EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000002797 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 5543 bases
Position: chrKL654062.1:114634-120176
Accession: 107103912
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000001780	RRM_1	PF00076.22	5.9e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000012831	-	867	XM_015403770	ENSCVAP00000001780	288 (aa)	XP_015259256	-

Gene Model

Click here to download ENSCVAG00000002797's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000002797's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000002797	-	71	47.368	ENSCVAG00000013624	-	76	50.679
ENSCVAG00000002797	-	98	45.033	ENSCVAG00000018104	-	74	53.363
ENSCVAG00000002797	-	85	66.406	ENSCVAG00000016981	-	96	61.129

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000002797	-	90	45.926	ENSG00000184672	RALYL	93	74.684	Homo_sapiens
ENSCVAG00000002797	-	85	71.825	ENSAPOG00000006963	hnrnpc	89	73.723	Acanthochromis_polyacanthus
ENSCVAG00000002797	-	99	55.254	ENSACIG00000016568	-	96	60.448	Amphilophus_citrinellus
ENSCVAG00000002797	-	92	73.455	ENSACIG00000000270	-	92	76.000	Amphilophus_citrinellus
ENSCVAG00000002797	-	85	72.222	ENSAOCG00000003896	-	89	74.088	Amphiprion_ocellaris
ENSCVAG00000002797	-	85	66.142	ENSAOCG00000021616	-	86	65.836	Amphiprion_ocellaris
ENSCVAG00000002797	-	99	57.576	ENSAPEG00000019962	-	89	65.836	Amphiprion_percula
ENSCVAG00000002797	-	85	72.222	ENSAPEG00000001489	-	89	74.088	Amphiprion_percula
ENSCVAG00000002797	-	86	66.923	ENSATEG00000018006	-	85	67.509	Anabas_testudineus
ENSCVAG00000002797	-	86	70.703	ENSATEG00000011734	-	99	72.148	Anabas_testudineus
ENSCVAG00000002797	-	70	51.111	ENSAPLG00000015574	RALYL	76	48.444	Anas_platyrhynchos
ENSCVAG00000002797	-	98	43.087	ENSACAG00000028464	RALYL	75	48.899	Anolis_carolinensis
ENSCVAG00000002797	-	90	45.556	ENSANAG00000023383	RALYL	94	42.537	Aotus_nancymaae
ENSCVAG00000002797	-	91	74.444	ENSACLG00000013636	-	89	75.000	Astatotilapia_calliptera
ENSCVAG00000002797	-	86	64.865	ENSACLG00000005707	-	92	65.455	Astatotilapia_calliptera
ENSCVAG00000002797	-	91	74.815	ENSACLG00000000995	-	96	73.311	Astatotilapia_calliptera
ENSCVAG00000002797	-	82	63.786	ENSAMXG00000034915	zgc:55733	92	62.593	Astyanax_mexicanus
ENSCVAG00000002797	-	70	56.604	ENSAMXG00000042946	hnrnpc	97	60.317	Astyanax_mexicanus
ENSCVAG00000002797	-	90	45.926	ENSCJAG00000000402	RALYL	94	42.537	Callithrix_jacchus
ENSCVAG00000002797	-	97	44.590	ENSCPOG00000012314	RALYL	95	44.876	Cavia_porcellus
ENSCVAG00000002797	-	90	46.296	ENSCCAG00000025003	RALYL	77	74.684	Cebus_capucinus
ENSCVAG00000002797	-	90	45.926	ENSCATG00000042145	RALYL	94	42.537	Cercocebus_atys
ENSCVAG00000002797	-	97	44.590	ENSCLAG00000005228	RALYL	94	44.484	Chinchilla_lanigera
ENSCVAG00000002797	-	70	49.780	ENSCHOG00000013228	RALYL	75	48.458	Choloepus_hoffmanni
ENSCVAG00000002797	-	90	45.926	ENSCANG00000039144	RALYL	94	42.537	Colobus_angolensis_palliatus
ENSCVAG00000002797	-	97	44.079	ENSCGRG00001009241	Ralyl	96	42.907	Cricetulus_griseus_chok1gshd
ENSCVAG00000002797	-	72	65.438	ENSCSEG00000019769	-	73	66.359	Cynoglossus_semilaevis
ENSCVAG00000002797	-	78	66.809	ENSCSEG00000021349	-	86	61.029	Cynoglossus_semilaevis
ENSCVAG00000002797	-	78	67.811	ENSDARG00000103845	zgc:55733	96	62.921	Danio_rerio
ENSCVAG00000002797	-	79	63.445	ENSDARG00000053810	hnrnpc	84	61.397	Danio_rerio
ENSCVAG00000002797	-	97	44.918	ENSDORG00000003721	Ralyl	75	49.780	Dipodomys_ordii
ENSCVAG00000002797	-	54	53.179	ENSETEG00000014028	RALYL	56	68.519	Echinops_telfairi
ENSCVAG00000002797	-	94	39.510	ENSEBUG00000006049	RALYL	94	40.000	Eptatretus_burgeri
ENSCVAG00000002797	-	71	47.556	ENSEBUG00000012363	hnrnpc	76	43.273	Eptatretus_burgeri
ENSCVAG00000002797	-	97	45.098	ENSEEUG00000007202	RALYL	96	44.170	Erinaceus_europaeus
ENSCVAG00000002797	-	78	66.667	ENSELUG00000007714	-	97	63.415	Esox_lucius
ENSCVAG00000002797	-	86	64.259	ENSELUG00000004132	-	93	65.942	Esox_lucius
ENSCVAG00000002797	-	70	53.271	ENSFALG00000008647	RALYL	97	50.467	Ficedula_albicollis
ENSCVAG00000002797	-	91	76.667	ENSFHEG00000003605	-	90	77.007	Fundulus_heteroclitus
ENSCVAG00000002797	-	86	62.271	ENSFHEG00000007278	-	99	59.574	Fundulus_heteroclitus
ENSCVAG00000002797	-	70	52.804	ENSGALG00000036938	RALYL	75	48.444	Gallus_gallus
ENSCVAG00000002797	-	99	54.915	ENSGAFG00000020992	-	99	58.845	Gambusia_affinis
ENSCVAG00000002797	-	98	76.632	ENSGAFG00000020486	-	96	76.610	Gambusia_affinis
ENSCVAG00000002797	-	72	67.943	ENSGACG00000018932	-	89	67.907	Gasterosteus_aculeatus
ENSCVAG00000002797	-	89	64.312	ENSGACG00000017772	-	99	65.056	Gasterosteus_aculeatus
ENSCVAG00000002797	-	90	45.926	ENSGGOG00000000841	RALYL	94	42.537	Gorilla_gorilla
ENSCVAG00000002797	-	91	75.185	ENSHBUG00000018342	-	96	73.649	Haplochromis_burtoni
ENSCVAG00000002797	-	86	64.865	ENSHBUG00000010527	-	86	65.108	Haplochromis_burtoni
ENSCVAG00000002797	-	97	44.262	ENSHGLG00000004866	RALYL	94	44.128	Heterocephalus_glaber_female
ENSCVAG00000002797	-	97	44.262	ENSHGLG00100017480	RALYL	94	44.128	Heterocephalus_glaber_male
ENSCVAG00000002797	-	84	62.642	ENSHCOG00000012333	hnrnpc	96	60.738	Hippocampus_comes
ENSCVAG00000002797	-	85	65.490	ENSIPUG00000011271	hnrnpc	97	68.000	Ictalurus_punctatus
ENSCVAG00000002797	-	82	64.876	ENSIPUG00000008666	zgc:55733	93	68.224	Ictalurus_punctatus
ENSCVAG00000002797	-	97	44.444	ENSSTOG00000012583	RALYL	76	48.899	Ictidomys_tridecemlineatus
ENSCVAG00000002797	-	92	74.265	ENSKMAG00000011170	-	89	77.007	Kryptolebias_marmoratus
ENSCVAG00000002797	-	85	65.354	ENSKMAG00000018265	-	86	65.468	Kryptolebias_marmoratus
ENSCVAG00000002797	-	92	66.192	ENSLBEG00000024418	-	91	66.548	Labrus_bergylta
ENSCVAG00000002797	-	85	65.625	ENSLBEG00000006193	-	86	66.304	Labrus_bergylta
ENSCVAG00000002797	-	90	69.403	ENSLBEG00000006979	-	90	69.403	Labrus_bergylta
ENSCVAG00000002797	-	86	58.175	ENSLOCG00000002560	hnrnpc	95	60.000	Lepisosteus_oculatus
ENSCVAG00000002797	-	90	45.926	ENSMNEG00000033288	RALYL	94	42.537	Macaca_nemestrina
ENSCVAG00000002797	-	90	45.926	ENSMLEG00000038284	RALYL	94	42.537	Mandrillus_leucophaeus
ENSCVAG00000002797	-	86	66.923	ENSMAMG00000008033	-	96	66.786	Mastacembelus_armatus
ENSCVAG00000002797	-	91	72.901	ENSMAMG00000012236	-	87	75.940	Mastacembelus_armatus
ENSCVAG00000002797	-	86	64.865	ENSMZEG00005024249	-	86	65.455	Maylandia_zebra
ENSCVAG00000002797	-	91	74.815	ENSMZEG00005020460	-	96	73.311	Maylandia_zebra
ENSCVAG00000002797	-	97	44.079	ENSMAUG00000015149	Ralyl	96	42.907	Mesocricetus_auratus
ENSCVAG00000002797	-	70	52.558	ENSMICG00000005558	RALYL	80	75.949	Microcebus_murinus
ENSCVAG00000002797	-	70	51.111	ENSMOCG00000017371	Ralyl	75	48.458	Microtus_ochrogaster
ENSCVAG00000002797	-	86	72.266	ENSMMOG00000021465	-	94	72.222	Mola_mola
ENSCVAG00000002797	-	84	63.347	ENSMMOG00000019520	-	88	64.552	Mola_mola
ENSCVAG00000002797	-	86	67.054	ENSMALG00000014623	-	88	66.192	Monopterus_albus
ENSCVAG00000002797	-	100	70.588	ENSMALG00000007520	-	100	70.934	Monopterus_albus
ENSCVAG00000002797	-	97	43.750	ENSMUSG00000039717	Ralyl	93	73.418	Mus_musculus
ENSCVAG00000002797	-	70	50.667	ENSMPUG00000010724	RALYL	75	48.899	Mustela_putorius_furo
ENSCVAG00000002797	-	97	43.750	ENSNGAG00000013375	Ralyl	75	49.339	Nannospalax_galili
ENSCVAG00000002797	-	86	64.865	ENSNBRG00000015676	-	93	59.851	Neolamprologus_brichardi
ENSCVAG00000002797	-	92	75.547	ENSNBRG00000004912	-	90	75.547	Neolamprologus_brichardi
ENSCVAG00000002797	-	90	45.926	ENSNLEG00000002702	RALYL	90	42.537	Nomascus_leucogenys
ENSCVAG00000002797	-	59	47.423	ENSOPRG00000013650	-	98	44.792	Ochotona_princeps
ENSCVAG00000002797	-	87	45.878	ENSODEG00000001012	RALYL	94	43.728	Octodon_degus
ENSCVAG00000002797	-	85	75.000	ENSONIG00000007859	-	95	74.368	Oreochromis_niloticus
ENSCVAG00000002797	-	86	64.865	ENSONIG00000018350	-	86	65.108	Oreochromis_niloticus
ENSCVAG00000002797	-	85	64.885	ENSORLG00000003144	-	85	65.141	Oryzias_latipes
ENSCVAG00000002797	-	98	67.918	ENSORLG00000009999	-	96	69.360	Oryzias_latipes
ENSCVAG00000002797	-	98	67.577	ENSORLG00020018228	hnrnpc	96	69.024	Oryzias_latipes_hni
ENSCVAG00000002797	-	98	67.918	ENSORLG00015019755	-	96	69.360	Oryzias_latipes_hsok
ENSCVAG00000002797	-	85	64.885	ENSORLG00015009460	-	84	65.141	Oryzias_latipes_hsok
ENSCVAG00000002797	-	85	67.843	ENSOMEG00000022665	-	85	67.870	Oryzias_melastigma
ENSCVAG00000002797	-	85	69.960	ENSOMEG00000020488	-	96	70.707	Oryzias_melastigma
ENSCVAG00000002797	-	90	45.926	ENSPPAG00000038705	RALYL	94	42.537	Pan_paniscus
ENSCVAG00000002797	-	70	52.315	ENSPPRG00000018612	RALYL	74	50.926	Panthera_pardus
ENSCVAG00000002797	-	70	52.315	ENSPTIG00000020331	RALYL	74	50.926	Panthera_tigris_altaica
ENSCVAG00000002797	-	90	45.926	ENSPTRG00000020381	RALYL	94	42.537	Pan_troglodytes
ENSCVAG00000002797	-	90	45.926	ENSPANG00000029305	RALYL	94	42.537	Papio_anubis
ENSCVAG00000002797	-	86	63.498	ENSPKIG00000008592	-	88	64.311	Paramormyrops_kingsleyae
ENSCVAG00000002797	-	77	66.667	ENSPKIG00000022837	-	88	66.548	Paramormyrops_kingsleyae
ENSCVAG00000002797	-	70	51.111	ENSPSIG00000011135	RALYL	75	48.899	Pelodiscus_sinensis
ENSCVAG00000002797	-	72	71.296	ENSPMGG00000013144	-	81	71.296	Periophthalmus_magnuspinnatus
ENSCVAG00000002797	-	69	67.150	ENSPMGG00000017774	-	88	55.924	Periophthalmus_magnuspinnatus
ENSCVAG00000002797	-	97	44.079	ENSPEMG00000016447	Ralyl	96	42.907	Peromyscus_maniculatus_bairdii
ENSCVAG00000002797	-	70	46.930	ENSPMAG00000002407	RALYL	97	46.903	Petromyzon_marinus
ENSCVAG00000002797	-	98	76.370	ENSPFOG00000001583	-	96	76.689	Poecilia_formosa
ENSCVAG00000002797	-	98	58.576	ENSPFOG00000002643	-	86	65.480	Poecilia_formosa
ENSCVAG00000002797	-	98	76.289	ENSPLAG00000015305	-	96	76.610	Poecilia_latipinna
ENSCVAG00000002797	-	85	66.142	ENSPLAG00000000061	-	86	65.480	Poecilia_latipinna
ENSCVAG00000002797	-	85	65.748	ENSPMEG00000016524	-	86	64.769	Poecilia_mexicana
ENSCVAG00000002797	-	98	76.976	ENSPMEG00000004802	-	96	77.288	Poecilia_mexicana
ENSCVAG00000002797	-	98	76.976	ENSPREG00000007928	-	96	77.288	Poecilia_reticulata
ENSCVAG00000002797	-	85	65.748	ENSPREG00000001852	-	93	64.894	Poecilia_reticulata
ENSCVAG00000002797	-	89	41.923	ENSPPYG00000018710	-	94	42.146	Pongo_abelii
ENSCVAG00000002797	-	70	50.893	ENSPVAG00000010821	RALYL	94	42.254	Pteropus_vampyrus
ENSCVAG00000002797	-	93	72.043	ENSPNYG00000020293	-	91	75.373	Pundamilia_nyererei
ENSCVAG00000002797	-	99	55.102	ENSPNYG00000003747	-	92	65.108	Pundamilia_nyererei
ENSCVAG00000002797	-	80	63.445	ENSPNAG00000015686	hnrnpc	89	64.552	Pygocentrus_nattereri
ENSCVAG00000002797	-	81	65.992	ENSPNAG00000019200	zgc:55733	88	62.230	Pygocentrus_nattereri
ENSCVAG00000002797	-	90	45.926	ENSRROG00000023925	RALYL	82	72.840	Rhinopithecus_roxellana
ENSCVAG00000002797	-	85	62.214	ENSSFOG00015012924	-	80	88.608	Scleropages_formosus
ENSCVAG00000002797	-	86	63.985	ENSSFOG00015012015	-	82	70.093	Scleropages_formosus
ENSCVAG00000002797	-	85	65.476	ENSSMAG00000013592	-	87	68.613	Scophthalmus_maximus
ENSCVAG00000002797	-	84	63.529	ENSSMAG00000011147	-	96	58.271	Scophthalmus_maximus
ENSCVAG00000002797	-	86	66.409	ENSSDUG00000006730	-	86	67.273	Seriola_dumerili
ENSCVAG00000002797	-	91	70.370	ENSSDUG00000001723	-	89	73.358	Seriola_dumerili
ENSCVAG00000002797	-	86	66.409	ENSSLDG00000007474	-	94	67.273	Seriola_lalandi_dorsalis
ENSCVAG00000002797	-	89	70.076	ENSSLDG00000007454	-	89	72.794	Seriola_lalandi_dorsalis
ENSCVAG00000002797	-	90	70.787	ENSSPAG00000023204	-	89	73.723	Stegastes_partitus
ENSCVAG00000002797	-	86	67.054	ENSSPAG00000013996	-	96	65.049	Stegastes_partitus
ENSCVAG00000002797	-	70	51.111	ENSTGUG00000011689	RALYL	95	44.170	Taeniopygia_guttata
ENSCVAG00000002797	-	86	69.141	ENSTRUG00000020158	-	90	69.818	Takifugu_rubripes
ENSCVAG00000002797	-	86	64.368	ENSTNIG00000007427	-	88	65.934	Tetraodon_nigroviridis
ENSCVAG00000002797	-	85	61.479	ENSTNIG00000000334	-	99	63.235	Tetraodon_nigroviridis
ENSCVAG00000002797	-	70	44.978	ENSTBEG00000005551	RALYL	87	43.172	Tupaia_belangeri
ENSCVAG00000002797	-	72	48.927	ENSTTRG00000015762	RALYL	94	42.599	Tursiops_truncatus
ENSCVAG00000002797	-	70	47.768	ENSVPAG00000008501	RALYL	74	46.948	Vicugna_pacos
ENSCVAG00000002797	-	51	71.341	ENSXCOG00000019434	-	86	64.734	Xiphophorus_couchianus
ENSCVAG00000002797	-	89	81.712	ENSXCOG00000006552	-	86	81.712	Xiphophorus_couchianus
ENSCVAG00000002797	-	98	76.289	ENSXMAG00000009333	-	96	76.610	Xiphophorus_maculatus
ENSCVAG00000002797	-	85	65.354	ENSXMAG00000022849	-	90	64.894	Xiphophorus_maculatus