EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000003539 (Gene tree)
Gene ID: 107089454
Gene Symbol: rab12
Alias: zgc:111945
Full Name: RAB12%2C member RAS oncogene family
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 12217 bases
Position: chrKL652753.1:1013349-1025565
Accession: 107089454
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000002434	MMR_HSR1	PF01926.23	5.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000011728	-	2959	XM_015382249	ENSCVAP00000002434	246 (aa)	XP_015237735	UPI000742B69B

Gene Model

Click here to download ENSCVAG00000003539's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000003539's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000003539	rab12	77	38.220	ENSCVAG00000004751	rab6bb	84	38.286
ENSCVAG00000003539	rab12	70	47.674	ENSCVAG00000018085	rab30	84	47.674
ENSCVAG00000003539	rab12	84	36.321	ENSCVAG00000022353	rab14	80	40.462
ENSCVAG00000003539	rab12	70	37.791	ENSCVAG00000009550	rab5c	76	37.791
ENSCVAG00000003539	rab12	67	41.916	ENSCVAG00000014915	RAB39B	78	41.916
ENSCVAG00000003539	rab12	83	33.810	ENSCVAG00000014038	RAB29	83	34.682
ENSCVAG00000003539	rab12	83	38.967	ENSCVAG00000013878	rab11a	95	38.967
ENSCVAG00000003539	rab12	83	38.426	ENSCVAG00000017021	-	75	43.636
ENSCVAG00000003539	rab12	67	30.000	ENSCVAG00000013135	rasl11a	68	30.000
ENSCVAG00000003539	rab12	80	40.306	ENSCVAG00000017623	rab2a	79	44.048
ENSCVAG00000003539	rab12	84	38.647	ENSCVAG00000012806	rab35b	89	43.646
ENSCVAG00000003539	rab12	66	33.333	ENSCVAG00000011432	rabl2	72	33.333
ENSCVAG00000003539	rab12	65	36.478	ENSCVAG00000018433	rab22a	81	36.478
ENSCVAG00000003539	rab12	67	42.262	ENSCVAG00000015862	-	78	42.262
ENSCVAG00000003539	rab12	83	37.559	ENSCVAG00000019718	-	75	43.636
ENSCVAG00000003539	rab12	81	36.500	ENSCVAG00000022249	rab6a	76	40.625
ENSCVAG00000003539	rab12	65	35.366	ENSCVAG00000018191	rab34a	61	35.366
ENSCVAG00000003539	rab12	66	43.558	ENSCVAG00000014416	-	77	43.558
ENSCVAG00000003539	rab12	70	51.163	ENSCVAG00000022649	-	86	51.163
ENSCVAG00000003539	rab12	64	40.994	ENSCVAG00000017064	si:dkey-34d22.5	72	40.994
ENSCVAG00000003539	rab12	73	42.458	ENSCVAG00000008276	RAB15	88	47.664
ENSCVAG00000003539	rab12	83	37.379	ENSCVAG00000020016	rab11al	76	43.030
ENSCVAG00000003539	rab12	70	41.860	ENSCVAG00000003537	si:dkey-16l2.16	81	41.860
ENSCVAG00000003539	rab12	60	36.842	ENSCVAG00000000862	-	75	34.254
ENSCVAG00000003539	rab12	74	39.247	ENSCVAG00000019227	zgc:101559	78	39.247
ENSCVAG00000003539	rab12	67	32.934	ENSCVAG00000004027	rheb	89	32.934
ENSCVAG00000003539	rab12	69	40.828	ENSCVAG00000010727	rab4a	79	40.828
ENSCVAG00000003539	rab12	63	31.210	ENSCVAG00000008389	si:ch73-116o1.2	80	31.548
ENSCVAG00000003539	rab12	76	37.895	ENSCVAG00000005429	-	81	37.278
ENSCVAG00000003539	rab12	83	38.424	ENSCVAG00000020003	rab25b	82	42.424
ENSCVAG00000003539	rab12	78	36.869	ENSCVAG00000011665	rab33a	59	40.854
ENSCVAG00000003539	rab12	65	39.623	ENSCVAG00000012889	rab6ba	84	37.143
ENSCVAG00000003539	rab12	67	35.119	ENSCVAG00000021826	rab9b	83	35.119
ENSCVAG00000003539	rab12	76	31.959	ENSCVAG00000020501	rab23	87	31.937
ENSCVAG00000003539	rab12	76	37.895	ENSCVAG00000000281	RAB7A	81	37.278
ENSCVAG00000003539	rab12	67	34.706	ENSCVAG00000001150	si:dkey-13a21.4	81	34.524
ENSCVAG00000003539	rab12	67	35.714	ENSCVAG00000016312	rab9a	78	35.714
ENSCVAG00000003539	rab12	83	37.864	ENSCVAG00000008126	-	95	37.864
ENSCVAG00000003539	rab12	71	50.000	ENSCVAG00000022585	-	84	50.000
ENSCVAG00000003539	rab12	65	38.994	ENSCVAG00000001618	rab41	73	39.744
ENSCVAG00000003539	rab12	73	37.989	ENSCVAG00000008239	rab5aa	81	37.989
ENSCVAG00000003539	rab12	77	47.090	ENSCVAG00000022799	-	83	50.888
ENSCVAG00000003539	rab12	70	45.930	ENSCVAG00000009222	zgc:171927	80	45.930
ENSCVAG00000003539	rab12	64	33.333	ENSCVAG00000001281	rhebl1	85	33.333
ENSCVAG00000003539	rab12	61	30.464	ENSCVAG00000006062	KRAS	85	30.864
ENSCVAG00000003539	rab12	83	38.426	ENSCVAG00000019751	-	75	43.030
ENSCVAG00000003539	rab12	66	48.171	ENSCVAG00000015451	rab18a	79	48.171
ENSCVAG00000003539	rab12	81	32.353	ENSCVAG00000002953	RAB9A	79	36.478

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000003539	rab12	100	77.912	ENSG00000206418	RAB12	91	87.444	Homo_sapiens
ENSCVAG00000003539	rab12	88	77.626	ENSAMEG00000007452	RAB12	94	81.279	Ailuropoda_melanoleuca
ENSCVAG00000003539	rab12	100	96.748	ENSACIG00000020616	rab12	100	96.748	Amphilophus_citrinellus
ENSCVAG00000003539	rab12	100	95.528	ENSAOCG00000002130	rab12	100	95.528	Amphiprion_ocellaris
ENSCVAG00000003539	rab12	100	95.528	ENSAPEG00000013255	rab12	100	95.528	Amphiprion_percula
ENSCVAG00000003539	rab12	100	95.528	ENSATEG00000019683	rab12	100	95.528	Anabas_testudineus
ENSCVAG00000003539	rab12	88	84.475	ENSACAG00000003360	RAB12	86	87.444	Anolis_carolinensis
ENSCVAG00000003539	rab12	100	97.154	ENSACLG00000007696	rab12	100	97.154	Astatotilapia_calliptera
ENSCVAG00000003539	rab12	100	89.431	ENSAMXG00000004882	rab12	100	89.431	Astyanax_mexicanus
ENSCVAG00000003539	rab12	93	81.739	ENSBTAG00000010356	RAB12	91	87.892	Bos_taurus
ENSCVAG00000003539	rab12	93	81.739	ENSCJAG00000015468	RAB12	66	87.444	Callithrix_jacchus
ENSCVAG00000003539	rab12	93	81.304	ENSCAFG00020023721	RAB12	77	87.444	Canis_lupus_dingo
ENSCVAG00000003539	rab12	93	81.739	ENSCHIG00000016103	RAB12	91	87.892	Capra_hircus
ENSCVAG00000003539	rab12	85	86.667	ENSCPOG00000022689	RAB12	100	89.048	Cavia_porcellus
ENSCVAG00000003539	rab12	100	78.313	ENSCCAG00000022862	RAB12	91	87.444	Cebus_capucinus
ENSCVAG00000003539	rab12	90	83.929	ENSCATG00000037784	RAB12	93	87.444	Cercocebus_atys
ENSCVAG00000003539	rab12	93	81.659	ENSCSAG00000017569	RAB12	72	81.452	Chlorocebus_sabaeus
ENSCVAG00000003539	rab12	93	82.174	ENSCPBG00000028375	RAB12	91	87.892	Chrysemys_picta_bellii
ENSCVAG00000003539	rab12	88	84.018	ENSCANG00000031453	RAB12	99	87.671	Colobus_angolensis_palliatus
ENSCVAG00000003539	rab12	93	81.739	ENSCGRG00001006958	Rab12	76	86.996	Cricetulus_griseus_chok1gshd
ENSCVAG00000003539	rab12	100	95.935	ENSCSEG00000016933	rab12	100	95.935	Cynoglossus_semilaevis
ENSCVAG00000003539	rab12	91	92.444	ENSDARG00000089428	rab12	94	93.636	Danio_rerio
ENSCVAG00000003539	rab12	83	87.805	ENSDNOG00000046064	RAB12	51	86.996	Dasypus_novemcinctus
ENSCVAG00000003539	rab12	91	82.819	ENSDORG00000008920	Rab12	98	87.444	Dipodomys_ordii
ENSCVAG00000003539	rab12	77	66.138	ENSEBUG00000006581	rab12	89	67.582	Eptatretus_burgeri
ENSCVAG00000003539	rab12	93	81.304	ENSEASG00005002926	RAB12	76	87.444	Equus_asinus_asinus
ENSCVAG00000003539	rab12	93	81.304	ENSECAG00000007384	RAB12	65	87.444	Equus_caballus
ENSCVAG00000003539	rab12	100	89.024	ENSELUG00000007123	rab12	100	86.992	Esox_lucius
ENSCVAG00000003539	rab12	93	81.304	ENSFCAG00000027710	RAB12	66	87.444	Felis_catus
ENSCVAG00000003539	rab12	100	97.967	ENSFHEG00000004319	rab12	100	97.967	Fundulus_heteroclitus
ENSCVAG00000003539	rab12	86	89.623	ENSGMOG00000012335	rab12	87	88.679	Gadus_morhua
ENSCVAG00000003539	rab12	97	80.083	ENSGALG00000033608	RAB12	89	87.444	Gallus_gallus
ENSCVAG00000003539	rab12	97	85.356	ENSGACG00000016639	rab12	100	89.140	Gasterosteus_aculeatus
ENSCVAG00000003539	rab12	93	82.174	ENSGAGG00000007278	RAB12	91	87.892	Gopherus_agassizii
ENSCVAG00000003539	rab12	100	97.154	ENSHBUG00000008497	rab12	100	97.154	Haplochromis_burtoni
ENSCVAG00000003539	rab12	95	82.203	ENSHGLG00000006189	RAB12	86	87.783	Heterocephalus_glaber_female
ENSCVAG00000003539	rab12	100	89.837	ENSHCOG00000012376	rab12	100	89.024	Hippocampus_comes
ENSCVAG00000003539	rab12	90	93.213	ENSIPUG00000017401	rab12	90	93.182	Ictalurus_punctatus
ENSCVAG00000003539	rab12	93	80.870	ENSSTOG00000025122	RAB12	96	87.215	Ictidomys_tridecemlineatus
ENSCVAG00000003539	rab12	90	83.929	ENSJJAG00000019064	Rab12	98	87.444	Jaculus_jaculus
ENSCVAG00000003539	rab12	100	91.463	ENSKMAG00000020056	rab12	100	90.650	Kryptolebias_marmoratus
ENSCVAG00000003539	rab12	100	95.122	ENSLBEG00000013756	rab12	100	95.122	Labrus_bergylta
ENSCVAG00000003539	rab12	100	81.928	ENSLACG00000010461	RAB12	100	81.928	Latimeria_chalumnae
ENSCVAG00000003539	rab12	100	83.936	ENSLOCG00000002680	rab12	100	85.081	Lepisosteus_oculatus
ENSCVAG00000003539	rab12	100	78.313	ENSMFAG00000043551	RAB12	91	87.444	Macaca_fascicularis
ENSCVAG00000003539	rab12	83	88.293	ENSMNEG00000040853	RAB12	88	87.444	Macaca_nemestrina
ENSCVAG00000003539	rab12	100	95.528	ENSMAMG00000006862	rab12	100	95.528	Mastacembelus_armatus
ENSCVAG00000003539	rab12	100	97.154	ENSMZEG00005024316	rab12	100	97.154	Maylandia_zebra
ENSCVAG00000003539	rab12	82	84.314	ENSMGAG00000009197	RAB12	100	88.235	Meleagris_gallopavo
ENSCVAG00000003539	rab12	93	81.739	ENSMAUG00000008371	Rab12	76	86.996	Mesocricetus_auratus
ENSCVAG00000003539	rab12	98	80.247	ENSMICG00000030661	RAB12	93	86.996	Microcebus_murinus
ENSCVAG00000003539	rab12	88	83.562	ENSMOCG00000000452	Rab12	100	87.215	Microtus_ochrogaster
ENSCVAG00000003539	rab12	85	87.560	ENSMODG00000021452	RAB12	66	87.892	Monodelphis_domestica
ENSCVAG00000003539	rab12	100	91.463	ENSMALG00000015762	rab12	100	90.244	Monopterus_albus
ENSCVAG00000003539	rab12	93	84.348	MGP_CAROLIEiJ_G0021839	Rab12	77	88.341	Mus_caroli
ENSCVAG00000003539	rab12	93	84.348	ENSMUSG00000023460	Rab12	92	88.341	Mus_musculus
ENSCVAG00000003539	rab12	93	84.348	MGP_PahariEiJ_G0020826	Rab12	92	88.341	Mus_pahari
ENSCVAG00000003539	rab12	93	84.348	MGP_SPRETEiJ_G0022750	Rab12	76	88.341	Mus_spretus
ENSCVAG00000003539	rab12	100	77.912	ENSMLUG00000002883	RAB12	92	87.444	Myotis_lucifugus
ENSCVAG00000003539	rab12	90	76.786	ENSNGAG00000019722	-	91	76.682	Nannospalax_galili
ENSCVAG00000003539	rab12	93	81.116	ENSNGAG00000024103	-	95	86.996	Nannospalax_galili
ENSCVAG00000003539	rab12	100	97.154	ENSNBRG00000014428	rab12	100	97.154	Neolamprologus_brichardi
ENSCVAG00000003539	rab12	100	77.912	ENSNLEG00000006939	RAB12	91	87.444	Nomascus_leucogenys
ENSCVAG00000003539	rab12	100	79.116	ENSMEUG00000000493	RAB12	91	87.892	Notamacropus_eugenii
ENSCVAG00000003539	rab12	88	84.932	ENSODEG00000006414	RAB12	100	88.584	Octodon_degus
ENSCVAG00000003539	rab12	100	96.748	ENSONIG00000018469	rab12	100	96.748	Oreochromis_niloticus
ENSCVAG00000003539	rab12	100	96.341	ENSORLG00000003902	rab12	100	96.341	Oryzias_latipes
ENSCVAG00000003539	rab12	100	95.935	ENSORLG00020005131	rab12	100	95.935	Oryzias_latipes_hni
ENSCVAG00000003539	rab12	100	95.935	ENSORLG00015007869	rab12	100	95.935	Oryzias_latipes_hsok
ENSCVAG00000003539	rab12	100	97.154	ENSOMEG00000008191	rab12	100	97.154	Oryzias_melastigma
ENSCVAG00000003539	rab12	85	84.286	ENSOGAG00000028002	RAB12	99	88.095	Otolemur_garnettii
ENSCVAG00000003539	rab12	78	89.005	ENSOARG00000000728	RAB12	88	86.977	Ovis_aries
ENSCVAG00000003539	rab12	83	84.058	ENSPPAG00000009152	RAB12	97	88.350	Pan_paniscus
ENSCVAG00000003539	rab12	100	77.912	ENSPPRG00000024521	RAB12	91	87.444	Panthera_pardus
ENSCVAG00000003539	rab12	100	77.912	ENSPTRG00000009853	RAB12	91	87.444	Pan_troglodytes
ENSCVAG00000003539	rab12	100	78.715	ENSPANG00000009320	RAB12	90	87.892	Papio_anubis
ENSCVAG00000003539	rab12	100	87.045	ENSPKIG00000008579	rab12	100	87.449	Paramormyrops_kingsleyae
ENSCVAG00000003539	rab12	100	88.618	ENSPMGG00000001890	rab12	100	87.398	Periophthalmus_magnuspinnatus
ENSCVAG00000003539	rab12	93	82.174	ENSPEMG00000021032	Rab12	77	87.444	Peromyscus_maniculatus_bairdii
ENSCVAG00000003539	rab12	93	82.759	ENSPCIG00000010453	RAB12	56	87.892	Phascolarctos_cinereus
ENSCVAG00000003539	rab12	100	96.341	ENSPFOG00000001579	rab12	100	96.341	Poecilia_formosa
ENSCVAG00000003539	rab12	100	96.341	ENSPLAG00000013594	rab12	100	96.341	Poecilia_latipinna
ENSCVAG00000003539	rab12	100	96.341	ENSPMEG00000010417	rab12	100	96.341	Poecilia_mexicana
ENSCVAG00000003539	rab12	100	96.341	ENSPREG00000017487	rab12	100	96.341	Poecilia_reticulata
ENSCVAG00000003539	rab12	93	81.304	ENSPPYG00000009015	-	66	87.444	Pongo_abelii
ENSCVAG00000003539	rab12	100	78.313	ENSPCAG00000015007	RAB12	91	87.444	Procavia_capensis
ENSCVAG00000003539	rab12	100	77.912	ENSPCOG00000019816	RAB12	91	87.444	Propithecus_coquereli
ENSCVAG00000003539	rab12	100	77.510	ENSPVAG00000002757	RAB12	91	86.996	Pteropus_vampyrus
ENSCVAG00000003539	rab12	100	97.154	ENSPNYG00000005654	rab12	100	97.154	Pundamilia_nyererei
ENSCVAG00000003539	rab12	100	97.154	ENSPNYG00000023905	rab12	100	97.154	Pundamilia_nyererei
ENSCVAG00000003539	rab12	100	88.618	ENSPNAG00000015031	rab12	100	88.618	Pygocentrus_nattereri
ENSCVAG00000003539	rab12	93	80.519	ENSRNOG00000019295	Rab12	83	86.341	Rattus_norvegicus
ENSCVAG00000003539	rab12	90	83.929	ENSRBIG00000028760	RAB12	96	87.444	Rhinopithecus_bieti
ENSCVAG00000003539	rab12	90	83.929	ENSRROG00000019249	RAB12	93	87.444	Rhinopithecus_roxellana
ENSCVAG00000003539	rab12	93	78.788	ENSSBOG00000021125	RAB12	80	88.038	Saimiri_boliviensis_boliviensis
ENSCVAG00000003539	rab12	93	82.096	ENSSHAG00000001489	RAB12	90	88.177	Sarcophilus_harrisii
ENSCVAG00000003539	rab12	100	93.089	ENSSMAG00000012678	rab12	100	91.870	Scophthalmus_maximus
ENSCVAG00000003539	rab12	100	96.341	ENSSDUG00000008505	rab12	100	96.341	Seriola_dumerili
ENSCVAG00000003539	rab12	100	96.341	ENSSLDG00000022239	rab12	100	96.341	Seriola_lalandi_dorsalis
ENSCVAG00000003539	rab12	83	89.216	ENSSPUG00000003222	RAB12	91	88.341	Sphenodon_punctatus
ENSCVAG00000003539	rab12	100	95.935	ENSSPAG00000010822	rab12	100	95.935	Stegastes_partitus
ENSCVAG00000003539	rab12	100	79.920	ENSSSCG00000038026	RAB12	91	88.341	Sus_scrofa
ENSCVAG00000003539	rab12	93	82.251	ENSTGUG00000009889	RAB12	100	82.000	Taeniopygia_guttata
ENSCVAG00000003539	rab12	100	91.463	ENSTRUG00000024455	rab12	100	89.431	Takifugu_rubripes
ENSCVAG00000003539	rab12	100	92.713	ENSTNIG00000014859	rab12	100	90.650	Tetraodon_nigroviridis
ENSCVAG00000003539	rab12	88	84.018	ENSTTRG00000008711	RAB12	99	87.671	Tursiops_truncatus
ENSCVAG00000003539	rab12	100	77.912	ENSUAMG00000018092	RAB12	91	87.444	Ursus_americanus
ENSCVAG00000003539	rab12	88	83.562	ENSVVUG00000011748	RAB12	99	86.878	Vulpes_vulpes
ENSCVAG00000003539	rab12	96	83.122	ENSXETG00000004289	rab12	72	88.839	Xenopus_tropicalis
ENSCVAG00000003539	rab12	100	93.496	ENSXCOG00000019310	rab12	100	92.276	Xiphophorus_couchianus
ENSCVAG00000003539	rab12	100	95.528	ENSXMAG00000023617	rab12	100	95.528	Xiphophorus_maculatus