EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000003513 (Gene tree)
Gene ID: 107095214
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 21792 bases
Position: chrKL653029.1:501057-522848
Accession: 107095214
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000021456	MMR_HSR1	PF01926.23	1.4e-08	1	1
ENSCVAP00000002398	MMR_HSR1	PF01926.23	1.5e-08	1	1
ENSCVAP00000002389	MMR_HSR1	PF01926.23	1.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000011789	-	1389	-	ENSCVAP00000002398	462 (aa)	-	-
ENSCVAT00000011780	-	3963	XM_015391213	ENSCVAP00000002389	470 (aa)	XP_015246699	UPI000742BE43
ENSCVAT00000011770	-	3999	XM_015391212	ENSCVAP00000021456	482 (aa)	XP_015246698	UPI000742B40A

Gene Model

Click here to download ENSCVAG00000003513's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000003513's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000003513	srl	96	76.991	ENSCVAG00000022465	SRL	61	76.087
ENSCVAG00000003513	srl	90	32.464	ENSCVAG00000006962	ehd4	75	32.464
ENSCVAG00000003513	srl	81	34.048	ENSCVAG00000016197	ehd3	69	34.026
ENSCVAG00000003513	srl	91	33.568	ENSCVAG00000002381	ehd2b	76	33.568
ENSCVAG00000003513	srl	84	32.308	ENSCVAG00000012152	ehd1a	70	32.308
ENSCVAG00000003513	srl	87	31.442	ENSCVAG00000018998	-	70	32.658

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000003513	srl	96	83.937	ENSG00000185739	SRL	99	84.186	Homo_sapiens
ENSCVAG00000003513	srl	100	94.480	ENSAPOG00000018093	srl	100	94.480	Acanthochromis_polyacanthus
ENSCVAG00000003513	srl	96	77.828	ENSAPOG00000012432	SRL	98	77.828	Acanthochromis_polyacanthus
ENSCVAG00000003513	srl	98	81.441	ENSAMEG00000010862	SRL	51	82.522	Ailuropoda_melanoleuca
ENSCVAG00000003513	srl	97	76.339	ENSACIG00000015419	SRL	99	76.339	Amphilophus_citrinellus
ENSCVAG00000003513	srl	97	94.866	ENSACIG00000015799	srl	99	94.866	Amphilophus_citrinellus
ENSCVAG00000003513	srl	94	95.622	ENSAOCG00000007574	srl	100	95.622	Amphiprion_ocellaris
ENSCVAG00000003513	srl	96	77.928	ENSAOCG00000017049	SRL	97	78.153	Amphiprion_ocellaris
ENSCVAG00000003513	srl	96	74.041	ENSAPEG00000006533	SRL	96	75.000	Amphiprion_percula
ENSCVAG00000003513	srl	100	94.824	ENSAPEG00000006911	srl	100	94.824	Amphiprion_percula
ENSCVAG00000003513	srl	100	94.824	ENSATEG00000024315	srl	100	93.789	Anabas_testudineus
ENSCVAG00000003513	srl	96	76.316	ENSATEG00000009643	SRL	52	76.535	Anabas_testudineus
ENSCVAG00000003513	srl	100	81.352	ENSACAG00000016380	SRL	89	81.352	Anolis_carolinensis
ENSCVAG00000003513	srl	97	74.837	ENSACLG00000024674	SRL	58	74.730	Astatotilapia_calliptera
ENSCVAG00000003513	srl	100	94.410	ENSACLG00000027685	srl	100	92.946	Astatotilapia_calliptera
ENSCVAG00000003513	srl	91	78.571	ENSAMXG00000038693	SRL	100	74.614	Astyanax_mexicanus
ENSCVAG00000003513	srl	100	90.249	ENSAMXG00000018789	srl	92	90.249	Astyanax_mexicanus
ENSCVAG00000003513	srl	95	84.127	ENSBTAG00000001078	SRL	56	84.127	Bos_taurus
ENSCVAG00000003513	srl	96	83.937	ENSCJAG00000019750	SRL	93	83.937	Callithrix_jacchus
ENSCVAG00000003513	srl	100	80.300	ENSCAFG00000019233	SRL	86	81.522	Canis_familiaris
ENSCVAG00000003513	srl	97	82.561	ENSCAFG00020025024	SRL	56	82.561	Canis_lupus_dingo
ENSCVAG00000003513	srl	98	81.838	ENSCHIG00000017927	SRL	55	84.127	Capra_hircus
ENSCVAG00000003513	srl	100	80.761	ENSTSYG00000007919	SRL	99	84.884	Carlito_syrichta
ENSCVAG00000003513	srl	96	83.484	ENSCPOG00000012643	SRL	100	80.720	Cavia_porcellus
ENSCVAG00000003513	srl	96	78.507	ENSCCAG00000032646	SRL	100	85.488	Cebus_capucinus
ENSCVAG00000003513	srl	96	83.937	ENSCATG00000032227	-	93	83.937	Cercocebus_atys
ENSCVAG00000003513	srl	96	83.258	ENSCLAG00000016242	SRL	100	80.508	Chinchilla_lanigera
ENSCVAG00000003513	srl	83	87.013	ENSCHOG00000001618	SRL	52	87.013	Choloepus_hoffmanni
ENSCVAG00000003513	srl	99	86.788	ENSCPBG00000026371	SRL	98	82.316	Chrysemys_picta_bellii
ENSCVAG00000003513	srl	93	59.677	ENSCING00000005231	-	97	59.677	Ciona_intestinalis
ENSCVAG00000003513	srl	96	83.937	ENSCANG00000035872	SRL	99	84.186	Colobus_angolensis_palliatus
ENSCVAG00000003513	srl	96	84.163	ENSCGRG00001016630	Srl	100	81.144	Cricetulus_griseus_chok1gshd
ENSCVAG00000003513	srl	96	84.163	ENSCGRG00000005458	Srl	100	81.144	Cricetulus_griseus_crigri
ENSCVAG00000003513	srl	99	73.118	ENSCSEG00000011866	SRL	94	72.708	Cynoglossus_semilaevis
ENSCVAG00000003513	srl	100	94.043	ENSCSEG00000016151	srl	100	94.043	Cynoglossus_semilaevis
ENSCVAG00000003513	srl	100	91.097	ENSDARG00000104587	srl	100	90.249	Danio_rerio
ENSCVAG00000003513	srl	82	78.646	ENSDARG00000112959	CABZ01072309.1	100	78.646	Danio_rerio
ENSCVAG00000003513	srl	96	84.163	ENSDNOG00000011643	SRL	53	84.163	Dasypus_novemcinctus
ENSCVAG00000003513	srl	96	83.937	ENSDORG00000014807	Srl	100	81.144	Dipodomys_ordii
ENSCVAG00000003513	srl	80	65.957	ENSEBUG00000015937	srl	95	65.957	Eptatretus_burgeri
ENSCVAG00000003513	srl	95	84.354	ENSEASG00005000942	SRL	53	84.354	Equus_asinus_asinus
ENSCVAG00000003513	srl	99	81.356	ENSECAG00000024219	SRL	99	81.013	Equus_caballus
ENSCVAG00000003513	srl	100	87.269	ENSELUG00000015616	srl	100	87.269	Esox_lucius
ENSCVAG00000003513	srl	100	80.127	ENSFCAG00000022075	SRL	100	80.000	Felis_catus
ENSCVAG00000003513	srl	95	84.091	ENSFALG00000004328	SRL	63	84.091	Ficedula_albicollis
ENSCVAG00000003513	srl	96	84.163	ENSFDAG00000006199	SRL	100	81.568	Fukomys_damarensis
ENSCVAG00000003513	srl	100	73.760	ENSFHEG00000011854	SRL	98	77.828	Fundulus_heteroclitus
ENSCVAG00000003513	srl	100	97.095	ENSFHEG00000011239	srl	100	97.095	Fundulus_heteroclitus
ENSCVAG00000003513	srl	94	92.291	ENSGMOG00000014954	srl	100	92.291	Gadus_morhua
ENSCVAG00000003513	srl	99	81.034	ENSGALG00000038884	SRL	98	81.857	Gallus_gallus
ENSCVAG00000003513	srl	100	97.095	ENSGAFG00000000010	srl	100	97.095	Gambusia_affinis
ENSCVAG00000003513	srl	97	78.348	ENSGAFG00000016984	SRL	99	78.348	Gambusia_affinis
ENSCVAG00000003513	srl	94	94.714	ENSGACG00000011332	srl	99	94.714	Gasterosteus_aculeatus
ENSCVAG00000003513	srl	96	83.937	ENSGGOG00000011312	-	93	83.937	Gorilla_gorilla
ENSCVAG00000003513	srl	97	75.271	ENSHBUG00000015710	SRL	58	75.162	Haplochromis_burtoni
ENSCVAG00000003513	srl	100	94.410	ENSHBUG00000007581	srl	100	92.946	Haplochromis_burtoni
ENSCVAG00000003513	srl	96	84.389	ENSHGLG00000015271	SRL	100	81.568	Heterocephalus_glaber_female
ENSCVAG00000003513	srl	96	84.389	ENSHGLG00100019378	SRL	100	81.568	Heterocephalus_glaber_male
ENSCVAG00000003513	srl	100	93.856	ENSHCOG00000008687	srl	99	95.089	Hippocampus_comes
ENSCVAG00000003513	srl	96	74.505	ENSHCOG00000001012	SRL	50	74.505	Hippocampus_comes
ENSCVAG00000003513	srl	94	70.642	ENSIPUG00000011609	SRL	95	70.642	Ictalurus_punctatus
ENSCVAG00000003513	srl	100	90.890	ENSIPUG00000012513	srl	100	90.890	Ictalurus_punctatus
ENSCVAG00000003513	srl	96	83.937	ENSSTOG00000021151	-	100	80.932	Ictidomys_tridecemlineatus
ENSCVAG00000003513	srl	100	81.568	ENSJJAG00000016400	Srl	100	81.568	Jaculus_jaculus
ENSCVAG00000003513	srl	98	95.339	ENSKMAG00000014115	srl	95	95.339	Kryptolebias_marmoratus
ENSCVAG00000003513	srl	95	77.778	ENSKMAG00000019537	SRL	100	77.778	Kryptolebias_marmoratus
ENSCVAG00000003513	srl	100	93.631	ENSLBEG00000026643	srl	100	93.631	Labrus_bergylta
ENSCVAG00000003513	srl	95	76.244	ENSLBEG00000013811	SRL	95	76.471	Labrus_bergylta
ENSCVAG00000003513	srl	100	82.816	ENSLACG00000002825	SRL	100	84.292	Latimeria_chalumnae
ENSCVAG00000003513	srl	99	87.580	ENSLOCG00000002644	srl	96	89.579	Lepisosteus_oculatus
ENSCVAG00000003513	srl	98	81.619	ENSLAFG00000006329	SRL	52	81.619	Loxodonta_africana
ENSCVAG00000003513	srl	93	84.186	ENSMFAG00000037383	SRL	99	84.186	Macaca_fascicularis
ENSCVAG00000003513	srl	99	81.699	ENSMNEG00000019236	-	97	81.699	Macaca_nemestrina
ENSCVAG00000003513	srl	96	76.923	ENSMLEG00000032156	SRL	93	76.923	Mandrillus_leucophaeus
ENSCVAG00000003513	srl	95	75.991	ENSMAMG00000013756	SRL	53	75.991	Mastacembelus_armatus
ENSCVAG00000003513	srl	99	92.408	ENSMAMG00000023322	srl	96	94.667	Mastacembelus_armatus
ENSCVAG00000003513	srl	97	75.054	ENSMZEG00005004010	SRL	58	75.054	Maylandia_zebra
ENSCVAG00000003513	srl	100	94.410	ENSMZEG00005004548	srl	100	92.946	Maylandia_zebra
ENSCVAG00000003513	srl	95	84.318	ENSMGAG00000009342	SRL	92	86.849	Meleagris_gallopavo
ENSCVAG00000003513	srl	96	83.973	ENSMICG00000032307	SRL	100	80.761	Microcebus_murinus
ENSCVAG00000003513	srl	100	80.297	ENSMOCG00000008208	Srl	100	80.297	Microtus_ochrogaster
ENSCVAG00000003513	srl	97	92.857	ENSMMOG00000013970	srl	100	92.667	Mola_mola
ENSCVAG00000003513	srl	95	74.505	ENSMMOG00000021572	SRL	99	74.725	Mola_mola
ENSCVAG00000003513	srl	95	85.034	ENSMODG00000016380	-	50	85.034	Monodelphis_domestica
ENSCVAG00000003513	srl	91	77.857	ENSMALG00000000670	SRL	98	77.857	Monopterus_albus
ENSCVAG00000003513	srl	100	93.617	ENSMALG00000005039	srl	100	93.617	Monopterus_albus
ENSCVAG00000003513	srl	96	84.615	MGP_CAROLIEiJ_G0020400	Srl	100	82.203	Mus_caroli
ENSCVAG00000003513	srl	96	84.615	ENSMUSG00000022519	Srl	100	82.203	Mus_musculus
ENSCVAG00000003513	srl	96	84.615	MGP_SPRETEiJ_G0021294	Srl	100	82.203	Mus_spretus
ENSCVAG00000003513	srl	96	83.710	ENSMPUG00000015025	SRL	54	83.710	Mustela_putorius_furo
ENSCVAG00000003513	srl	99	82.353	ENSMLUG00000030733	SRL	56	84.615	Myotis_lucifugus
ENSCVAG00000003513	srl	96	84.389	ENSNGAG00000019741	Srl	100	81.568	Nannospalax_galili
ENSCVAG00000003513	srl	97	74.403	ENSNBRG00000002422	SRL	58	74.298	Neolamprologus_brichardi
ENSCVAG00000003513	srl	100	94.480	ENSNBRG00000023775	srl	100	92.979	Neolamprologus_brichardi
ENSCVAG00000003513	srl	96	78.281	ENSNLEG00000029051	SRL	93	78.281	Nomascus_leucogenys
ENSCVAG00000003513	srl	98	75.870	ENSOPRG00000000477	-	52	78.054	Ochotona_princeps
ENSCVAG00000003513	srl	96	83.710	ENSODEG00000013256	SRL	100	80.720	Octodon_degus
ENSCVAG00000003513	srl	100	94.410	ENSONIG00000005192	srl	100	92.946	Oreochromis_niloticus
ENSCVAG00000003513	srl	96	76.018	ENSORLG00000015064	SRL	97	76.018	Oryzias_latipes
ENSCVAG00000003513	srl	100	95.021	ENSORLG00000008291	srl	97	95.021	Oryzias_latipes
ENSCVAG00000003513	srl	96	76.244	ENSORLG00020018173	SRL	97	76.244	Oryzias_latipes_hni
ENSCVAG00000003513	srl	100	94.813	ENSORLG00020019784	srl	85	94.813	Oryzias_latipes_hni
ENSCVAG00000003513	srl	96	76.244	ENSORLG00015019063	SRL	97	76.244	Oryzias_latipes_hsok
ENSCVAG00000003513	srl	100	94.398	ENSORLG00015009342	srl	97	94.398	Oryzias_latipes_hsok
ENSCVAG00000003513	srl	96	74.286	ENSOMEG00000005682	SRL	53	74.725	Oryzias_melastigma
ENSCVAG00000003513	srl	100	94.813	ENSOMEG00000010006	srl	100	94.813	Oryzias_melastigma
ENSCVAG00000003513	srl	96	83.521	ENSOGAG00000029266	SRL	54	83.521	Otolemur_garnettii
ENSCVAG00000003513	srl	98	81.838	ENSOARG00000003074	SRL	55	84.127	Ovis_aries
ENSCVAG00000003513	srl	96	83.937	ENSPPAG00000024919	-	99	84.186	Pan_paniscus
ENSCVAG00000003513	srl	100	80.127	ENSPPRG00000010274	SRL	99	83.721	Panthera_pardus
ENSCVAG00000003513	srl	100	80.127	ENSPTIG00000015162	SRL	99	83.721	Panthera_tigris_altaica
ENSCVAG00000003513	srl	96	83.937	ENSPTRG00000007712	SRL	99	84.186	Pan_troglodytes
ENSCVAG00000003513	srl	99	80.645	ENSPANG00000013804	SRL	100	80.645	Papio_anubis
ENSCVAG00000003513	srl	100	90.535	ENSPKIG00000006405	srl	100	90.103	Paramormyrops_kingsleyae
ENSCVAG00000003513	srl	100	78.556	ENSPKIG00000024974	SRL	94	78.344	Paramormyrops_kingsleyae
ENSCVAG00000003513	srl	98	81.878	ENSPSIG00000008586	SRL	53	80.042	Pelodiscus_sinensis
ENSCVAG00000003513	srl	96	75.566	ENSPMGG00000023505	-	99	75.566	Periophthalmus_magnuspinnatus
ENSCVAG00000003513	srl	96	95.701	ENSPMGG00000021081	srl	95	95.701	Periophthalmus_magnuspinnatus
ENSCVAG00000003513	srl	96	83.484	ENSPEMG00000015842	Srl	100	80.720	Peromyscus_maniculatus_bairdii
ENSCVAG00000003513	srl	91	67.202	ENSPMAG00000004786	srl	99	67.735	Petromyzon_marinus
ENSCVAG00000003513	srl	95	84.580	ENSPCIG00000012128	SRL	96	84.580	Phascolarctos_cinereus
ENSCVAG00000003513	srl	100	96.888	ENSPFOG00000011408	srl	95	97.180	Poecilia_formosa
ENSCVAG00000003513	srl	97	97.105	ENSPLAG00000008017	srl	98	97.111	Poecilia_latipinna
ENSCVAG00000003513	srl	97	76.667	ENSPLAG00000002932	SRL	99	76.667	Poecilia_latipinna
ENSCVAG00000003513	srl	100	96.809	ENSPMEG00000006745	srl	98	97.111	Poecilia_mexicana
ENSCVAG00000003513	srl	96	76.264	ENSPMEG00000005890	SRL	61	74.946	Poecilia_mexicana
ENSCVAG00000003513	srl	100	96.888	ENSPREG00000007751	srl	100	97.118	Poecilia_reticulata
ENSCVAG00000003513	srl	97	77.556	ENSPREG00000000315	SRL	99	77.556	Poecilia_reticulata
ENSCVAG00000003513	srl	91	85.476	ENSPPYG00000007053	SRL	98	85.476	Pongo_abelii
ENSCVAG00000003513	srl	95	84.807	ENSPCAG00000003378	-	50	84.807	Procavia_capensis
ENSCVAG00000003513	srl	96	84.199	ENSPCOG00000023135	SRL	99	84.884	Propithecus_coquereli
ENSCVAG00000003513	srl	96	84.389	ENSPVAG00000006586	SRL	54	84.389	Pteropus_vampyrus
ENSCVAG00000003513	srl	97	75.054	ENSPNYG00000003423	SRL	58	74.946	Pundamilia_nyererei
ENSCVAG00000003513	srl	100	94.203	ENSPNYG00000001200	srl	100	92.739	Pundamilia_nyererei
ENSCVAG00000003513	srl	95	76.644	ENSPNAG00000007361	-	91	76.644	Pygocentrus_nattereri
ENSCVAG00000003513	srl	100	89.834	ENSPNAG00000023106	srl	100	89.834	Pygocentrus_nattereri
ENSCVAG00000003513	srl	96	83.937	ENSSBOG00000029273	SRL	93	83.937	Saimiri_boliviensis_boliviensis
ENSCVAG00000003513	srl	96	78.054	ENSSFOG00015021327	SRL	50	77.455	Scleropages_formosus
ENSCVAG00000003513	srl	100	89.669	ENSSFOG00015009773	srl	100	89.669	Scleropages_formosus
ENSCVAG00000003513	srl	95	75.824	ENSSMAG00000002232	SRL	50	75.824	Scophthalmus_maximus
ENSCVAG00000003513	srl	100	92.781	ENSSMAG00000016274	srl	100	92.994	Scophthalmus_maximus
ENSCVAG00000003513	srl	96	96.388	ENSSDUG00000010808	srl	98	96.388	Seriola_dumerili
ENSCVAG00000003513	srl	96	78.000	ENSSDUG00000009161	SRL	99	78.000	Seriola_dumerili
ENSCVAG00000003513	srl	96	77.729	ENSSLDG00000014601	SRL	100	78.289	Seriola_lalandi_dorsalis
ENSCVAG00000003513	srl	100	95.021	ENSSLDG00000022024	srl	100	95.021	Seriola_lalandi_dorsalis
ENSCVAG00000003513	srl	95	84.163	ENSSPUG00000016859	SRL	97	84.163	Sphenodon_punctatus
ENSCVAG00000003513	srl	100	94.835	ENSSPAG00000019105	srl	100	94.835	Stegastes_partitus
ENSCVAG00000003513	srl	95	78.912	ENSSPAG00000014254	SRL	98	78.912	Stegastes_partitus
ENSCVAG00000003513	srl	97	82.379	ENSSSCG00000007949	SRL	98	83.900	Sus_scrofa
ENSCVAG00000003513	srl	78	86.740	ENSTGUG00000016121	-	100	86.740	Taeniopygia_guttata
ENSCVAG00000003513	srl	95	84.318	ENSTGUG00000003951	-	97	84.318	Taeniopygia_guttata
ENSCVAG00000003513	srl	100	94.255	ENSTRUG00000006005	srl	100	94.255	Takifugu_rubripes
ENSCVAG00000003513	srl	91	78.282	ENSTRUG00000013310	SRL	55	78.282	Takifugu_rubripes
ENSCVAG00000003513	srl	100	93.404	ENSTNIG00000009739	srl	100	93.404	Tetraodon_nigroviridis
ENSCVAG00000003513	srl	96	83.484	ENSUAMG00000005701	SRL	55	83.484	Ursus_americanus
ENSCVAG00000003513	srl	96	83.710	ENSUMAG00000002574	SRL	55	83.710	Ursus_maritimus
ENSCVAG00000003513	srl	97	82.561	ENSVVUG00000016331	-	50	82.561	Vulpes_vulpes
ENSCVAG00000003513	srl	97	82.222	ENSXETG00000017313	srl	100	82.040	Xenopus_tropicalis
ENSCVAG00000003513	srl	97	78.125	ENSXCOG00000014584	SRL	99	78.125	Xiphophorus_couchianus
ENSCVAG00000003513	srl	91	97.625	ENSXCOG00000010424	srl	97	97.625	Xiphophorus_couchianus
ENSCVAG00000003513	srl	100	97.095	ENSXMAG00000004625	srl	95	97.095	Xiphophorus_maculatus
ENSCVAG00000003513	srl	96	76.484	ENSXMAG00000027598	SRL	63	75.594	Xiphophorus_maculatus