EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000002595 (Gene tree)
Gene ID: 107095786
Gene Symbol: chd1l
Alias: zgc:56084
Full Name: chromodomain helicase DNA binding protein 1 like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 21560 bases
Position: chrKL653072.1:95973-117532
Accession: 107095786
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000020886	ResIII	PF04851.15	6.1e-11	1	1
ENSCVAP00000020892	ResIII	PF04851.15	7.6e-11	1	1
ENSCVAP00000001590	ResIII	PF04851.15	1.9e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000013175	-	2862	-	ENSCVAP00000001590	953 (aa)	-	-
ENSCVAT00000013185	-	3164	-	ENSCVAP00000020892	1020 (aa)	-	-
ENSCVAT00000013197	-	3047	XM_015392080	ENSCVAP00000020886	981 (aa)	XP_015247566	-

Gene Model

Click here to download ENSCVAG00000002595's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000002595's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000002595	chd1l	57	41.348	ENSCVAG00000008668	smarca5	66	39.478

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000002595	chd1l	89	62.734	ENSG00000131778	CHD1L	99	63.269	Homo_sapiens
ENSCVAG00000002595	chd1l	94	82.557	ENSAPOG00000001539	chd1l	99	83.986	Acanthochromis_polyacanthus
ENSCVAG00000002595	chd1l	91	62.700	ENSAMEG00000017063	CHD1L	95	64.195	Ailuropoda_melanoleuca
ENSCVAG00000002595	chd1l	89	81.053	ENSACIG00000001164	chd1l	100	80.091	Amphilophus_citrinellus
ENSCVAG00000002595	chd1l	97	82.353	ENSAOCG00000014510	chd1l	93	82.143	Amphiprion_ocellaris
ENSCVAG00000002595	chd1l	91	80.575	ENSAPEG00000017573	chd1l	95	81.452	Amphiprion_percula
ENSCVAG00000002595	chd1l	91	80.507	ENSAPEG00000017450	chd1l	99	78.501	Amphiprion_percula
ENSCVAG00000002595	chd1l	97	79.707	ENSATEG00000013058	chd1l	94	80.866	Anabas_testudineus
ENSCVAG00000002595	chd1l	88	61.538	ENSAPLG00000009976	CHD1L	96	61.982	Anas_platyrhynchos
ENSCVAG00000002595	chd1l	91	59.598	ENSACAG00000017686	CHD1L	100	59.348	Anolis_carolinensis
ENSCVAG00000002595	chd1l	89	63.263	ENSANAG00000024347	CHD1L	97	62.528	Aotus_nancymaae
ENSCVAG00000002595	chd1l	98	79.691	ENSACLG00000019304	chd1l	98	78.603	Astatotilapia_calliptera
ENSCVAG00000002595	chd1l	98	60.829	ENSAMXG00000012367	chd1l	95	60.766	Astyanax_mexicanus
ENSCVAG00000002595	chd1l	91	62.243	ENSBTAG00000020831	CHD1L	95	63.298	Bos_taurus
ENSCVAG00000002595	chd1l	90	62.747	ENSCJAG00000002406	CHD1L	97	62.799	Callithrix_jacchus
ENSCVAG00000002595	chd1l	91	60.183	ENSCAFG00000010944	CHD1L	96	61.239	Canis_familiaris
ENSCVAG00000002595	chd1l	91	62.243	ENSCAFG00020020121	CHD1L	97	63.303	Canis_lupus_dingo
ENSCVAG00000002595	chd1l	91	61.785	ENSCHIG00000013871	CHD1L	97	61.353	Capra_hircus
ENSCVAG00000002595	chd1l	87	63.051	ENSTSYG00000003005	CHD1L	98	63.938	Carlito_syrichta
ENSCVAG00000002595	chd1l	90	61.377	ENSCPOG00000009000	CHD1L	97	60.865	Cavia_porcellus
ENSCVAG00000002595	chd1l	90	61.118	ENSCCAG00000036079	CHD1L	97	61.206	Cebus_capucinus
ENSCVAG00000002595	chd1l	90	63.054	ENSCATG00000031044	CHD1L	97	62.870	Cercocebus_atys
ENSCVAG00000002595	chd1l	91	61.364	ENSCLAG00000000880	CHD1L	97	62.984	Chinchilla_lanigera
ENSCVAG00000002595	chd1l	90	63.097	ENSCSAG00000018386	CHD1L	95	63.963	Chlorocebus_sabaeus
ENSCVAG00000002595	chd1l	91	63.188	ENSCPBG00000002600	CHD1L	100	64.191	Chrysemys_picta_bellii
ENSCVAG00000002595	chd1l	90	63.054	ENSCANG00000020239	CHD1L	95	63.054	Colobus_angolensis_palliatus
ENSCVAG00000002595	chd1l	90	63.341	ENSCGRG00001021624	Chd1l	98	62.950	Cricetulus_griseus_chok1gshd
ENSCVAG00000002595	chd1l	87	63.604	ENSCGRG00000007554	Chd1l	100	63.194	Cricetulus_griseus_crigri
ENSCVAG00000002595	chd1l	97	67.318	ENSDARG00000015471	chd1l	94	68.744	Danio_rerio
ENSCVAG00000002595	chd1l	91	62.700	ENSDNOG00000019504	CHD1L	97	63.194	Dasypus_novemcinctus
ENSCVAG00000002595	chd1l	90	61.268	ENSDORG00000013555	Chd1l	98	61.382	Dipodomys_ordii
ENSCVAG00000002595	chd1l	82	61.191	ENSETEG00000008445	CHD1L	87	62.186	Echinops_telfairi
ENSCVAG00000002595	chd1l	63	78.261	ENSEBUG00000005791	chd1l	79	78.261	Eptatretus_burgeri
ENSCVAG00000002595	chd1l	90	62.864	ENSEASG00005007364	CHD1L	98	64.251	Equus_asinus_asinus
ENSCVAG00000002595	chd1l	90	62.864	ENSECAG00000008915	CHD1L	98	64.251	Equus_caballus
ENSCVAG00000002595	chd1l	97	58.197	ENSELUG00000016844	chd1l	93	58.299	Esox_lucius
ENSCVAG00000002595	chd1l	91	62.057	ENSFCAG00000007777	CHD1L	97	62.330	Felis_catus
ENSCVAG00000002595	chd1l	89	61.460	ENSFALG00000006087	CHD1L	96	61.574	Ficedula_albicollis
ENSCVAG00000002595	chd1l	88	62.768	ENSFDAG00000012431	CHD1L	99	62.980	Fukomys_damarensis
ENSCVAG00000002595	chd1l	97	84.874	ENSFHEG00000012420	chd1l	94	85.189	Fundulus_heteroclitus
ENSCVAG00000002595	chd1l	89	61.644	ENSGALG00000015038	CHD1L	96	61.574	Gallus_gallus
ENSCVAG00000002595	chd1l	97	85.371	ENSGAFG00000018198	chd1l	99	81.171	Gambusia_affinis
ENSCVAG00000002595	chd1l	54	81.250	ENSGACG00000014042	chd1l	98	82.617	Gasterosteus_aculeatus
ENSCVAG00000002595	chd1l	91	63.501	ENSGAGG00000014432	CHD1L	99	63.688	Gopherus_agassizii
ENSCVAG00000002595	chd1l	90	62.326	ENSGGOG00000001067	CHD1L	97	62.372	Gorilla_gorilla
ENSCVAG00000002595	chd1l	98	79.588	ENSHBUG00000007464	chd1l	98	80.527	Haplochromis_burtoni
ENSCVAG00000002595	chd1l	90	61.260	ENSHGLG00000008933	CHD1L	97	61.231	Heterocephalus_glaber_female
ENSCVAG00000002595	chd1l	87	61.151	ENSHGLG00100007155	CHD1L	99	60.256	Heterocephalus_glaber_male
ENSCVAG00000002595	chd1l	91	72.738	ENSHCOG00000012787	chd1l	94	72.738	Hippocampus_comes
ENSCVAG00000002595	chd1l	97	65.041	ENSIPUG00000022617	chd1l	94	65.217	Ictalurus_punctatus
ENSCVAG00000002595	chd1l	91	58.324	ENSSTOG00000007032	CHD1L	97	58.324	Ictidomys_tridecemlineatus
ENSCVAG00000002595	chd1l	97	81.217	ENSKMAG00000014358	chd1l	93	81.427	Kryptolebias_marmoratus
ENSCVAG00000002595	chd1l	97	78.609	ENSLBEG00000023845	chd1l	97	80.529	Labrus_bergylta
ENSCVAG00000002595	chd1l	95	58.105	ENSLACG00000006262	CHD1L	91	58.755	Latimeria_chalumnae
ENSCVAG00000002595	chd1l	97	67.921	ENSLOCG00000010574	chd1l	93	68.234	Lepisosteus_oculatus
ENSCVAG00000002595	chd1l	89	63.066	ENSLAFG00000018136	CHD1L	100	63.218	Loxodonta_africana
ENSCVAG00000002595	chd1l	88	63.615	ENSMFAG00000043562	CHD1L	99	63.329	Macaca_fascicularis
ENSCVAG00000002595	chd1l	90	63.170	ENSMMUG00000009024	CHD1L	97	62.984	Macaca_mulatta
ENSCVAG00000002595	chd1l	90	63.170	ENSMNEG00000039905	CHD1L	97	62.984	Macaca_nemestrina
ENSCVAG00000002595	chd1l	90	63.170	ENSMLEG00000030900	CHD1L	97	62.984	Mandrillus_leucophaeus
ENSCVAG00000002595	chd1l	97	79.728	ENSMAMG00000012822	chd1l	99	80.253	Mastacembelus_armatus
ENSCVAG00000002595	chd1l	98	79.794	ENSMZEG00005020830	chd1l	97	79.485	Maylandia_zebra
ENSCVAG00000002595	chd1l	88	62.457	ENSMGAG00000014304	CHD1L	99	62.457	Meleagris_gallopavo
ENSCVAG00000002595	chd1l	90	63.869	ENSMICG00000002497	CHD1L	95	64.617	Microcebus_murinus
ENSCVAG00000002595	chd1l	91	63.574	ENSMOCG00000006305	Chd1l	98	63.873	Microtus_ochrogaster
ENSCVAG00000002595	chd1l	91	72.976	ENSMMOG00000005964	chd1l	91	73.455	Mola_mola
ENSCVAG00000002595	chd1l	91	61.327	ENSMODG00000018717	CHD1L	99	61.290	Monodelphis_domestica
ENSCVAG00000002595	chd1l	97	80.672	ENSMALG00000014675	chd1l	93	80.672	Monopterus_albus
ENSCVAG00000002595	chd1l	90	64.103	MGP_CAROLIEiJ_G0025401	Chd1l	98	64.123	Mus_caroli
ENSCVAG00000002595	chd1l	90	63.837	ENSMUSG00000028089	Chd1l	98	63.936	Mus_musculus
ENSCVAG00000002595	chd1l	90	64.253	MGP_PahariEiJ_G0026845	Chd1l	98	64.253	Mus_pahari
ENSCVAG00000002595	chd1l	90	63.721	MGP_SPRETEiJ_G0026347	Chd1l	98	63.719	Mus_spretus
ENSCVAG00000002595	chd1l	91	62.658	ENSMPUG00000000615	CHD1L	99	62.277	Mustela_putorius_furo
ENSCVAG00000002595	chd1l	89	62.821	ENSMLUG00000007573	CHD1L	97	62.108	Myotis_lucifugus
ENSCVAG00000002595	chd1l	88	61.091	ENSNGAG00000000908	Chd1l	98	60.759	Nannospalax_galili
ENSCVAG00000002595	chd1l	91	77.714	ENSNBRG00000006021	chd1l	95	78.833	Neolamprologus_brichardi
ENSCVAG00000002595	chd1l	90	62.005	ENSNLEG00000000179	CHD1L	95	63.140	Nomascus_leucogenys
ENSCVAG00000002595	chd1l	88	53.516	ENSOPRG00000006973	CHD1L	98	54.858	Ochotona_princeps
ENSCVAG00000002595	chd1l	91	58.257	ENSODEG00000002494	CHD1L	97	58.884	Octodon_degus
ENSCVAG00000002595	chd1l	98	80.561	ENSONIG00000003183	chd1l	97	80.582	Oreochromis_niloticus
ENSCVAG00000002595	chd1l	80	58.951	ENSOANG00000003068	CHD1L	92	60.360	Ornithorhynchus_anatinus
ENSCVAG00000002595	chd1l	90	60.069	ENSOCUG00000009336	CHD1L	95	60.939	Oryctolagus_cuniculus
ENSCVAG00000002595	chd1l	91	77.100	ENSORLG00000003673	chd1l	97	75.808	Oryzias_latipes
ENSCVAG00000002595	chd1l	97	76.250	ENSORLG00020005123	chd1l	99	76.286	Oryzias_latipes_hni
ENSCVAG00000002595	chd1l	97	76.046	ENSORLG00015001680	chd1l	99	76.958	Oryzias_latipes_hsok
ENSCVAG00000002595	chd1l	79	74.675	ENSOMEG00000006109	chd1l	90	74.675	Oryzias_melastigma
ENSCVAG00000002595	chd1l	91	62.156	ENSOGAG00000008775	CHD1L	95	63.763	Otolemur_garnettii
ENSCVAG00000002595	chd1l	91	62.014	ENSOARG00000020547	CHD1L	97	63.658	Ovis_aries
ENSCVAG00000002595	chd1l	90	62.704	ENSPPAG00000039193	CHD1L	100	62.754	Pan_paniscus
ENSCVAG00000002595	chd1l	89	63.263	ENSPPRG00000010258	CHD1L	97	62.443	Panthera_pardus
ENSCVAG00000002595	chd1l	90	62.587	ENSPTRG00000001220	CHD1L	97	62.429	Pan_troglodytes
ENSCVAG00000002595	chd1l	90	62.980	ENSPANG00000009170	CHD1L	97	62.984	Papio_anubis
ENSCVAG00000002595	chd1l	97	68.311	ENSPKIG00000022166	chd1l	97	69.832	Paramormyrops_kingsleyae
ENSCVAG00000002595	chd1l	91	62.959	ENSPSIG00000012595	CHD1L	99	62.542	Pelodiscus_sinensis
ENSCVAG00000002595	chd1l	91	62.329	ENSPEMG00000013528	Chd1l	98	62.599	Peromyscus_maniculatus_bairdii
ENSCVAG00000002595	chd1l	84	62.299	ENSPCIG00000030409	CHD1L	99	62.485	Phascolarctos_cinereus
ENSCVAG00000002595	chd1l	97	84.728	ENSPFOG00000015948	chd1l	94	84.833	Poecilia_formosa
ENSCVAG00000002595	chd1l	97	85.386	ENSPLAG00000015145	chd1l	97	85.011	Poecilia_latipinna
ENSCVAG00000002595	chd1l	97	84.728	ENSPMEG00000008720	chd1l	99	84.728	Poecilia_mexicana
ENSCVAG00000002595	chd1l	91	84.120	ENSPREG00000017885	chd1l	98	84.289	Poecilia_reticulata
ENSCVAG00000002595	chd1l	90	62.747	ENSPPYG00000000946	CHD1L	97	62.698	Pongo_abelii
ENSCVAG00000002595	chd1l	85	57.038	ENSPCAG00000005959	CHD1L	90	57.387	Procavia_capensis
ENSCVAG00000002595	chd1l	88	59.618	ENSPVAG00000006084	CHD1L	99	60.166	Pteropus_vampyrus
ENSCVAG00000002595	chd1l	91	80.046	ENSPNYG00000013001	chd1l	97	80.641	Pundamilia_nyererei
ENSCVAG00000002595	chd1l	97	67.942	ENSPNAG00000011881	chd1l	94	68.252	Pygocentrus_nattereri
ENSCVAG00000002595	chd1l	91	63.284	ENSRNOG00000017669	Chd1l	98	63.892	Rattus_norvegicus
ENSCVAG00000002595	chd1l	90	63.054	ENSRBIG00000041272	CHD1L	95	63.054	Rhinopithecus_bieti
ENSCVAG00000002595	chd1l	90	63.213	ENSRROG00000041354	CHD1L	96	62.920	Rhinopithecus_roxellana
ENSCVAG00000002595	chd1l	91	60.850	ENSSHAG00000017395	CHD1L	99	61.204	Sarcophilus_harrisii
ENSCVAG00000002595	chd1l	97	67.469	ENSSFOG00015003649	chd1l	99	68.109	Scleropages_formosus
ENSCVAG00000002595	chd1l	97	76.269	ENSSMAG00000019377	chd1l	97	77.257	Scophthalmus_maximus
ENSCVAG00000002595	chd1l	89	81.390	ENSSDUG00000019831	chd1l	95	81.272	Seriola_dumerili
ENSCVAG00000002595	chd1l	89	81.904	ENSSLDG00000012714	chd1l	95	81.434	Seriola_lalandi_dorsalis
ENSCVAG00000002595	chd1l	91	60.714	ENSSPUG00000016865	CHD1L	99	61.564	Sphenodon_punctatus
ENSCVAG00000002595	chd1l	97	82.075	ENSSPAG00000017653	chd1l	100	82.075	Stegastes_partitus
ENSCVAG00000002595	chd1l	90	61.072	ENSSSCG00000006701	CHD1L	98	60.860	Sus_scrofa
ENSCVAG00000002595	chd1l	89	62.057	ENSTGUG00000013392	-	99	62.171	Taeniopygia_guttata
ENSCVAG00000002595	chd1l	89	67.251	ENSTNIG00000004902	chd1l	99	67.836	Tetraodon_nigroviridis
ENSCVAG00000002595	chd1l	88	61.144	ENSTTRG00000011711	CHD1L	99	60.864	Tursiops_truncatus
ENSCVAG00000002595	chd1l	91	62.471	ENSUAMG00000021991	CHD1L	98	63.379	Ursus_americanus
ENSCVAG00000002595	chd1l	91	62.372	ENSUMAG00000009733	CHD1L	97	63.529	Ursus_maritimus
ENSCVAG00000002595	chd1l	96	59.761	ENSVVUG00000007316	CHD1L	96	62.400	Vulpes_vulpes
ENSCVAG00000002595	chd1l	97	81.981	ENSXCOG00000008336	chd1l	93	81.981	Xiphophorus_couchianus
ENSCVAG00000002595	chd1l	97	85.639	ENSXMAG00000015898	chd1l	94	85.639	Xiphophorus_maculatus