EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCVAG00000003152 (Gene tree)
Gene ID
107095250
Gene Symbol
pabpn1
Alias
fb19c03|wu:fb17e03|wu:fb18c06|wu:fb19c03|zgc:85979|zgc:92452
Full Name
poly(A) binding protein nuclear 1
Gene Type
protein_coding
Species
Cyprinodon_variegatus
Status
putative
Strand
Minus strand
Length
12937 bases
Position
chrKL653033.1:521639-534575
Accession
107095250
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCVAP00000021240RRM_1PF00076.222.3e-1711
ENSCVAP00000021236RRM_1PF00076.223.7e-1711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCVAT00000012310-2138XM_015391259ENSCVAP00000021236293 (aa)XP_015246745-
ENSCVAT00000012305-3113XM_015391260ENSCVAP00000021240233 (aa)XP_015246746UPI0007427E73
Gene Model
Click here to download ENSCVAG00000003152's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000003152's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCVAG00000003152pabpn16361.438ENSCVAG00000015547PABPN1L5962.581
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCVAG00000003152pabpn19971.245ENSG00000258643BCL2L2-PABPN17069.528Homo_sapiens
ENSCVAG00000003152pabpn18681.068ENSG00000100836PABPN19477.976Homo_sapiens
ENSCVAG00000003152pabpn110095.299ENSAPOG00000016425pabpn110094.218Acanthochromis_polyacanthus
ENSCVAG00000003152pabpn18182.632ENSAMEG00000007048BCL2L2-PABPN110080.526Ailuropoda_melanoleuca
ENSCVAG00000003152pabpn110091.892ENSACIG00000021744pabpn110090.541Amphilophus_citrinellus
ENSCVAG00000003152pabpn110095.299ENSAOCG00000015805pabpn110094.017Amphiprion_ocellaris
ENSCVAG00000003152pabpn110095.299ENSAPEG00000009623pabpn110094.017Amphiprion_percula
ENSCVAG00000003152pabpn110095.299ENSATEG00000020531pabpn110094.017Anabas_testudineus
ENSCVAG00000003152pabpn18185.340ENSACAG00000006185-8168.313Anolis_carolinensis
ENSCVAG00000003152pabpn19967.480ENSANAG00000024513-8472.727Aotus_nancymaae
ENSCVAG00000003152pabpn110091.582ENSACLG00000016374pabpn110090.236Astatotilapia_calliptera
ENSCVAG00000003152pabpn110094.444ENSAMXG00000000452pabpn110091.453Astyanax_mexicanus
ENSCVAG00000003152pabpn18476.142ENSBTAG00000050594-6784.091Bos_taurus
ENSCVAG00000003152pabpn18482.323ENSBTAG00000006884PABPN18666.667Bos_taurus
ENSCVAG00000003152pabpn18281.771ENSBTAG00000053753-7179.688Bos_taurus
ENSCVAG00000003152pabpn16158.904WBGene00003904pabp-27158.904Caenorhabditis_elegans
ENSCVAG00000003152pabpn17178.571ENSCJAG00000004407-8476.190Callithrix_jacchus
ENSCVAG00000003152pabpn19974.678ENSCJAG00000007960-8473.391Callithrix_jacchus
ENSCVAG00000003152pabpn18681.068ENSCAFG00000011482PABPN18668.182Canis_familiaris
ENSCVAG00000003152pabpn18681.068ENSCAFG00020007298-8667.803Canis_lupus_dingo
ENSCVAG00000003152pabpn18681.068ENSCAFG00020006651-8667.803Canis_lupus_dingo
ENSCVAG00000003152pabpn18681.068ENSCHIG00000012184PABPN18667.803Capra_hircus
ENSCVAG00000003152pabpn19971.245ENSTSYG00000033996BCL2L2-PABPN19477.976Carlito_syrichta
ENSCVAG00000003152pabpn16079.856ENSCAPG00000009461-9478.030Cavia_aperea
ENSCVAG00000003152pabpn18680.583ENSCPOG00000025574PABPN16878.469Cavia_porcellus
ENSCVAG00000003152pabpn19974.678ENSCCAG00000033954BCL2L2-PABPN18473.391Cebus_capucinus
ENSCVAG00000003152pabpn19974.678ENSCATG00000038536BCL2L2-PABPN18473.391Cercocebus_atys
ENSCVAG00000003152pabpn16580.132ENSCLAG00000012423PABPN15677.483Chinchilla_lanigera
ENSCVAG00000003152pabpn18679.612ENSCSAG00000016036PABPN18565.649Chlorocebus_sabaeus
ENSCVAG00000003152pabpn18971.905ENSCHOG00000004798BCL2L2-PABPN19270.000Choloepus_hoffmanni
ENSCVAG00000003152pabpn17183.333ENSCPBG00000026060-9480.357Chrysemys_picta_bellii
ENSCVAG00000003152pabpn19061.321ENSCING00000012468-8960.849Ciona_intestinalis
ENSCVAG00000003152pabpn17662.570ENSCSAVG00000002001-9361.310Ciona_savignyi
ENSCVAG00000003152pabpn19971.245ENSCANG00000009750BCL2L2-PABPN19477.976Colobus_angolensis_palliatus
ENSCVAG00000003152pabpn18570.352ENSCANG00000030980-8762.185Colobus_angolensis_palliatus
ENSCVAG00000003152pabpn18680.583ENSCGRG00001019696Pabpn19477.381Cricetulus_griseus_chok1gshd
ENSCVAG00000003152pabpn16290.476ENSCGRG00000011102Pabpn19091.034Cricetulus_griseus_crigri
ENSCVAG00000003152pabpn110093.590ENSCSEG00000008774pabpn110091.880Cynoglossus_semilaevis
ENSCVAG00000003152pabpn110092.735ENSDARG00000045373pabpn110091.453Danio_rerio
ENSCVAG00000003152pabpn16360.667ENSDARG00000087996pabpn1l7267.521Danio_rerio
ENSCVAG00000003152pabpn18681.068ENSDNOG00000023682PABPN18667.803Dasypus_novemcinctus
ENSCVAG00000003152pabpn18680.097ENSDORG00000028966-8667.045Dipodomys_ordii
ENSCVAG00000003152pabpn15682.707ENSDORG00000023928-8581.967Dipodomys_ordii
ENSCVAG00000003152pabpn19757.511FBgn0005648Pabp28262.703Drosophila_melanogaster
ENSCVAG00000003152pabpn19971.915ENSEBUG00000002322pabpn19972.103Eptatretus_burgeri
ENSCVAG00000003152pabpn18681.068ENSEASG00005011716PABPN18667.803Equus_asinus_asinus
ENSCVAG00000003152pabpn18580.392ENSECAG00000011652PABPN18267.176Equus_caballus
ENSCVAG00000003152pabpn18679.126ENSEEUG00000012973-7178.947Erinaceus_europaeus
ENSCVAG00000003152pabpn110090.336ENSELUG00000022654pabpn110087.815Esox_lucius
ENSCVAG00000003152pabpn18681.068ENSFCAG00000031922PABPN18667.803Felis_catus
ENSCVAG00000003152pabpn17179.762ENSFDAG00000018381BCL2L2-PABPN19477.381Fukomys_damarensis
ENSCVAG00000003152pabpn110094.872ENSFHEG00000007215pabpn110091.880Fundulus_heteroclitus
ENSCVAG00000003152pabpn110088.776ENSGMOG00000003922pabpn110088.095Gadus_morhua
ENSCVAG00000003152pabpn18384.264ENSGALG00000052930-6182.857Gallus_gallus
ENSCVAG00000003152pabpn110096.581ENSGAFG00000017099pabpn110096.581Gambusia_affinis
ENSCVAG00000003152pabpn110092.517ENSGACG00000002167pabpn110092.517Gasterosteus_aculeatus
ENSCVAG00000003152pabpn18968.269ENSGGOG00000039675-9162.917Gorilla_gorilla
ENSCVAG00000003152pabpn19465.385ENSGGOG00000025919-9865.101Gorilla_gorilla
ENSCVAG00000003152pabpn19974.678ENSGGOG00000022683-8473.391Gorilla_gorilla
ENSCVAG00000003152pabpn110094.444ENSHBUG00000019523pabpn110093.162Haplochromis_burtoni
ENSCVAG00000003152pabpn17161.905ENSHGLG00000009842-9360.119Heterocephalus_glaber_female
ENSCVAG00000003152pabpn18769.231ENSHGLG00000018588-7068.750Heterocephalus_glaber_female
ENSCVAG00000003152pabpn18680.583ENSHGLG00000002927-9191.034Heterocephalus_glaber_female
ENSCVAG00000003152pabpn17168.966ENSHGLG00100018935-9467.836Heterocephalus_glaber_male
ENSCVAG00000003152pabpn18769.231ENSHGLG00100015565-8761.446Heterocephalus_glaber_male
ENSCVAG00000003152pabpn19470.136ENSHGLG00100006673-9191.034Heterocephalus_glaber_male
ENSCVAG00000003152pabpn110089.270ENSHCOG00000004655pabpn110087.983Hippocampus_comes
ENSCVAG00000003152pabpn110093.590ENSIPUG00000008085PABPN110092.308Ictalurus_punctatus
ENSCVAG00000003152pabpn110085.897ENSIPUG00000000180-9984.188Ictalurus_punctatus
ENSCVAG00000003152pabpn17180.357ENSSTOG00000029847BCL2L2-PABPN19477.976Ictidomys_tridecemlineatus
ENSCVAG00000003152pabpn17180.357ENSJJAG00000023507Gm205219477.976Jaculus_jaculus
ENSCVAG00000003152pabpn110094.043ENSKMAG00000018748pabpn110092.340Kryptolebias_marmoratus
ENSCVAG00000003152pabpn110095.299ENSLBEG00000027266pabpn110094.017Labrus_bergylta
ENSCVAG00000003152pabpn17684.916ENSLACG00000000646pabpn19274.884Latimeria_chalumnae
ENSCVAG00000003152pabpn19065.421ENSLOCG00000004694pabpn1l9962.617Lepisosteus_oculatus
ENSCVAG00000003152pabpn110087.458ENSLOCG00000000796pabpn110086.780Lepisosteus_oculatus
ENSCVAG00000003152pabpn16580.795ENSLAFG00000031227-9978.146Loxodonta_africana
ENSCVAG00000003152pabpn19971.245ENSMFAG00000032183BCL2L2-PABPN19477.976Macaca_fascicularis
ENSCVAG00000003152pabpn16173.427ENSMFAG00000031355-9971.127Macaca_fascicularis
ENSCVAG00000003152pabpn18667.476ENSMMUG00000048382-6965.550Macaca_mulatta
ENSCVAG00000003152pabpn19971.245ENSMMUG00000014747BCL2L2-PABPN110077.551Macaca_mulatta
ENSCVAG00000003152pabpn19974.678ENSMNEG00000045065BCL2L2-PABPN18473.391Macaca_nemestrina
ENSCVAG00000003152pabpn17968.085ENSMNEG00000035750-9971.127Macaca_nemestrina
ENSCVAG00000003152pabpn19971.245ENSMLEG00000043862BCL2L2-PABPN19477.976Mandrillus_leucophaeus
ENSCVAG00000003152pabpn17265.476ENSMLEG00000034623-9969.014Mandrillus_leucophaeus
ENSCVAG00000003152pabpn110094.898ENSMAMG00000007979pabpn110093.878Mastacembelus_armatus
ENSCVAG00000003152pabpn110093.878ENSMZEG00005011904pabpn110091.837Maylandia_zebra
ENSCVAG00000003152pabpn19971.245ENSMAUG00000007383Gm205218767.939Mesocricetus_auratus
ENSCVAG00000003152pabpn19975.214ENSMICG00000010002BCL2L2-PABPN18474.153Microcebus_murinus
ENSCVAG00000003152pabpn19971.245ENSMOCG00000018557Gm205218891.034Microtus_ochrogaster
ENSCVAG00000003152pabpn110094.872ENSMMOG00000005405pabpn110093.590Mola_mola
ENSCVAG00000003152pabpn18580.296ENSMODG00000004535-8666.794Monodelphis_domestica
ENSCVAG00000003152pabpn110095.238ENSMALG00000019612pabpn110094.218Monopterus_albus
ENSCVAG00000003152pabpn19970.815MGP_CAROLIEiJ_G0019276Gm205217069.099Mus_caroli
ENSCVAG00000003152pabpn18680.097MGP_CAROLIEiJ_G0019277Pabpn18891.034Mus_caroli
ENSCVAG00000003152pabpn19971.245ENSMUSG00000092232Gm205217069.528Mus_musculus
ENSCVAG00000003152pabpn18680.583ENSMUSG00000022194Pabpn18891.034Mus_musculus
ENSCVAG00000003152pabpn19971.245MGP_PahariEiJ_G0030294Gm205217069.528Mus_pahari
ENSCVAG00000003152pabpn18680.583MGP_PahariEiJ_G0030295Pabpn110095.238Mus_pahari
ENSCVAG00000003152pabpn18680.583MGP_SPRETEiJ_G0020166Pabpn18891.034Mus_spretus
ENSCVAG00000003152pabpn19971.245MGP_SPRETEiJ_G0020165Gm205217069.528Mus_spretus
ENSCVAG00000003152pabpn16680.128ENSMPUG00000006775-8878.523Mustela_putorius_furo
ENSCVAG00000003152pabpn18877.251ENSMLUG00000012452-6975.355Myotis_lucifugus
ENSCVAG00000003152pabpn18181.579ENSMLUG00000003800-10079.474Myotis_lucifugus
ENSCVAG00000003152pabpn18479.798ENSMLUG00000028677-8570.339Myotis_lucifugus
ENSCVAG00000003152pabpn19971.674ENSNGAG00000019529Gm205217069.957Nannospalax_galili
ENSCVAG00000003152pabpn110093.537ENSNBRG00000023955pabpn110091.497Neolamprologus_brichardi
ENSCVAG00000003152pabpn19971.245ENSNLEG00000015007-7478.947Nomascus_leucogenys
ENSCVAG00000003152pabpn18668.447ENSNLEG00000030598-7768.421Nomascus_leucogenys
ENSCVAG00000003152pabpn16459.060ENSNLEG00000035292-9958.389Nomascus_leucogenys
ENSCVAG00000003152pabpn18673.039ENSODEG00000003739-8762.205Octodon_degus
ENSCVAG00000003152pabpn17670.950ENSODEG00000011555-8969.643Octodon_degus
ENSCVAG00000003152pabpn19970.815ENSODEG00000002083BCL2L2-PABPN16878.469Octodon_degus
ENSCVAG00000003152pabpn110093.537ENSONIG00000008112pabpn110091.497Oreochromis_niloticus
ENSCVAG00000003152pabpn16382.993ENSOANG00000009218-10078.912Ornithorhynchus_anatinus
ENSCVAG00000003152pabpn18680.583ENSOCUG00000016174PABPN19567.681Oryctolagus_cuniculus
ENSCVAG00000003152pabpn110094.898ENSORLG00000027900pabpn110093.878Oryzias_latipes
ENSCVAG00000003152pabpn110094.898ENSORLG00020004681pabpn110093.878Oryzias_latipes_hni
ENSCVAG00000003152pabpn110094.898ENSORLG00015000018pabpn110093.878Oryzias_latipes_hsok
ENSCVAG00000003152pabpn110093.878ENSOMEG00000016618pabpn110093.878Oryzias_melastigma
ENSCVAG00000003152pabpn18681.068ENSOGAG00000008710PABPN18667.803Otolemur_garnettii
ENSCVAG00000003152pabpn19971.245ENSOARG00000019336BCL2L2-PABPN16469.528Ovis_aries
ENSCVAG00000003152pabpn19971.245ENSPPAG00000028984BCL2L2-PABPN18878.523Pan_paniscus
ENSCVAG00000003152pabpn17165.663ENSPPAG00000039421-9364.458Pan_paniscus
ENSCVAG00000003152pabpn18681.068ENSPPRG00000010567PABPN18667.803Panthera_pardus
ENSCVAG00000003152pabpn17180.357ENSPTIG00000001063BCL2L2-PABPN19477.976Panthera_tigris_altaica
ENSCVAG00000003152pabpn110061.966ENSPTRG00000047273-9358.730Pan_troglodytes
ENSCVAG00000003152pabpn19974.678ENSPTRG00000006167BCL2L28473.391Pan_troglodytes
ENSCVAG00000003152pabpn19974.678ENSPANG00000021100BCL2L2-PABPN18473.391Papio_anubis
ENSCVAG00000003152pabpn18468.844ENSPANG00000023326-9971.127Papio_anubis
ENSCVAG00000003152pabpn16970.807ENSPKIG00000008340pabpn1l7471.812Paramormyrops_kingsleyae
ENSCVAG00000003152pabpn110088.841ENSPKIG00000018052pabpn110088.034Paramormyrops_kingsleyae
ENSCVAG00000003152pabpn110092.177ENSPKIG00000008144-10091.156Paramormyrops_kingsleyae
ENSCVAG00000003152pabpn15280.328ENSPSIG00000011959-7885.047Pelodiscus_sinensis
ENSCVAG00000003152pabpn19595.946ENSPMGG00000022027pabpn110086.395Periophthalmus_magnuspinnatus
ENSCVAG00000003152pabpn19971.245ENSPEMG00000008332Gm205218891.034Peromyscus_maniculatus_bairdii
ENSCVAG00000003152pabpn17975.269ENSPMAG00000006212pabpn19969.295Petromyzon_marinus
ENSCVAG00000003152pabpn18681.068ENSPCIG00000027751-8667.424Phascolarctos_cinereus
ENSCVAG00000003152pabpn110097.619ENSPFOG00000010351pabpn110097.619Poecilia_formosa
ENSCVAG00000003152pabpn110097.619ENSPLAG00000022696pabpn110097.619Poecilia_latipinna
ENSCVAG00000003152pabpn110097.009ENSPMEG00000020856pabpn110097.009Poecilia_mexicana
ENSCVAG00000003152pabpn110097.436ENSPREG00000011278pabpn110097.436Poecilia_reticulata
ENSCVAG00000003152pabpn18180.928ENSPPYG00000005663PABPN18767.073Pongo_abelii
ENSCVAG00000003152pabpn18166.667ENSPCAG00000005902PABPN18256.557Procavia_capensis
ENSCVAG00000003152pabpn19975.214ENSPCOG00000028047BCL2L2-PABPN18474.153Propithecus_coquereli
ENSCVAG00000003152pabpn18878.947ENSPVAG00000005270PABPN18565.517Pteropus_vampyrus
ENSCVAG00000003152pabpn110094.444ENSPNYG00000013182pabpn110093.162Pundamilia_nyererei
ENSCVAG00000003152pabpn110094.017ENSPNAG00000023526pabpn110092.735Pygocentrus_nattereri
ENSCVAG00000003152pabpn18859.903ENSPNAG00000021666pabpn1l7871.069Pygocentrus_nattereri
ENSCVAG00000003152pabpn18680.583ENSRNOG00000042195Pabpn18567.939Rattus_norvegicus
ENSCVAG00000003152pabpn19470.588ENSRBIG00000040762BCL2L2-PABPN16669.159Rhinopithecus_bieti
ENSCVAG00000003152pabpn18970.892ENSRBIG00000039547-8263.839Rhinopithecus_bieti
ENSCVAG00000003152pabpn18869.378ENSRBIG00000042811-9563.877Rhinopithecus_bieti
ENSCVAG00000003152pabpn19470.588ENSRROG00000045535BCL2L2-PABPN19477.976Rhinopithecus_roxellana
ENSCVAG00000003152pabpn18866.029ENSRROG00000036409-7061.233Rhinopithecus_roxellana
ENSCVAG00000003152pabpn19466.222ENSRROG00000040409-8264.286Rhinopithecus_roxellana
ENSCVAG00000003152pabpn19967.480ENSSBOG00000026930BCL2L2-PABPN18878.523Saimiri_boliviensis_boliviensis
ENSCVAG00000003152pabpn19961.667ENSSHAG00000007707-9959.664Sarcophilus_harrisii
ENSCVAG00000003152pabpn18182.632ENSSHAG00000014841-8780.000Sarcophilus_harrisii
ENSCVAG00000003152pabpn110086.383ENSSFOG00015012565pabpn110085.106Scleropages_formosus
ENSCVAG00000003152pabpn110093.590ENSSFOG00015014718pabpn110091.880Scleropages_formosus
ENSCVAG00000003152pabpn16173.944ENSSFOG00015015833pabpn1l6774.306Scleropages_formosus
ENSCVAG00000003152pabpn110094.872ENSSMAG00000020157pabpn110094.218Scophthalmus_maximus
ENSCVAG00000003152pabpn110095.578ENSSDUG00000020582pabpn110094.558Seriola_dumerili
ENSCVAG00000003152pabpn110095.299ENSSLDG00000007118pabpn110094.017Seriola_lalandi_dorsalis
ENSCVAG00000003152pabpn17184.524ENSSPUG00000018308-9481.548Sphenodon_punctatus
ENSCVAG00000003152pabpn110094.043ENSSPAG00000021658pabpn110093.590Stegastes_partitus
ENSCVAG00000003152pabpn19261.290ENSSSCG00000034805-7956.872Sus_scrofa
ENSCVAG00000003152pabpn19971.245ENSSSCG00000002023PABPN18667.803Sus_scrofa
ENSCVAG00000003152pabpn17546.893ENSSSCG00000038472-6667.021Sus_scrofa
ENSCVAG00000003152pabpn110093.590ENSTRUG00000023664pabpn110092.308Takifugu_rubripes
ENSCVAG00000003152pabpn19290.323ENSTNIG00000005369pabpn19193.401Tetraodon_nigroviridis
ENSCVAG00000003152pabpn18681.068ENSUAMG00000024460PABPN16878.947Ursus_americanus
ENSCVAG00000003152pabpn19971.245ENSUMAG00000014288BCL2L2-PABPN17069.528Ursus_maritimus
ENSCVAG00000003152pabpn19971.245ENSVVUG00000019912BCL2L2-PABPN17679.381Vulpes_vulpes
ENSCVAG00000003152pabpn18482.741ENSXETG00000014597pabpn17380.184Xenopus_tropicalis
ENSCVAG00000003152pabpn17584.000ENSXCOG00000005158pabpn19094.771Xiphophorus_couchianus
ENSCVAG00000003152pabpn110097.619ENSXMAG00000006196pabpn110097.619Xiphophorus_maculatus

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