EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000003244 (Gene tree)
Gene ID: 107087812
Gene Symbol: tomm20a
Alias: arid4b|ch1073-321c8.1|wu:fk47b11
Full Name: AT-rich interaction domain 4B
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 74338 bases
Position: chrKL652695.1:918164-992501
Accession: 107087812
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000002162	Tudor-knot	PF11717.8	3.6e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000012188	-	7563	-	ENSCVAP00000002156	1229 (aa)	-	-
ENSCVAT00000012169	-	7746	XM_015379577	ENSCVAP00000002162	1290 (aa)	XP_015235063	UPI000742A292

Gene Model

Click here to download ENSCVAG00000003244's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000003244's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000003244	tomm20a	100	84.174	ENSAPOG00000010823	tomm20a	100	83.333	Acanthochromis_polyacanthus
ENSCVAG00000003244	tomm20a	96	84.430	ENSACIG00000006313	tomm20a	100	89.835	Amphilophus_citrinellus
ENSCVAG00000003244	tomm20a	100	83.563	ENSAOCG00000003330	tomm20a	100	82.798	Amphiprion_ocellaris
ENSCVAG00000003244	tomm20a	100	83.639	ENSAPEG00000024018	tomm20a	100	82.875	Amphiprion_percula
ENSCVAG00000003244	tomm20a	100	82.034	ENSATEG00000014930	tomm20a	100	82.339	Anabas_testudineus
ENSCVAG00000003244	tomm20a	100	50.318	ENSAPLG00000004422	ARID4B	54	58.152	Anas_platyrhynchos
ENSCVAG00000003244	tomm20a	52	61.748	ENSACAG00000001289	ARID4B	96	51.161	Anolis_carolinensis
ENSCVAG00000003244	tomm20a	54	61.050	ENSANAG00000038088	ARID4B	54	60.839	Aotus_nancymaae
ENSCVAG00000003244	tomm20a	96	75.991	ENSACLG00000023521	tomm20a	100	78.860	Astatotilapia_calliptera
ENSCVAG00000003244	tomm20a	83	76.998	ENSAMXG00000003657	tomm20a	90	76.145	Astyanax_mexicanus
ENSCVAG00000003244	tomm20a	100	52.758	ENSBTAG00000000222	ARID4B	54	61.958	Bos_taurus
ENSCVAG00000003244	tomm20a	54	61.560	ENSCJAG00000018055	ARID4B	62	61.236	Callithrix_jacchus
ENSCVAG00000003244	tomm20a	99	51.471	ENSCPOG00000034766	ARID4B	55	61.150	Cavia_porcellus
ENSCVAG00000003244	tomm20a	54	60.331	ENSCCAG00000021520	ARID4B	54	60.112	Cebus_capucinus
ENSCVAG00000003244	tomm20a	54	59.811	ENSCATG00000042166	ARID4B	54	60.839	Cercocebus_atys
ENSCVAG00000003244	tomm20a	54	58.310	ENSCANG00000027498	ARID4B	52	57.682	Colobus_angolensis_palliatus
ENSCVAG00000003244	tomm20a	99	77.294	ENSCSEG00000012928	tomm20a	98	77.821	Cynoglossus_semilaevis
ENSCVAG00000003244	tomm20a	100	64.809	ENSDARG00000090656	tomm20a	99	64.706	Danio_rerio
ENSCVAG00000003244	tomm20a	99	51.606	ENSDORG00000006422	Arid4b	54	60.986	Dipodomys_ordii
ENSCVAG00000003244	tomm20a	90	57.412	ENSETEG00000005596	ARID4B	90	56.941	Echinops_telfairi
ENSCVAG00000003244	tomm20a	68	54.676	ENSELUG00000018441	tomm20a	89	53.947	Esox_lucius
ENSCVAG00000003244	tomm20a	54	60.370	ENSFALG00000013548	ARID4B	53	61.878	Ficedula_albicollis
ENSCVAG00000003244	tomm20a	100	87.902	ENSFHEG00000003798	tomm20a	100	87.060	Fundulus_heteroclitus
ENSCVAG00000003244	tomm20a	90	71.542	ENSGMOG00000018747	tomm20a	91	70.120	Gadus_morhua
ENSCVAG00000003244	tomm20a	99	74.962	ENSGACG00000004298	tomm20a	100	74.203	Gasterosteus_aculeatus
ENSCVAG00000003244	tomm20a	54	59.722	ENSGAGG00000020544	ARID4B	52	60.224	Gopherus_agassizii
ENSCVAG00000003244	tomm20a	100	80.737	ENSHBUG00000020369	tomm20a	100	80.507	Haplochromis_burtoni
ENSCVAG00000003244	tomm20a	100	52.180	ENSHGLG00000012546	ARID4B	54	61.538	Heterocephalus_glaber_female
ENSCVAG00000003244	tomm20a	100	52.180	ENSHGLG00100015436	ARID4B	54	61.538	Heterocephalus_glaber_male
ENSCVAG00000003244	tomm20a	94	82.237	ENSHCOG00000010376	tomm20a	100	81.360	Hippocampus_comes
ENSCVAG00000003244	tomm20a	100	63.476	ENSIPUG00000014234	arid4b	96	62.279	Ictalurus_punctatus
ENSCVAG00000003244	tomm20a	95	74.433	ENSKMAG00000010987	tomm20a	98	75.110	Kryptolebias_marmoratus
ENSCVAG00000003244	tomm20a	100	60.121	ENSLOCG00000015899	tomm20a	95	59.968	Lepisosteus_oculatus
ENSCVAG00000003244	tomm20a	53	60.719	ENSLAFG00000014295	ARID4B	54	61.322	Loxodonta_africana
ENSCVAG00000003244	tomm20a	93	81.322	ENSMAMG00000017134	tomm20a	99	81.488	Mastacembelus_armatus
ENSCVAG00000003244	tomm20a	100	80.583	ENSMZEG00005009879	tomm20a	100	80.353	Maylandia_zebra
ENSCVAG00000003244	tomm20a	100	50.749	ENSMGAG00000011896	ARID4B	54	60.996	Meleagris_gallopavo
ENSCVAG00000003244	tomm20a	99	51.375	ENSMICG00000016358	ARID4B	54	60.694	Microcebus_murinus
ENSCVAG00000003244	tomm20a	93	85.463	ENSMMOG00000000561	tomm20a	98	84.802	Mola_mola
ENSCVAG00000003244	tomm20a	100	81.658	ENSMALG00000005205	tomm20a	100	82.655	Monopterus_albus
ENSCVAG00000003244	tomm20a	100	51.420	MGP_SPRETEiJ_G0019094	Arid4b	96	50.648	Mus_spretus
ENSCVAG00000003244	tomm20a	96	82.276	ENSNBRG00000019684	tomm20a	100	89.623	Neolamprologus_brichardi
ENSCVAG00000003244	tomm20a	100	51.652	ENSODEG00000005373	ARID4B	54	61.367	Octodon_degus
ENSCVAG00000003244	tomm20a	100	76.835	ENSORLG00000012510	tomm20a	100	76.169	Oryzias_latipes
ENSCVAG00000003244	tomm20a	91	84.450	ENSORLG00020013988	tomm20a	100	84.906	Oryzias_latipes_hni
ENSCVAG00000003244	tomm20a	91	84.856	ENSORLG00015022835	tomm20a	100	84.834	Oryzias_latipes_hsok
ENSCVAG00000003244	tomm20a	100	78.851	ENSOMEG00000000521	tomm20a	100	77.778	Oryzias_melastigma
ENSCVAG00000003244	tomm20a	99	52.833	ENSOARG00000003481	ARID4B	94	51.442	Ovis_aries
ENSCVAG00000003244	tomm20a	100	51.408	ENSPPRG00000013739	ARID4B	54	61.304	Panthera_pardus
ENSCVAG00000003244	tomm20a	100	52.126	ENSPTIG00000012520	ARID4B	55	61.496	Panthera_tigris_altaica
ENSCVAG00000003244	tomm20a	91	73.210	ENSPCIG00000029756	ARID4B	54	61.441	Phascolarctos_cinereus
ENSCVAG00000003244	tomm20a	100	87.443	ENSPFOG00000019430	tomm20a	100	87.825	Poecilia_formosa
ENSCVAG00000003244	tomm20a	100	87.213	ENSPLAG00000010554	tomm20a	100	87.395	Poecilia_latipinna
ENSCVAG00000003244	tomm20a	100	84.858	ENSPMEG00000003093	tomm20a	100	82.748	Poecilia_mexicana
ENSCVAG00000003244	tomm20a	100	88.163	ENSPREG00000007996	tomm20a	100	88.624	Poecilia_reticulata
ENSCVAG00000003244	tomm20a	92	54.930	ENSPVAG00000015159	ARID4B	84	61.613	Pteropus_vampyrus
ENSCVAG00000003244	tomm20a	99	75.212	ENSPNYG00000013988	tomm20a	100	75.597	Pundamilia_nyererei
ENSCVAG00000003244	tomm20a	100	66.768	ENSPNAG00000000523	tomm20a	92	66.154	Pygocentrus_nattereri
ENSCVAG00000003244	tomm20a	99	46.812	ENSRBIG00000042029	ARID4B	55	59.065	Rhinopithecus_bieti
ENSCVAG00000003244	tomm20a	100	51.587	ENSRROG00000045203	ARID4B	54	60.979	Rhinopithecus_roxellana
ENSCVAG00000003244	tomm20a	54	60.705	ENSSHAG00000015214	ARID4B	93	52.521	Sarcophilus_harrisii
ENSCVAG00000003244	tomm20a	75	50.449	ENSSFOG00015008923	tomm20a	94	49.680	Scleropages_formosus
ENSCVAG00000003244	tomm20a	100	60.152	ENSSFOG00015000132	arid4b	95	59.571	Scleropages_formosus
ENSCVAG00000003244	tomm20a	100	78.770	ENSSMAG00000010430	tomm20a	100	79.054	Scophthalmus_maximus
ENSCVAG00000003244	tomm20a	100	83.985	ENSSDUG00000003019	tomm20a	100	83.142	Seriola_dumerili
ENSCVAG00000003244	tomm20a	100	83.321	ENSSPAG00000007358	tomm20a	100	82.555	Stegastes_partitus
ENSCVAG00000003244	tomm20a	69	68.207	ENSTRUG00000002893	tomm20a	100	66.887	Takifugu_rubripes
ENSCVAG00000003244	tomm20a	70	66.276	ENSTBEG00000003961	ARID4B	63	67.813	Tupaia_belangeri
ENSCVAG00000003244	tomm20a	100	49.558	ENSXETG00000024651	arid4b	55	57.762	Xenopus_tropicalis
ENSCVAG00000003244	tomm20a	100	87.886	ENSXMAG00000006538	tomm20a	100	88.735	Xiphophorus_maculatus