EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000002645 (Gene tree)
Gene ID: 107084910
Gene Symbol: rnpc3
Alias: caliban|clbn|zgc:136847
Full Name: RNA binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 23570 bases
Position: chrKL652611.1:987444-1011013
Accession: 107084910
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000001637	RRM_1	PF00076.22	2.9e-15	1	2
ENSCVAP00000001637	RRM_1	PF00076.22	2.9e-15	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000013076	-	2120	XM_015374970	ENSCVAP00000001637	512 (aa)	XP_015230456	-

Gene Model

Click here to download ENSCVAG00000002645's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000002645's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000002645	rnpc3	96	54.781	ENSG00000185946	RNPC3	96	56.391	Homo_sapiens
ENSCVAG00000002645	rnpc3	100	81.712	ENSAPOG00000017371	rnpc3	100	81.712	Acanthochromis_polyacanthus
ENSCVAG00000002645	rnpc3	97	54.743	ENSAMEG00000001694	RNPC3	94	54.420	Ailuropoda_melanoleuca
ENSCVAG00000002645	rnpc3	99	77.210	ENSACIG00000021043	rnpc3	99	77.210	Amphilophus_citrinellus
ENSCVAG00000002645	rnpc3	100	83.074	ENSAOCG00000014052	rnpc3	98	83.074	Amphiprion_ocellaris
ENSCVAG00000002645	rnpc3	100	82.685	ENSAPEG00000008739	rnpc3	98	82.685	Amphiprion_percula
ENSCVAG00000002645	rnpc3	100	79.497	ENSATEG00000021263	rnpc3	100	79.497	Anabas_testudineus
ENSCVAG00000002645	rnpc3	89	53.448	ENSAPLG00000015605	RNPC3	99	53.233	Anas_platyrhynchos
ENSCVAG00000002645	rnpc3	96	55.263	ENSACAG00000002029	RNPC3	96	54.851	Anolis_carolinensis
ENSCVAG00000002645	rnpc3	96	54.871	ENSANAG00000019950	RNPC3	95	54.871	Aotus_nancymaae
ENSCVAG00000002645	rnpc3	99	78.865	ENSACLG00000014702	rnpc3	99	78.865	Astatotilapia_calliptera
ENSCVAG00000002645	rnpc3	99	64.147	ENSAMXG00000033372	rnpc3	99	64.147	Astyanax_mexicanus
ENSCVAG00000002645	rnpc3	97	55.248	ENSBTAG00000019091	RNPC3	94	55.578	Bos_taurus
ENSCVAG00000002645	rnpc3	96	54.274	ENSCJAG00000035686	RNPC3	94	54.076	Callithrix_jacchus
ENSCVAG00000002645	rnpc3	97	54.851	ENSCAFG00000019972	RNPC3	94	55.179	Canis_familiaris
ENSCVAG00000002645	rnpc3	97	54.851	ENSCAFG00020011300	RNPC3	94	55.179	Canis_lupus_dingo
ENSCVAG00000002645	rnpc3	97	55.621	ENSCHIG00000020361	RNPC3	94	55.467	Capra_hircus
ENSCVAG00000002645	rnpc3	97	54.348	ENSTSYG00000030256	RNPC3	94	54.672	Carlito_syrichta
ENSCVAG00000002645	rnpc3	86	44.934	ENSCAPG00000013600	RNPC3	97	44.420	Cavia_aperea
ENSCVAG00000002645	rnpc3	97	52.539	ENSCPOG00000031638	RNPC3	94	52.849	Cavia_porcellus
ENSCVAG00000002645	rnpc3	96	54.473	ENSCCAG00000024301	RNPC3	95	54.183	Cebus_capucinus
ENSCVAG00000002645	rnpc3	96	54.672	ENSCATG00000002086	RNPC3	94	53.543	Cercocebus_atys
ENSCVAG00000002645	rnpc3	96	41.235	ENSCATG00000035930	-	52	47.755	Cercocebus_atys
ENSCVAG00000002645	rnpc3	97	51.625	ENSCLAG00000005169	RNPC3	94	52.277	Chinchilla_lanigera
ENSCVAG00000002645	rnpc3	96	54.672	ENSCSAG00000001519	RNPC3	94	54.672	Chlorocebus_sabaeus
ENSCVAG00000002645	rnpc3	97	55.248	ENSCPBG00000028311	RNPC3	95	55.819	Chrysemys_picta_bellii
ENSCVAG00000002645	rnpc3	61	50.000	ENSCSAVG00000002800	-	76	50.000	Ciona_savignyi
ENSCVAG00000002645	rnpc3	96	54.274	ENSCANG00000031444	RNPC3	94	53.150	Colobus_angolensis_palliatus
ENSCVAG00000002645	rnpc3	99	53.606	ENSCGRG00001019276	Rnpc3	96	53.922	Cricetulus_griseus_chok1gshd
ENSCVAG00000002645	rnpc3	90	51.923	ENSCGRG00000000053	Rnpc3	99	52.258	Cricetulus_griseus_crigri
ENSCVAG00000002645	rnpc3	99	74.023	ENSCSEG00000013475	rnpc3	99	74.023	Cynoglossus_semilaevis
ENSCVAG00000002645	rnpc3	99	65.698	ENSDARG00000011247	rnpc3	98	66.602	Danio_rerio
ENSCVAG00000002645	rnpc3	97	54.545	ENSDNOG00000044555	-	94	54.871	Dasypus_novemcinctus
ENSCVAG00000002645	rnpc3	97	55.138	ENSDNOG00000047498	-	95	55.138	Dasypus_novemcinctus
ENSCVAG00000002645	rnpc3	97	52.930	ENSDORG00000027343	Rnpc3	95	52.930	Dipodomys_ordii
ENSCVAG00000002645	rnpc3	54	41.667	FBgn0265184	CG44249	68	41.667	Drosophila_melanogaster
ENSCVAG00000002645	rnpc3	99	47.850	ENSEBUG00000002068	rnpc3	99	47.753	Eptatretus_burgeri
ENSCVAG00000002645	rnpc3	97	55.138	ENSEASG00005015957	RNPC3	94	55.467	Equus_asinus_asinus
ENSCVAG00000002645	rnpc3	97	55.336	ENSECAG00000021148	RNPC3	94	55.666	Equus_caballus
ENSCVAG00000002645	rnpc3	99	68.130	ENSELUG00000002264	rnpc3	99	66.412	Esox_lucius
ENSCVAG00000002645	rnpc3	99	53.578	ENSFCAG00000024312	RNPC3	95	53.891	Felis_catus
ENSCVAG00000002645	rnpc3	89	54.329	ENSFALG00000002580	RNPC3	99	53.680	Ficedula_albicollis
ENSCVAG00000002645	rnpc3	97	54.134	ENSFDAG00000019948	RNPC3	95	54.134	Fukomys_damarensis
ENSCVAG00000002645	rnpc3	100	81.250	ENSFHEG00000020647	rnpc3	100	81.055	Fundulus_heteroclitus
ENSCVAG00000002645	rnpc3	100	67.829	ENSGMOG00000019213	rnpc3	99	68.023	Gadus_morhua
ENSCVAG00000002645	rnpc3	96	54.980	ENSGALG00000005162	RNPC3	88	54.382	Gallus_gallus
ENSCVAG00000002645	rnpc3	100	85.214	ENSGAFG00000017236	rnpc3	100	85.547	Gambusia_affinis
ENSCVAG00000002645	rnpc3	100	79.110	ENSGACG00000002048	rnpc3	99	79.304	Gasterosteus_aculeatus
ENSCVAG00000002645	rnpc3	97	55.842	ENSGAGG00000008438	RNPC3	94	55.644	Gopherus_agassizii
ENSCVAG00000002645	rnpc3	97	48.600	ENSGGOG00000026201	-	95	48.400	Gorilla_gorilla
ENSCVAG00000002645	rnpc3	83	81.250	ENSHBUG00000015966	rnpc3	85	81.250	Haplochromis_burtoni
ENSCVAG00000002645	rnpc3	97	53.740	ENSHGLG00000001708	RNPC3	94	54.076	Heterocephalus_glaber_female
ENSCVAG00000002645	rnpc3	97	53.740	ENSHGLG00100003005	RNPC3	94	54.076	Heterocephalus_glaber_male
ENSCVAG00000002645	rnpc3	99	73.684	ENSHCOG00000017135	rnpc3	100	73.684	Hippocampus_comes
ENSCVAG00000002645	rnpc3	99	62.768	ENSIPUG00000002916	rnpc3	99	62.768	Ictalurus_punctatus
ENSCVAG00000002645	rnpc3	97	53.846	ENSSTOG00000025020	RNPC3	95	53.216	Ictidomys_tridecemlineatus
ENSCVAG00000002645	rnpc3	97	53.033	ENSJJAG00000010203	Rnpc3	97	52.510	Jaculus_jaculus
ENSCVAG00000002645	rnpc3	99	81.729	ENSKMAG00000017358	rnpc3	99	81.336	Kryptolebias_marmoratus
ENSCVAG00000002645	rnpc3	100	79.377	ENSLBEG00000024901	rnpc3	98	79.377	Labrus_bergylta
ENSCVAG00000002645	rnpc3	97	57.937	ENSLACG00000005720	RNPC3	90	57.738	Latimeria_chalumnae
ENSCVAG00000002645	rnpc3	99	62.646	ENSLOCG00000007986	rnpc3	99	61.673	Lepisosteus_oculatus
ENSCVAG00000002645	rnpc3	97	54.941	ENSLAFG00000032342	RNPC3	94	55.268	Loxodonta_africana
ENSCVAG00000002645	rnpc3	96	40.080	ENSMFAG00000002917	-	94	40.319	Macaca_fascicularis
ENSCVAG00000002645	rnpc3	96	54.672	ENSMFAG00000002004	RNPC3	94	53.543	Macaca_fascicularis
ENSCVAG00000002645	rnpc3	79	48.430	ENSMMUG00000002098	-	85	48.430	Macaca_mulatta
ENSCVAG00000002645	rnpc3	96	54.473	ENSMMUG00000018039	RNPC3	94	53.346	Macaca_mulatta
ENSCVAG00000002645	rnpc3	96	51.690	ENSMNEG00000033950	RNPC3	94	50.591	Macaca_nemestrina
ENSCVAG00000002645	rnpc3	96	39.235	ENSMNEG00000029209	-	94	39.638	Macaca_nemestrina
ENSCVAG00000002645	rnpc3	96	40.546	ENSMLEG00000034644	-	95	40.000	Mandrillus_leucophaeus
ENSCVAG00000002645	rnpc3	96	54.672	ENSMLEG00000033628	RNPC3	94	53.543	Mandrillus_leucophaeus
ENSCVAG00000002645	rnpc3	100	70.760	ENSMAMG00000007496	rnpc3	100	70.760	Mastacembelus_armatus
ENSCVAG00000002645	rnpc3	99	79.961	ENSMZEG00005020233	rnpc3	99	79.961	Maylandia_zebra
ENSCVAG00000002645	rnpc3	89	54.545	ENSMGAG00000006381	RNPC3	99	53.896	Meleagris_gallopavo
ENSCVAG00000002645	rnpc3	97	54.653	ENSMAUG00000001358	Rnpc3	94	54.980	Mesocricetus_auratus
ENSCVAG00000002645	rnpc3	96	54.183	ENSMICG00000029591	RNPC3	95	54.183	Microcebus_murinus
ENSCVAG00000002645	rnpc3	97	53.953	ENSMOCG00000013423	Rnpc3	94	54.274	Microtus_ochrogaster
ENSCVAG00000002645	rnpc3	100	70.760	ENSMMOG00000005309	rnpc3	100	70.175	Mola_mola
ENSCVAG00000002645	rnpc3	97	53.892	ENSMODG00000002946	RNPC3	95	53.892	Monodelphis_domestica
ENSCVAG00000002645	rnpc3	99	74.753	ENSMALG00000015471	rnpc3	99	74.753	Monopterus_albus
ENSCVAG00000002645	rnpc3	97	54.762	MGP_CAROLIEiJ_G0025555	Rnpc3	96	55.090	Mus_caroli
ENSCVAG00000002645	rnpc3	97	54.348	ENSMUSG00000027981	Rnpc3	99	52.830	Mus_musculus
ENSCVAG00000002645	rnpc3	99	53.606	MGP_PahariEiJ_G0027001	Rnpc3	97	53.922	Mus_pahari
ENSCVAG00000002645	rnpc3	97	51.149	MGP_SPRETEiJ_G0026505	Rnpc3	96	54.672	Mus_spretus
ENSCVAG00000002645	rnpc3	97	54.762	ENSMPUG00000007349	RNPC3	94	55.090	Mustela_putorius_furo
ENSCVAG00000002645	rnpc3	97	53.557	ENSMLUG00000028743	RNPC3	94	53.557	Myotis_lucifugus
ENSCVAG00000002645	rnpc3	97	53.137	ENSNGAG00000010939	Rnpc3	95	53.452	Nannospalax_galili
ENSCVAG00000002645	rnpc3	99	79.256	ENSNBRG00000012196	rnpc3	96	79.256	Neolamprologus_brichardi
ENSCVAG00000002645	rnpc3	96	54.781	ENSNLEG00000012013	RNPC3	95	53.649	Nomascus_leucogenys
ENSCVAG00000002645	rnpc3	97	53.373	ENSODEG00000007612	RNPC3	94	53.707	Octodon_degus
ENSCVAG00000002645	rnpc3	99	81.092	ENSONIG00000004770	rnpc3	100	81.526	Oreochromis_niloticus
ENSCVAG00000002645	rnpc3	93	55.532	ENSOANG00000008220	RNPC3	100	54.489	Ornithorhynchus_anatinus
ENSCVAG00000002645	rnpc3	97	54.528	ENSOCUG00000004016	RNPC3	95	53.516	Oryctolagus_cuniculus
ENSCVAG00000002645	rnpc3	100	78.599	ENSORLG00000005694	rnpc3	100	78.599	Oryzias_latipes
ENSCVAG00000002645	rnpc3	100	78.405	ENSORLG00020005513	rnpc3	100	78.405	Oryzias_latipes_hni
ENSCVAG00000002645	rnpc3	100	78.405	ENSORLG00015002179	rnpc3	100	78.405	Oryzias_latipes_hsok
ENSCVAG00000002645	rnpc3	100	79.377	ENSOMEG00000017737	rnpc3	100	79.377	Oryzias_melastigma
ENSCVAG00000002645	rnpc3	97	54.941	ENSOGAG00000026182	RNPC3	94	55.268	Otolemur_garnettii
ENSCVAG00000002645	rnpc3	97	55.621	ENSOARG00000018719	RNPC3	94	55.467	Ovis_aries
ENSCVAG00000002645	rnpc3	96	54.563	ENSPPAG00000037459	RNPC3	95	54.563	Pan_paniscus
ENSCVAG00000002645	rnpc3	97	48.297	ENSPPAG00000030278	-	97	48.000	Pan_paniscus
ENSCVAG00000002645	rnpc3	99	54.207	ENSPPRG00000020246	RNPC3	95	53.891	Panthera_pardus
ENSCVAG00000002645	rnpc3	99	54.207	ENSPTIG00000009887	RNPC3	97	53.891	Panthera_tigris_altaica
ENSCVAG00000002645	rnpc3	97	47.600	ENSPTRG00000044227	-	97	47.600	Pan_troglodytes
ENSCVAG00000002645	rnpc3	96	54.473	ENSPTRG00000033902	RNPC3	95	53.346	Pan_troglodytes
ENSCVAG00000002645	rnpc3	96	54.781	ENSPANG00000012137	RNPC3	94	53.649	Papio_anubis
ENSCVAG00000002645	rnpc3	96	43.615	ENSPANG00000029957	-	96	41.897	Papio_anubis
ENSCVAG00000002645	rnpc3	99	64.202	ENSPKIG00000008828	rnpc3	99	63.636	Paramormyrops_kingsleyae
ENSCVAG00000002645	rnpc3	65	52.212	ENSPSIG00000007396	RNPC3	99	52.507	Pelodiscus_sinensis
ENSCVAG00000002645	rnpc3	99	63.883	ENSPMGG00000011742	rnpc3	100	63.495	Periophthalmus_magnuspinnatus
ENSCVAG00000002645	rnpc3	90	52.137	ENSPEMG00000020112	Rnpc3	99	52.473	Peromyscus_maniculatus_bairdii
ENSCVAG00000002645	rnpc3	95	41.917	ENSPMAG00000003778	rnpc3	95	45.385	Petromyzon_marinus
ENSCVAG00000002645	rnpc3	97	54.291	ENSPCIG00000004415	-	95	54.291	Phascolarctos_cinereus
ENSCVAG00000002645	rnpc3	99	85.855	ENSPFOG00000009895	rnpc3	99	85.855	Poecilia_formosa
ENSCVAG00000002645	rnpc3	99	85.855	ENSPLAG00000012023	rnpc3	99	85.855	Poecilia_latipinna
ENSCVAG00000002645	rnpc3	99	86.051	ENSPMEG00000003663	rnpc3	99	86.051	Poecilia_mexicana
ENSCVAG00000002645	rnpc3	100	84.961	ENSPREG00000010206	rnpc3	100	84.961	Poecilia_reticulata
ENSCVAG00000002645	rnpc3	81	50.948	ENSPPYG00000001102	RNPC3	93	49.649	Pongo_abelii
ENSCVAG00000002645	rnpc3	99	78.865	ENSPNYG00000020603	rnpc3	99	78.865	Pundamilia_nyererei
ENSCVAG00000002645	rnpc3	97	54.762	ENSRNOG00000017310	Rnpc3	94	55.090	Rattus_norvegicus
ENSCVAG00000002645	rnpc3	96	50.595	ENSRBIG00000043897	RNPC3	94	50.595	Rhinopithecus_bieti
ENSCVAG00000002645	rnpc3	96	54.672	ENSRROG00000032334	RNPC3	94	53.543	Rhinopithecus_roxellana
ENSCVAG00000002645	rnpc3	96	54.781	ENSSBOG00000024473	RNPC3	95	54.781	Saimiri_boliviensis_boliviensis
ENSCVAG00000002645	rnpc3	97	53.693	ENSSHAG00000011859	RNPC3	95	53.693	Sarcophilus_harrisii
ENSCVAG00000002645	rnpc3	97	68.064	ENSSFOG00015013055	rnpc3	99	66.866	Scleropages_formosus
ENSCVAG00000002645	rnpc3	100	75.775	ENSSMAG00000020346	rnpc3	100	77.132	Scophthalmus_maximus
ENSCVAG00000002645	rnpc3	100	80.156	ENSSDUG00000006600	rnpc3	100	80.156	Seriola_dumerili
ENSCVAG00000002645	rnpc3	100	80.350	ENSSLDG00000007979	rnpc3	100	80.350	Seriola_lalandi_dorsalis
ENSCVAG00000002645	rnpc3	95	56.795	ENSSPUG00000008539	-	92	56.795	Sphenodon_punctatus
ENSCVAG00000002645	rnpc3	97	51.904	ENSSPUG00000003872	-	92	52.104	Sphenodon_punctatus
ENSCVAG00000002645	rnpc3	100	80.859	ENSSPAG00000005633	rnpc3	100	80.664	Stegastes_partitus
ENSCVAG00000002645	rnpc3	97	53.269	ENSSSCG00000037254	RNPC3	94	53.678	Sus_scrofa
ENSCVAG00000002645	rnpc3	89	54.881	ENSTGUG00000004795	-	99	53.796	Taeniopygia_guttata
ENSCVAG00000002645	rnpc3	99	73.398	ENSTNIG00000018963	rnpc3	100	73.398	Tetraodon_nigroviridis
ENSCVAG00000002645	rnpc3	97	54.851	ENSUMAG00000007775	RNPC3	96	54.528	Ursus_maritimus
ENSCVAG00000002645	rnpc3	97	54.851	ENSVVUG00000000331	RNPC3	94	55.179	Vulpes_vulpes
ENSCVAG00000002645	rnpc3	96	44.752	ENSXETG00000025027	rnpc3	96	44.024	Xenopus_tropicalis
ENSCVAG00000002645	rnpc3	54	85.145	ENSXCOG00000005013	rnpc3	100	83.556	Xiphophorus_couchianus
ENSCVAG00000002645	rnpc3	100	85.992	ENSXMAG00000006495	rnpc3	100	86.328	Xiphophorus_maculatus