVAG00000001536	oscp1a	91	63.333	ENSMNEG00000020023	LSM10	98	63.333	Macaca_nemestrina
ENSCVAG00000001536	oscp1a	91	63.333	ENSMLEG00000025150	LSM10	98	63.333	Mandrillus_leucophaeus
ENSCVAG00000001536	oscp1a	91	80.000	ENSMAMG00000004427	oscp1a	98	80.000	Mastacembelus_armatus
ENSCVAG00000001536	oscp1a	89	77.966	ENSMZEG00005026307	oscp1a	96	77.966	Maylandia_zebra
ENSCVAG00000001536	oscp1a	88	61.538	ENSMGAG00000015707	LSM10	95	61.538	Meleagris_gallopavo
ENSCVAG00000001536	oscp1a	90	65.546	ENSMAUG00000016624	Lsm10	98	65.546	Mesocricetus_auratus
ENSCVAG00000001536	oscp1a	90	64.706	ENSMOCG00000021943	Lsm10	98	64.706	Microtus_ochrogaster
ENSCVAG00000001536	oscp1a	86	81.579	ENSMMOG00000013597	oscp1a	85	81.579	Mola_mola
ENSCVAG00000001536	oscp1a	89	66.102	ENSMODG00000023328	LSM10	96	66.102	Monodelphis_domestica
ENSCVAG00000001536	oscp1a	60	69.512	ENSMALG00000012661	oscp1a	65	69.512	Monopterus_albus
ENSCVAG00000001536	oscp1a	90	65.546	MGP_CAROLIEiJ_G0026467	Lsm10	99	69.565	Mus_caroli
ENSCVAG00000001536	oscp1a	90	65.546	ENSMUSG00000050188	Lsm10	99	69.565	Mus_musculus
ENSCVAG00000001536	oscp1a	90	65.546	MGP_PahariEiJ_G0028798	Lsm10	99	69.565	Mus_pahari
ENSCVAG00000001536	oscp1a	90	65.546	MGP_SPRETEiJ_G0027446	Lsm10	99	69.565	Mus_spretus
ENSCVAG00000001536	oscp1a	90	64.706	ENSMPUG00000018593	LSM10	97	64.706	Mustela_putorius_furo
ENSCVAG00000001536	oscp1a	90	63.866	ENSMLUG00000023895	LSM10	97	63.866	Myotis_lucifugus
ENSCVAG00000001536	oscp1a	90	63.866	ENSNGAG00000015011	Lsm10	97	63.866	Nannospalax_galili
ENSCVAG00000001536	oscp1a	89	79.661	ENSNBRG00000014306	oscp1a	96	79.661	Neolamprologus_brichardi
ENSCVAG00000001536	oscp1a	91	64.167	ENSNLEG00000033754	LSM10	98	64.167	Nomascus_leucogenys
ENSCVAG00000001536	oscp1a	89	66.102	ENSMEUG00000006313	LSM10	96	66.102	Notamacropus_eugenii
ENSCVAG00000001536	oscp1a	90	62.185	ENSOPRG00000001699	LSM10	97	62.185	Ochotona_princeps
ENSCVAG00000001536	oscp1a	90	63.866	ENSODEG00000019161	LSM10	97	63.866	Octodon_degus
ENSCVAG00000001536	oscp1a	89	79.661	ENSONIG00000020904	oscp1a	97	79.661	Oreochromis_niloticus
ENSCVAG00000001536	oscp1a	89	63.559	ENSOANG00000002066	LSM10	96	63.559	Ornithorhynchus_anatinus
ENSCVAG00000001536	oscp1a	90	63.866	ENSOCUG00000005333	LSM10	97	63.866	Oryctolagus_cuniculus
ENSCVAG00000001536	oscp1a	87	77.391	ENSORLG00000009504	oscp1a	95	77.391	Oryzias_latipes
ENSCVAG00000001536	oscp1a	87	77.391	ENSORLG00020016201	oscp1a	95	77.391	Oryzias_latipes_hni
ENSCVAG00000001536	oscp1a	87	77.876	ENSORLG00015007794	oscp1a	95	77.876	Oryzias_latipes_hsok
ENSCVAG00000001536	oscp1a	90	65.546	ENSOGAG00000002653	LSM10	97	65.546	Otolemur_garnettii
ENSCVAG00000001536	oscp1a	90	63.025	ENSOARG00000009596	LSM10	98	63.025	Ovis_aries
ENSCVAG00000001536	oscp1a	91	64.167	ENSPPAG00000023465	LSM10	98	64.167	Pan_paniscus
ENSCVAG00000001536	oscp1a	90	65.546	ENSPPRG00000014619	LSM10	97	65.546	Panthera_pardus
ENSCVAG00000001536	oscp1a	90	65.546	ENSPTIG00000004613	LSM10	97	65.546	Panthera_tigris_altaica
ENSCVAG00000001536	oscp1a	91	64.167	ENSPTRG00000000539	LSM10	98	64.167	Pan_troglodytes
ENSCVAG00000001536	oscp1a	91	63.333	ENSPANG00000023172	LSM10	98	63.333	Papio_anubis
ENSCVAG00000001536	oscp1a	89	69.492	ENSPKIG00000003728	oscp1a	95	69.492	Paramormyrops_kingsleyae
ENSCVAG00000001536	oscp1a	87	62.609	ENSPSIG00000000590	LSM10	93	62.609	Pelodiscus_sinensis
ENSCVAG00000001536	oscp1a	59	67.105	ENSPMGG00000015718	oscp1a	99	67.105	Periophthalmus_magnuspinnatus
ENSCVAG00000001536	oscp1a	78	70.297	ENSPCIG00000014865	LSM10	74	70.297	Phascolarctos_cinereus
ENSCVAG00000001536	oscp1a	88	72.414	ENSPFOG00000020490	oscp1a	98	72.414	Poecilia_formosa
ENSCVAG00000001536	oscp1a	96	68.504	ENSPLAG00000016537	oscp1a	97	68.504	Poecilia_latipinna
ENSCVAG00000001536	oscp1a	83	73.636	ENSPMEG00000000174	oscp1a	96	73.636	Poecilia_mexicana
ENSCVAG00000001536	oscp1a	96	70.079	ENSPREG00000009899	oscp1a	97	70.079	Poecilia_reticulata
ENSCVAG00000001536	oscp1a	91	64.167	ENSPPYG00000001539	LSM10	98	64.167	Pongo_abelii
ENSCVAG00000001536	oscp1a	89	66.379	ENSPCAG00000002520	LSM10	97	66.379	Procavia_capensis
ENSCVAG00000001536	oscp1a	90	64.706	ENSPVAG00000008644	LSM10	97	64.706	Pteropus_vampyrus
ENSCVAG00000001536	oscp1a	89	78.814	ENSPNYG00000003138	oscp1a	96	78.814	Pundamilia_nyererei
ENSCVAG00000001536	oscp1a	87	71.053	ENSPNAG00000028829	oscp1a	95	71.053	Pygocentrus_nattereri
ENSCVAG00000001536	oscp1a	90	64.706	ENSRNOG00000025716	Lsm10	98	64.706	Rattus_norvegicus
ENSCVAG00000001536	oscp1a	91	63.333	ENSRBIG00000001561	LSM10	98	63.333	Rhinopithecus_bieti
ENSCVAG00000001536	oscp1a	91	63.333	ENSRROG00000011414	LSM10	98	63.333	Rhinopithecus_roxellana
ENSCVAG00000001536	oscp1a	91	64.167	ENSSBOG00000036413	-	98	64.167	Saimiri_boliviensis_boliviensis
ENSCVAG00000001536	oscp1a	89	66.102	ENSSHAG00000018056	LSM10	96	66.102	Sarcophilus_harrisii
ENSCVAG00000001536	oscp1a	89	66.949	ENSSFOG00015019954	lsm10	98	66.387	Scleropages_formosus
ENSCVAG00000001536	oscp1a	87	80.000	ENSSMAG00000001297	oscp1a	98	80.000	Scophthalmus_maximus
ENSCVAG00000001536	oscp1a	88	77.586	ENSSDUG00000007090	oscp1a	94	77.586	Seriola_dumerili
ENSCVAG00000001536	oscp1a	88	78.448	ENSSLDG00000000800	oscp1a	96	78.448	Seriola_lalandi_dorsalis
ENSCVAG00000001536	oscp1a	82	68.868	ENSSARG00000004211	LSM10	97	64.463	Sorex_araneus
ENSCVAG00000001536	oscp1a	87	84.348	ENSSPAG00000009229	oscp1a	95	84.348	Stegastes_partitus
ENSCVAG00000001536	oscp1a	91	66.102	ENSSSCG00000038916	LSM10	98	66.102	Sus_scrofa
ENSCVAG00000001536	oscp1a	87	64.348	ENSTGUG00000001600	-	94	64.348	Taeniopygia_guttata
ENSCVAG00000001536	oscp1a	87	65.217	ENSTGUG00000001602	-	94	65.217	Taeniopygia_guttata
ENSCVAG00000001536	oscp1a	89	77.966	ENSTRUG00000010531	oscp1a	95	77.966	Takifugu_rubripes
ENSCVAG00000001536	oscp1a	91	63.333	ENSTBEG00000016674	LSM10	98	63.333	Tupaia_belangeri
ENSCVAG00000001536	oscp1a	90	64.706	ENSUAMG00000020265	LSM10	97	64.706	Ursus_americanus
ENSCVAG00000001536	oscp1a	90	64.706	ENSUMAG00000001438	LSM10	55	64.706	Ursus_maritimus
ENSCVAG00000001536	oscp1a	90	64.706	ENSVVUG00000023209	LSM10	97	64.706	Vulpes_vulpes
ENSCVAG00000001536	oscp1a	89	60.345	ENSXETG00000027631	lsm10	96	60.345	Xenopus_tropicalis
ENSCVAG00000001536	oscp1a	98	68.217	ENSXCOG00000018776	oscp1a	81	68.217	Xiphophorus_couchianus
ENSCVAG00000001536	oscp1a	83	73.636	ENSXMAG00000019963	oscp1a	88	73.636	Xiphophorus_maculatus