EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000001670 (Gene tree)
Gene ID: 107102643
Gene Symbol: sf1
Alias: wu:fc09f06|znf162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 22023 bases
Position: chrKL653787.1:85882-107904
Accession: 107102643
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000000723	KH_1	PF00013.29	3.1e-06	1	1
ENSCVAP00000020351	KH_1	PF00013.29	3.4e-06	1	1
ENSCVAP00000000723	zf-CCHC	PF00098.23	0.00032	1	1
ENSCVAP00000020351	zf-CCHC	PF00098.23	0.00052	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000014582	-	3458	XM_015402027	ENSCVAP00000020351	677 (aa)	XP_015257513	UPI000742BD21
ENSCVAT00000014587	-	1851	-	ENSCVAP00000000723	616 (aa)	-	-

Gene Model

Click here to download ENSCVAG00000001670's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000001670's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000001670	sf1	97	89.697	ENSAPOG00000012341	sf1	98	89.744	Acanthochromis_polyacanthus
ENSCVAG00000001670	sf1	63	78.973	ENSAMEG00000017828	SF1	58	84.324	Ailuropoda_melanoleuca
ENSCVAG00000001670	sf1	67	85.307	ENSACIG00000016514	sf1	66	85.307	Amphilophus_citrinellus
ENSCVAG00000001670	sf1	97	89.394	ENSAOCG00000010934	sf1	98	89.744	Amphiprion_ocellaris
ENSCVAG00000001670	sf1	97	89.394	ENSAPEG00000009498	sf1	98	89.744	Amphiprion_percula
ENSCVAG00000001670	sf1	67	89.474	ENSATEG00000001894	sf1	98	89.458	Anabas_testudineus
ENSCVAG00000001670	sf1	96	64.469	ENSANAG00000022607	-	88	76.099	Aotus_nancymaae
ENSCVAG00000001670	sf1	64	79.707	ENSANAG00000026664	-	89	84.324	Aotus_nancymaae
ENSCVAG00000001670	sf1	69	95.028	ENSACLG00000007633	sf1	68	94.751	Astatotilapia_calliptera
ENSCVAG00000001670	sf1	68	82.969	ENSAMXG00000003630	sf1	59	82.857	Astyanax_mexicanus
ENSCVAG00000001670	sf1	63	78.973	ENSBTAG00000001035	SF1	61	84.324	Bos_taurus
ENSCVAG00000001670	sf1	63	79.167	ENSCJAG00000002780	SF1	75	68.811	Callithrix_jacchus
ENSCVAG00000001670	sf1	63	78.973	ENSCAFG00000014239	SF1	58	84.324	Canis_familiaris
ENSCVAG00000001670	sf1	63	78.973	ENSCAFG00020014381	SF1	58	84.324	Canis_lupus_dingo
ENSCVAG00000001670	sf1	63	78.973	ENSCHIG00000025867	SF1	68	84.324	Capra_hircus
ENSCVAG00000001670	sf1	63	73.300	ENSTSYG00000033618	SF1	82	93.190	Carlito_syrichta
ENSCVAG00000001670	sf1	63	79.361	ENSCAPG00000010762	SF1	66	84.783	Cavia_aperea
ENSCVAG00000001670	sf1	63	79.361	ENSCPOG00000012290	SF1	69	84.783	Cavia_porcellus
ENSCVAG00000001670	sf1	63	80.846	ENSCCAG00000037881	SF1	89	84.324	Cebus_capucinus
ENSCVAG00000001670	sf1	63	72.139	ENSCCAG00000023781	-	82	74.595	Cebus_capucinus
ENSCVAG00000001670	sf1	63	78.973	ENSCATG00000011564	SF1	89	84.324	Cercocebus_atys
ENSCVAG00000001670	sf1	63	78.973	ENSCSAG00000007258	SF1	68	84.324	Chlorocebus_sabaeus
ENSCVAG00000001670	sf1	60	74.036	ENSCHOG00000006008	SF1	66	79.143	Choloepus_hoffmanni
ENSCVAG00000001670	sf1	66	83.133	ENSCPBG00000023763	SF1	53	78.199	Chrysemys_picta_bellii
ENSCVAG00000001670	sf1	50	67.197	ENSCING00000005564	-	92	54.604	Ciona_intestinalis
ENSCVAG00000001670	sf1	72	55.411	ENSCSAVG00000009055	-	72	62.829	Ciona_savignyi
ENSCVAG00000001670	sf1	63	78.973	ENSCANG00000042201	SF1	89	84.324	Colobus_angolensis_palliatus
ENSCVAG00000001670	sf1	64	78.537	ENSCGRG00001003677	Sf1	65	84.865	Cricetulus_griseus_chok1gshd
ENSCVAG00000001670	sf1	63	79.115	ENSCGRG00000001708	Sf1	68	85.326	Cricetulus_griseus_crigri
ENSCVAG00000001670	sf1	97	87.179	ENSCSEG00000014375	sf1	94	87.500	Cynoglossus_semilaevis
ENSCVAG00000001670	sf1	81	90.789	ENSDARG00000008188	sf1	65	92.329	Danio_rerio
ENSCVAG00000001670	sf1	63	78.729	ENSDNOG00000001282	SF1	68	84.324	Dasypus_novemcinctus
ENSCVAG00000001670	sf1	63	79.167	ENSDORG00000016334	Sf1	58	84.324	Dipodomys_ordii
ENSCVAG00000001670	sf1	63	73.710	ENSETEG00000012830	SF1	51	77.174	Echinops_telfairi
ENSCVAG00000001670	sf1	99	49.112	ENSEBUG00000012728	sf1	51	63.032	Eptatretus_burgeri
ENSCVAG00000001670	sf1	63	78.973	ENSEASG00005018272	SF1	68	84.324	Equus_asinus_asinus
ENSCVAG00000001670	sf1	63	79.218	ENSECAG00000024544	SF1	68	84.595	Equus_caballus
ENSCVAG00000001670	sf1	56	80.000	ENSEEUG00000001058	SF1	83	85.846	Erinaceus_europaeus
ENSCVAG00000001670	sf1	77	77.365	ENSELUG00000013225	sf1	60	84.165	Esox_lucius
ENSCVAG00000001670	sf1	63	79.167	ENSFCAG00000012231	SF1	75	69.020	Felis_catus
ENSCVAG00000001670	sf1	63	79.361	ENSFDAG00000009833	SF1	66	84.783	Fukomys_damarensis
ENSCVAG00000001670	sf1	97	92.716	ENSFHEG00000022656	sf1	98	90.483	Fundulus_heteroclitus
ENSCVAG00000001670	sf1	83	96.552	ENSGMOG00000007469	sf1	68	96.875	Gadus_morhua
ENSCVAG00000001670	sf1	89	93.554	ENSGAFG00000019284	sf1	98	93.554	Gambusia_affinis
ENSCVAG00000001670	sf1	66	82.892	ENSGAGG00000021691	SF1	68	71.400	Gopherus_agassizii
ENSCVAG00000001670	sf1	67	91.648	ENSHBUG00000011598	sf1	98	90.390	Haplochromis_burtoni
ENSCVAG00000001670	sf1	63	78.973	ENSHGLG00000009541	SF1	65	84.324	Heterocephalus_glaber_female
ENSCVAG00000001670	sf1	63	79.361	ENSHGLG00100013879	-	66	84.783	Heterocephalus_glaber_male
ENSCVAG00000001670	sf1	59	77.297	ENSHGLG00100008076	-	66	84.127	Heterocephalus_glaber_male
ENSCVAG00000001670	sf1	64	68.545	ENSHGLG00100008255	-	72	75.946	Heterocephalus_glaber_male
ENSCVAG00000001670	sf1	69	84.894	ENSHCOG00000011388	sf1	98	85.370	Hippocampus_comes
ENSCVAG00000001670	sf1	63	79.361	ENSSTOG00000009790	-	59	84.783	Ictidomys_tridecemlineatus
ENSCVAG00000001670	sf1	67	70.047	ENSSTOG00000024353	-	68	72.539	Ictidomys_tridecemlineatus
ENSCVAG00000001670	sf1	63	79.218	ENSJJAG00000011788	Sf1	58	84.595	Jaculus_jaculus
ENSCVAG00000001670	sf1	68	91.285	ENSKMAG00000005854	sf1	87	91.053	Kryptolebias_marmoratus
ENSCVAG00000001670	sf1	80	91.489	ENSLBEG00000019836	sf1	72	87.609	Labrus_bergylta
ENSCVAG00000001670	sf1	64	79.012	ENSLACG00000018493	SF1	67	81.941	Latimeria_chalumnae
ENSCVAG00000001670	sf1	59	88.859	ENSLOCG00000002130	sf1	72	80.000	Lepisosteus_oculatus
ENSCVAG00000001670	sf1	63	79.518	ENSLAFG00000007201	SF1	63	84.043	Loxodonta_africana
ENSCVAG00000001670	sf1	63	78.973	ENSMFAG00000033122	SF1	89	84.324	Macaca_fascicularis
ENSCVAG00000001670	sf1	63	79.167	ENSMMUG00000022606	SF1	90	84.324	Macaca_mulatta
ENSCVAG00000001670	sf1	63	79.167	ENSMNEG00000037901	SF1	89	84.324	Macaca_nemestrina
ENSCVAG00000001670	sf1	63	79.412	ENSMLEG00000040706	SF1	89	84.824	Mandrillus_leucophaeus
ENSCVAG00000001670	sf1	67	91.447	ENSMAMG00000001780	sf1	98	90.663	Mastacembelus_armatus
ENSCVAG00000001670	sf1	67	91.648	ENSMZEG00005009196	sf1	98	90.390	Maylandia_zebra
ENSCVAG00000001670	sf1	63	78.729	ENSMAUG00000014064	Sf1	65	84.865	Mesocricetus_auratus
ENSCVAG00000001670	sf1	64	78.484	ENSMICG00000001202	SF1	89	84.097	Microcebus_murinus
ENSCVAG00000001670	sf1	63	79.756	ENSMOCG00000022038	Sf1	65	85.135	Microtus_ochrogaster
ENSCVAG00000001670	sf1	67	87.500	ENSMMOG00000020474	sf1	66	87.500	Mola_mola
ENSCVAG00000001670	sf1	64	78.832	ENSMODG00000029407	SF1	81	84.367	Monodelphis_domestica
ENSCVAG00000001670	sf1	67	84.868	ENSMALG00000020521	sf1	72	84.868	Monopterus_albus
ENSCVAG00000001670	sf1	63	78.729	MGP_CAROLIEiJ_G0022607	Sf1	99	95.113	Mus_caroli
ENSCVAG00000001670	sf1	63	78.729	ENSMUSG00000024949	Sf1	99	95.113	Mus_musculus
ENSCVAG00000001670	sf1	63	78.729	MGP_PahariEiJ_G0014101	Sf1	99	95.113	Mus_pahari
ENSCVAG00000001670	sf1	63	78.729	MGP_SPRETEiJ_G0023518	Sf1	99	95.113	Mus_spretus
ENSCVAG00000001670	sf1	63	78.973	ENSMPUG00000012684	SF1	58	84.324	Mustela_putorius_furo
ENSCVAG00000001670	sf1	63	78.729	ENSMLUG00000015217	-	58	84.324	Myotis_lucifugus
ENSCVAG00000001670	sf1	67	75.231	ENSMLUG00000029800	-	64	80.541	Myotis_lucifugus
ENSCVAG00000001670	sf1	63	79.218	ENSNGAG00000005550	Sf1	65	84.595	Nannospalax_galili
ENSCVAG00000001670	sf1	77	91.304	ENSNBRG00000017606	sf1	67	94.751	Neolamprologus_brichardi
ENSCVAG00000001670	sf1	63	78.973	ENSNLEG00000005236	-	89	84.324	Nomascus_leucogenys
ENSCVAG00000001670	sf1	62	77.859	ENSMEUG00000013424	SF1	68	85.359	Notamacropus_eugenii
ENSCVAG00000001670	sf1	56	79.396	ENSOPRG00000005008	SF1	66	85.538	Ochotona_princeps
ENSCVAG00000001670	sf1	63	76.528	ENSODEG00000006102	-	59	81.622	Octodon_degus
ENSCVAG00000001670	sf1	67	91.429	ENSONIG00000015728	sf1	98	90.240	Oreochromis_niloticus
ENSCVAG00000001670	sf1	52	76.176	ENSOANG00000002909	SF1	76	79.208	Ornithorhynchus_anatinus
ENSCVAG00000001670	sf1	63	78.973	ENSOCUG00000026486	SF1	59	84.324	Oryctolagus_cuniculus
ENSCVAG00000001670	sf1	69	88.060	ENSORLG00000011853	sf1	66	89.648	Oryzias_latipes
ENSCVAG00000001670	sf1	69	88.486	ENSORLG00020011834	sf1	66	90.088	Oryzias_latipes_hni
ENSCVAG00000001670	sf1	68	88.621	ENSORLG00015012855	sf1	66	89.207	Oryzias_latipes_hsok
ENSCVAG00000001670	sf1	68	90.153	ENSOMEG00000005210	sf1	98	89.124	Oryzias_melastigma
ENSCVAG00000001670	sf1	63	78.973	ENSOGAG00000016196	SF1	58	84.324	Otolemur_garnettii
ENSCVAG00000001670	sf1	63	78.973	ENSOARG00000009166	SF1	65	84.324	Ovis_aries
ENSCVAG00000001670	sf1	63	80.392	ENSPPAG00000002799	-	90	84.324	Pan_paniscus
ENSCVAG00000001670	sf1	63	79.361	ENSPPRG00000013566	SF1	57	86.080	Panthera_pardus
ENSCVAG00000001670	sf1	63	78.973	ENSPTIG00000016141	SF1	67	84.324	Panthera_tigris_altaica
ENSCVAG00000001670	sf1	65	79.137	ENSPTRG00000003846	SF1	89	84.324	Pan_troglodytes
ENSCVAG00000001670	sf1	63	78.973	ENSPANG00000020754	SF1	89	84.324	Papio_anubis
ENSCVAG00000001670	sf1	51	80.967	ENSPKIG00000012116	sf1	79	80.707	Paramormyrops_kingsleyae
ENSCVAG00000001670	sf1	63	78.922	ENSPEMG00000010463	Sf1	65	84.865	Peromyscus_maniculatus_bairdii
ENSCVAG00000001670	sf1	63	79.167	ENSPCIG00000018173	SF1	60	84.595	Phascolarctos_cinereus
ENSCVAG00000001670	sf1	97	94.073	ENSPFOG00000013683	sf1	98	95.008	Poecilia_formosa
ENSCVAG00000001670	sf1	97	89.901	ENSPLAG00000018076	sf1	94	94.797	Poecilia_latipinna
ENSCVAG00000001670	sf1	97	93.921	ENSPMEG00000005726	sf1	98	94.856	Poecilia_mexicana
ENSCVAG00000001670	sf1	97	94.073	ENSPREG00000004155	sf1	98	94.100	Poecilia_reticulata
ENSCVAG00000001670	sf1	63	78.973	ENSPPYG00000003098	-	70	84.324	Pongo_abelii
ENSCVAG00000001670	sf1	63	78.922	ENSPCAG00000013631	SF1	75	68.297	Procavia_capensis
ENSCVAG00000001670	sf1	64	78.484	ENSPCOG00000027546	SF1	89	84.097	Propithecus_coquereli
ENSCVAG00000001670	sf1	63	78.922	ENSPVAG00000016938	SF1	75	70.495	Pteropus_vampyrus
ENSCVAG00000001670	sf1	67	91.429	ENSPNYG00000004673	sf1	98	90.240	Pundamilia_nyererei
ENSCVAG00000001670	sf1	68	81.917	ENSPNAG00000013072	sf1	67	82.159	Pygocentrus_nattereri
ENSCVAG00000001670	sf1	63	78.729	ENSRNOG00000021085	Sf1	60	85.382	Rattus_norvegicus
ENSCVAG00000001670	sf1	63	79.703	ENSRBIG00000042818	SF1	89	84.324	Rhinopithecus_bieti
ENSCVAG00000001670	sf1	78	69.515	ENSRROG00000045655	SF1	89	84.824	Rhinopithecus_roxellana
ENSCVAG00000001670	sf1	54	39.542	YLR116W	MSL5	66	41.071	Saccharomyces_cerevisiae
ENSCVAG00000001670	sf1	97	60.987	ENSSBOG00000022267	-	88	70.350	Saimiri_boliviensis_boliviensis
ENSCVAG00000001670	sf1	75	71.026	ENSSHAG00000006841	SF1	70	83.727	Sarcophilus_harrisii
ENSCVAG00000001670	sf1	70	79.794	ENSSFOG00015021978	sf1	66	81.441	Scleropages_formosus
ENSCVAG00000001670	sf1	84	85.198	ENSSMAG00000007549	sf1	70	88.210	Scophthalmus_maximus
ENSCVAG00000001670	sf1	67	90.810	ENSSDUG00000003903	sf1	98	90.016	Seriola_dumerili
ENSCVAG00000001670	sf1	63	75.184	ENSSARG00000008180	SF1	71	80.163	Sorex_araneus
ENSCVAG00000001670	sf1	63	80.000	ENSSPUG00000012907	SF1	58	89.565	Sphenodon_punctatus
ENSCVAG00000001670	sf1	97	89.394	ENSSPAG00000019060	sf1	98	89.744	Stegastes_partitus
ENSCVAG00000001670	sf1	63	78.729	ENSSSCG00000013021	SF1	68	84.324	Sus_scrofa
ENSCVAG00000001670	sf1	78	72.179	ENSTNIG00000004820	sf1	72	79.211	Tetraodon_nigroviridis
ENSCVAG00000001670	sf1	63	73.219	ENSTBEG00000013133	SF1	54	77.717	Tupaia_belangeri
ENSCVAG00000001670	sf1	63	74.201	ENSTTRG00000008857	SF1	68	79.891	Tursiops_truncatus
ENSCVAG00000001670	sf1	63	81.638	ENSUMAG00000007268	SF1	71	84.324	Ursus_maritimus
ENSCVAG00000001670	sf1	63	78.973	ENSVVUG00000028585	SF1	68	84.324	Vulpes_vulpes
ENSCVAG00000001670	sf1	96	69.091	ENSXETG00000008434	sf1	62	87.006	Xenopus_tropicalis
ENSCVAG00000001670	sf1	77	93.996	ENSXCOG00000003704	sf1	72	97.568	Xiphophorus_couchianus
ENSCVAG00000001670	sf1	97	94.377	ENSXMAG00000007822	sf1	98	94.402	Xiphophorus_maculatus