EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000002988 (Gene tree)
Gene ID: 107092832
Gene Symbol: ern1
Alias: sb:eu1005|zgc:109932
Full Name: endoplasmic reticulum to nucleus signaling 1
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 28299 bases
Position: chrKL652896.1:174147-202445
Accession: 107092832
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000001890	Ribonuc_2-5A	PF06479.12	2e-40	1	1
ENSCVAP00000001910	Ribonuc_2-5A	PF06479.12	2.1e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000012646	-	3129	-	ENSCVAP00000001890	1042 (aa)	-	-
ENSCVAT00000012623	-	4217	XM_015387494	ENSCVAP00000001910	1063 (aa)	XP_015242980	UPI00074299F6

Gene Model

Click here to download ENSCVAG00000002988's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000002988's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000002988	ern1	90	55.212	ENSCVAG00000015538	ern2	97	55.119

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000002988	ern1	97	88.374	ENSAPOG00000009999	ern1	94	88.276	Acanthochromis_polyacanthus
ENSCVAG00000002988	ern1	98	87.524	ENSACIG00000021716	ern1	99	84.147	Amphilophus_citrinellus
ENSCVAG00000002988	ern1	97	89.557	ENSAOCG00000012309	ern1	99	85.847	Amphiprion_ocellaris
ENSCVAG00000002988	ern1	97	89.163	ENSAPEG00000011263	ern1	98	92.532	Amphiprion_percula
ENSCVAG00000002988	ern1	97	88.264	ENSATEG00000024468	ern1	96	86.204	Anabas_testudineus
ENSCVAG00000002988	ern1	99	87.199	ENSACLG00000027919	ern1	97	86.433	Astatotilapia_calliptera
ENSCVAG00000002988	ern1	93	82.734	ENSAMXG00000000944	ern1	90	84.803	Astyanax_mexicanus
ENSCVAG00000002988	ern1	94	87.475	ENSCSEG00000014500	ern1	99	85.911	Cynoglossus_semilaevis
ENSCVAG00000002988	ern1	93	79.856	ENSDARG00000013997	ern1	97	81.635	Danio_rerio
ENSCVAG00000002988	ern1	93	79.919	ENSELUG00000005957	ern1	92	81.656	Esox_lucius
ENSCVAG00000002988	ern1	98	93.249	ENSFHEG00000005578	ern1	99	91.698	Fundulus_heteroclitus
ENSCVAG00000002988	ern1	90	85.897	ENSGMOG00000011232	ern1	100	85.897	Gadus_morhua
ENSCVAG00000002988	ern1	100	91.463	ENSGAFG00000020231	ern1	100	91.463	Gambusia_affinis
ENSCVAG00000002988	ern1	90	89.637	ENSGACG00000011700	ern1	97	89.637	Gasterosteus_aculeatus
ENSCVAG00000002988	ern1	96	87.858	ENSHBUG00000012581	ern1	95	87.721	Haplochromis_burtoni
ENSCVAG00000002988	ern1	96	84.226	ENSHCOG00000016199	ern1	93	85.451	Hippocampus_comes
ENSCVAG00000002988	ern1	93	82.088	ENSIPUG00000011083	ern1	90	84.076	Ictalurus_punctatus
ENSCVAG00000002988	ern1	97	88.083	ENSKMAG00000019499	ern1	98	85.094	Kryptolebias_marmoratus
ENSCVAG00000002988	ern1	98	81.063	ENSLBEG00000025907	ern1	99	81.063	Labrus_bergylta
ENSCVAG00000002988	ern1	99	86.372	ENSMAMG00000023439	ern1	98	85.893	Mastacembelus_armatus
ENSCVAG00000002988	ern1	99	87.199	ENSMZEG00005003221	ern1	97	86.433	Maylandia_zebra
ENSCVAG00000002988	ern1	93	87.795	ENSMMOG00000007650	ern1	96	88.211	Mola_mola
ENSCVAG00000002988	ern1	99	84.514	ENSMALG00000017775	ern1	96	84.245	Monopterus_albus
ENSCVAG00000002988	ern1	96	88.756	ENSNBRG00000002179	ern1	95	88.016	Neolamprologus_brichardi
ENSCVAG00000002988	ern1	91	89.507	ENSONIG00000017169	ern1	98	89.779	Oreochromis_niloticus
ENSCVAG00000002988	ern1	99	85.496	ENSORLG00000008940	ern1	97	85.319	Oryzias_latipes
ENSCVAG00000002988	ern1	96	87.119	ENSORLG00020018387	ern1	94	86.837	Oryzias_latipes_hni
ENSCVAG00000002988	ern1	96	86.922	ENSORLG00015007946	ern1	94	86.922	Oryzias_latipes_hsok
ENSCVAG00000002988	ern1	96	88.201	ENSOMEG00000011741	ern1	100	84.074	Oryzias_melastigma
ENSCVAG00000002988	ern1	91	83.525	ENSPKIG00000005593	ern1	96	84.127	Paramormyrops_kingsleyae
ENSCVAG00000002988	ern1	98	84.804	ENSPMGG00000020442	ern1	97	84.990	Periophthalmus_magnuspinnatus
ENSCVAG00000002988	ern1	100	91.745	ENSPFOG00000007378	ern1	100	91.745	Poecilia_formosa
ENSCVAG00000002988	ern1	100	91.745	ENSPLAG00000014780	ern1	100	91.745	Poecilia_latipinna
ENSCVAG00000002988	ern1	100	91.932	ENSPMEG00000016324	ern1	100	91.932	Poecilia_mexicana
ENSCVAG00000002988	ern1	100	91.276	ENSPREG00000006286	ern1	100	91.276	Poecilia_reticulata
ENSCVAG00000002988	ern1	99	87.103	ENSPNYG00000017929	ern1	98	88.922	Pundamilia_nyererei
ENSCVAG00000002988	ern1	94	82.622	ENSPNAG00000029447	ern1	90	85.684	Pygocentrus_nattereri
ENSCVAG00000002988	ern1	98	85.356	ENSSMAG00000015042	ern1	95	85.371	Scophthalmus_maximus
ENSCVAG00000002988	ern1	97	89.557	ENSSDUG00000009098	ern1	98	85.953	Seriola_dumerili
ENSCVAG00000002988	ern1	98	87.812	ENSSLDG00000023254	ern1	99	85.073	Seriola_lalandi_dorsalis
ENSCVAG00000002988	ern1	97	88.670	ENSSPAG00000017539	ern1	94	88.670	Stegastes_partitus
ENSCVAG00000002988	ern1	93	86.097	ENSTRUG00000001041	ern1	89	89.081	Takifugu_rubripes
ENSCVAG00000002988	ern1	89	89.711	ENSTNIG00000017990	ern1	98	89.479	Tetraodon_nigroviridis
ENSCVAG00000002988	ern1	94	94.882	ENSXCOG00000010330	ern1	97	94.882	Xiphophorus_couchianus
ENSCVAG00000002988	ern1	100	91.557	ENSXMAG00000001310	ern1	100	91.557	Xiphophorus_maculatus