EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000003621 (Gene tree)
Gene ID: 107094089
Gene Symbol: ptcd1 (1 of many)
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 9876 bases
Position: chrKL652963.1:4666-14541
Accession: 107094089
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000002473	PPR	PF01535.20	3.5e-13	1	1
ENSCVAP00000002483	PPR	PF01535.20	3.8e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000011662	-	1941	XM_015389503	ENSCVAP00000002473	646 (aa)	XP_015244989	-
ENSCVAT00000011652	-	1953	-	ENSCVAP00000002483	650 (aa)	-	-

Gene Model

Click here to download ENSCVAG00000003621's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000003621's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000003621	ptcd1	98	98.587	ENSCVAG00000015826	ptcd1	93	98.122

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000003621	ptcd1	88	46.634	ENSG00000106246	PTCD1	85	47.117	Homo_sapiens
ENSCVAG00000003621	ptcd1	88	46.634	ENSG00000248919	ATP5MF-PTCD1	80	46.732	Homo_sapiens
ENSCVAG00000003621	ptcd1	84	69.550	ENSAPOG00000010679	ptcd1	87	69.550	Acanthochromis_polyacanthus
ENSCVAG00000003621	ptcd1	89	47.455	ENSAMEG00000006224	-	79	48.033	Ailuropoda_melanoleuca
ENSCVAG00000003621	ptcd1	98	70.713	ENSACIG00000017861	ptcd1	97	70.713	Amphilophus_citrinellus
ENSCVAG00000003621	ptcd1	93	66.346	ENSAOCG00000022617	ptcd1	94	66.346	Amphiprion_ocellaris
ENSCVAG00000003621	ptcd1	98	66.768	ENSAOCG00000020741	-	93	67.228	Amphiprion_ocellaris
ENSCVAG00000003621	ptcd1	97	66.821	ENSAPEG00000022632	ptcd1	92	67.287	Amphiprion_percula
ENSCVAG00000003621	ptcd1	97	66.514	ENSATEG00000007016	ptcd1	92	66.767	Anabas_testudineus
ENSCVAG00000003621	ptcd1	88	49.073	ENSAPLG00000006862	-	93	49.320	Anas_platyrhynchos
ENSCVAG00000003621	ptcd1	89	48.534	ENSACAG00000012871	-	80	49.342	Anolis_carolinensis
ENSCVAG00000003621	ptcd1	88	46.242	ENSANAG00000035790	-	88	46.341	Aotus_nancymaae
ENSCVAG00000003621	ptcd1	98	69.406	ENSACLG00000002824	ptcd1	93	69.196	Astatotilapia_calliptera
ENSCVAG00000003621	ptcd1	87	53.181	ENSAMXG00000037292	ptcd1	86	52.951	Astyanax_mexicanus
ENSCVAG00000003621	ptcd1	88	47.508	ENSBTAG00000020440	-	74	48.590	Bos_taurus
ENSCVAG00000003621	ptcd1	88	46.634	ENSCJAG00000015815	-	86	46.732	Callithrix_jacchus
ENSCVAG00000003621	ptcd1	88	47.761	ENSCAFG00000015055	-	79	48.344	Canis_familiaris
ENSCVAG00000003621	ptcd1	88	47.761	ENSCAFG00020014480	-	79	48.344	Canis_lupus_dingo
ENSCVAG00000003621	ptcd1	88	47.403	ENSCHIG00000027000	-	85	47.565	Capra_hircus
ENSCVAG00000003621	ptcd1	88	45.588	ENSTSYG00000029495	-	85	46.393	Carlito_syrichta
ENSCVAG00000003621	ptcd1	90	46.266	ENSCAPG00000014660	-	92	46.667	Cavia_aperea
ENSCVAG00000003621	ptcd1	90	46.916	ENSCPOG00000001780	-	86	47.317	Cavia_porcellus
ENSCVAG00000003621	ptcd1	88	46.656	ENSCCAG00000034025	-	86	46.753	Cebus_capucinus
ENSCVAG00000003621	ptcd1	88	47.920	ENSCATG00000040859	-	85	48.510	Cercocebus_atys
ENSCVAG00000003621	ptcd1	87	48.328	ENSCLAG00000006354	-	85	48.026	Chinchilla_lanigera
ENSCVAG00000003621	ptcd1	82	47.857	ENSCSAG00000017794	-	82	48.490	Chlorocebus_sabaeus
ENSCVAG00000003621	ptcd1	87	46.753	ENSCPBG00000020866	-	82	48.191	Chrysemys_picta_bellii
ENSCVAG00000003621	ptcd1	83	30.070	ENSCING00000007717	-	96	30.070	Ciona_intestinalis
ENSCVAG00000003621	ptcd1	88	46.405	ENSCANG00000023441	-	85	47.446	Colobus_angolensis_palliatus
ENSCVAG00000003621	ptcd1	88	46.932	ENSCGRG00001023686	Ptcd1	85	47.826	Cricetulus_griseus_chok1gshd
ENSCVAG00000003621	ptcd1	88	46.932	ENSCGRG00000015031	Ptcd1	85	47.098	Cricetulus_griseus_crigri
ENSCVAG00000003621	ptcd1	95	61.575	ENSCSEG00000002378	ptcd1	90	62.205	Cynoglossus_semilaevis
ENSCVAG00000003621	ptcd1	92	50.077	ENSDARG00000076176	ptcd1	92	50.077	Danio_rerio
ENSCVAG00000003621	ptcd1	88	47.386	ENSDNOG00000009957	-	87	47.360	Dasypus_novemcinctus
ENSCVAG00000003621	ptcd1	88	47.204	ENSDORG00000000740	Ptcd1	87	47.300	Dipodomys_ordii
ENSCVAG00000003621	ptcd1	85	39.075	ENSEBUG00000014515	ptcd1	93	39.318	Eptatretus_burgeri
ENSCVAG00000003621	ptcd1	88	48.093	ENSEASG00005002480	-	85	48.185	Equus_asinus_asinus
ENSCVAG00000003621	ptcd1	88	48.590	ENSECAG00000016617	-	85	48.680	Equus_caballus
ENSCVAG00000003621	ptcd1	90	55.217	ENSELUG00000016517	ptcd1	85	55.217	Esox_lucius
ENSCVAG00000003621	ptcd1	88	46.972	ENSFCAG00000015069	-	85	47.525	Felis_catus
ENSCVAG00000003621	ptcd1	87	48.539	ENSFALG00000013803	-	85	48.864	Ficedula_albicollis
ENSCVAG00000003621	ptcd1	87	48.339	ENSFDAG00000006393	-	84	48.586	Fukomys_damarensis
ENSCVAG00000003621	ptcd1	78	82.480	ENSFHEG00000012491	ptcd1	89	82.480	Fundulus_heteroclitus
ENSCVAG00000003621	ptcd1	87	63.419	ENSGMOG00000007639	ptcd1	93	63.419	Gadus_morhua
ENSCVAG00000003621	ptcd1	88	46.926	ENSGALG00000004711	-	88	46.688	Gallus_gallus
ENSCVAG00000003621	ptcd1	98	76.161	ENSGAFG00000013175	ptcd1	93	76.080	Gambusia_affinis
ENSCVAG00000003621	ptcd1	87	72.348	ENSGACG00000016607	ptcd1	90	72.318	Gasterosteus_aculeatus
ENSCVAG00000003621	ptcd1	85	47.579	ENSGAGG00000021832	-	85	48.454	Gopherus_agassizii
ENSCVAG00000003621	ptcd1	88	45.888	ENSGGOG00000015123	-	85	46.370	Gorilla_gorilla
ENSCVAG00000003621	ptcd1	98	68.788	ENSHBUG00000018275	ptcd1	93	68.788	Haplochromis_burtoni
ENSCVAG00000003621	ptcd1	92	46.299	ENSHGLG00000017621	-	89	47.161	Heterocephalus_glaber_female
ENSCVAG00000003621	ptcd1	92	46.299	ENSHGLG00100007218	-	89	47.161	Heterocephalus_glaber_male
ENSCVAG00000003621	ptcd1	99	57.165	ENSHCOG00000010784	ptcd1	95	58.600	Hippocampus_comes
ENSCVAG00000003621	ptcd1	89	48.460	ENSSTOG00000001682	-	86	48.622	Ictidomys_tridecemlineatus
ENSCVAG00000003621	ptcd1	88	48.020	ENSJJAG00000000319	Ptcd1	86	48.350	Jaculus_jaculus
ENSCVAG00000003621	ptcd1	96	68.349	ENSKMAG00000008708	ptcd1	93	68.349	Kryptolebias_marmoratus
ENSCVAG00000003621	ptcd1	98	65.579	ENSLBEG00000008061	ptcd1	94	66.024	Labrus_bergylta
ENSCVAG00000003621	ptcd1	88	49.747	ENSLACG00000011172	ptcd1	84	49.747	Latimeria_chalumnae
ENSCVAG00000003621	ptcd1	89	52.327	ENSLOCG00000004833	ptcd1	94	51.248	Lepisosteus_oculatus
ENSCVAG00000003621	ptcd1	89	45.955	ENSLAFG00000002588	-	87	45.955	Loxodonta_africana
ENSCVAG00000003621	ptcd1	88	47.920	ENSMFAG00000041324	-	85	48.510	Macaca_fascicularis
ENSCVAG00000003621	ptcd1	88	47.920	ENSMMUG00000030408	-	85	48.510	Macaca_mulatta
ENSCVAG00000003621	ptcd1	88	48.087	ENSMNEG00000043786	-	85	48.675	Macaca_nemestrina
ENSCVAG00000003621	ptcd1	88	35.666	ENSMLEG00000031179	-	83	37.861	Mandrillus_leucophaeus
ENSCVAG00000003621	ptcd1	89	71.210	ENSMAMG00000007623	ptcd1	82	71.210	Mastacembelus_armatus
ENSCVAG00000003621	ptcd1	98	69.254	ENSMZEG00005012722	ptcd1	93	69.044	Maylandia_zebra
ENSCVAG00000003621	ptcd1	87	48.259	ENSMGAG00000004211	-	77	48.731	Meleagris_gallopavo
ENSCVAG00000003621	ptcd1	87	45.861	ENSMICG00000017428	-	85	46.103	Microcebus_murinus
ENSCVAG00000003621	ptcd1	97	65.507	ENSMMOG00000020243	ptcd1	89	72.097	Mola_mola
ENSCVAG00000003621	ptcd1	88	46.254	ENSMODG00000001350	-	83	46.254	Monodelphis_domestica
ENSCVAG00000003621	ptcd1	98	65.554	ENSMALG00000018442	ptcd1	92	65.554	Monopterus_albus
ENSCVAG00000003621	ptcd1	88	47.255	MGP_CAROLIEiJ_G0028011	Ptcd1	85	47.841	Mus_caroli
ENSCVAG00000003621	ptcd1	92	45.972	ENSMUSG00000029624	Ptcd1	90	46.530	Mus_musculus
ENSCVAG00000003621	ptcd1	89	46.635	MGP_PahariEiJ_G0024580	Ptcd1	88	46.635	Mus_pahari
ENSCVAG00000003621	ptcd1	92	45.687	MGP_SPRETEiJ_G0029012	Ptcd1	90	46.299	Mus_spretus
ENSCVAG00000003621	ptcd1	88	48.013	ENSMPUG00000016518	-	85	48.595	Mustela_putorius_furo
ENSCVAG00000003621	ptcd1	88	47.611	ENSMLUG00000010994	-	80	48.033	Myotis_lucifugus
ENSCVAG00000003621	ptcd1	98	69.080	ENSNBRG00000010079	ptcd1	96	69.149	Neolamprologus_brichardi
ENSCVAG00000003621	ptcd1	78	46.642	ENSNLEG00000011060	-	90	46.642	Nomascus_leucogenys
ENSCVAG00000003621	ptcd1	91	46.463	ENSMEUG00000006930	-	88	46.463	Notamacropus_eugenii
ENSCVAG00000003621	ptcd1	77	63.478	ENSOPRG00000013647	-	75	65.217	Ochotona_princeps
ENSCVAG00000003621	ptcd1	87	71.007	ENSONIG00000003168	ptcd1	96	71.007	Oreochromis_niloticus
ENSCVAG00000003621	ptcd1	84	46.853	ENSOANG00000007728	-	74	46.853	Ornithorhynchus_anatinus
ENSCVAG00000003621	ptcd1	90	47.222	ENSOCUG00000010584	-	85	47.798	Oryctolagus_cuniculus
ENSCVAG00000003621	ptcd1	95	70.465	ENSORLG00000009275	ptcd1	92	70.465	Oryzias_latipes
ENSCVAG00000003621	ptcd1	98	69.565	ENSORLG00020000988	ptcd1	95	69.891	Oryzias_latipes_hni
ENSCVAG00000003621	ptcd1	98	68.944	ENSORLG00015010557	ptcd1	95	69.267	Oryzias_latipes_hsok
ENSCVAG00000003621	ptcd1	97	69.279	ENSOMEG00000020627	ptcd1	95	69.449	Oryzias_melastigma
ENSCVAG00000003621	ptcd1	88	45.649	ENSOGAG00000010877	-	86	46.942	Otolemur_garnettii
ENSCVAG00000003621	ptcd1	88	43.922	ENSOARG00000018676	-	85	44.660	Ovis_aries
ENSCVAG00000003621	ptcd1	88	46.382	ENSPPAG00000036024	-	85	46.700	Pan_paniscus
ENSCVAG00000003621	ptcd1	88	46.972	ENSPPRG00000003478	-	86	46.972	Panthera_pardus
ENSCVAG00000003621	ptcd1	87	46.932	ENSPTRG00000019452	-	85	46.865	Pan_troglodytes
ENSCVAG00000003621	ptcd1	88	47.833	ENSPANG00000016730	-	85	48.425	Papio_anubis
ENSCVAG00000003621	ptcd1	98	45.429	ENSPKIG00000014215	ptcd1	97	45.597	Paramormyrops_kingsleyae
ENSCVAG00000003621	ptcd1	87	45.656	ENSPSIG00000011184	-	98	47.332	Pelodiscus_sinensis
ENSCVAG00000003621	ptcd1	76	39.810	ENSPMAG00000009667	ptcd1	100	39.810	Petromyzon_marinus
ENSCVAG00000003621	ptcd1	88	45.528	ENSPCIG00000024778	-	86	44.953	Phascolarctos_cinereus
ENSCVAG00000003621	ptcd1	98	75.153	ENSPFOG00000004458	ptcd1	93	75.460	Poecilia_formosa
ENSCVAG00000003621	ptcd1	98	75.385	ENSPLAG00000011051	ptcd1	95	74.962	Poecilia_latipinna
ENSCVAG00000003621	ptcd1	98	75.767	ENSPMEG00000020547	ptcd1	93	75.767	Poecilia_mexicana
ENSCVAG00000003621	ptcd1	97	75.776	ENSPREG00000000059	ptcd1	94	75.191	Poecilia_reticulata
ENSCVAG00000003621	ptcd1	88	45.990	ENSPPYG00000017377	-	90	46.370	Pongo_abelii
ENSCVAG00000003621	ptcd1	77	62.393	ENSPCAG00000001852	-	82	62.393	Procavia_capensis
ENSCVAG00000003621	ptcd1	87	46.358	ENSPCOG00000018596	-	85	46.458	Propithecus_coquereli
ENSCVAG00000003621	ptcd1	63	52.412	ENSPVAG00000007529	-	64	51.447	Pteropus_vampyrus
ENSCVAG00000003621	ptcd1	98	68.684	ENSPNYG00000019993	ptcd1	93	68.684	Pundamilia_nyererei
ENSCVAG00000003621	ptcd1	90	51.797	ENSPNAG00000014931	ptcd1	90	50.874	Pygocentrus_nattereri
ENSCVAG00000003621	ptcd1	91	46.870	ENSRNOG00000000987	Ptcd1	90	46.709	Rattus_norvegicus
ENSCVAG00000003621	ptcd1	88	46.458	ENSRBIG00000043393	-	85	47.508	Rhinopithecus_bieti
ENSCVAG00000003621	ptcd1	88	47.517	ENSRROG00000036420	-	85	48.581	Rhinopithecus_roxellana
ENSCVAG00000003621	ptcd1	88	46.557	ENSSBOG00000024114	-	86	46.656	Saimiri_boliviensis_boliviensis
ENSCVAG00000003621	ptcd1	88	47.833	ENSSHAG00000011376	-	91	47.833	Sarcophilus_harrisii
ENSCVAG00000003621	ptcd1	87	54.774	ENSSFOG00015007909	ptcd1	82	53.808	Scleropages_formosus
ENSCVAG00000003621	ptcd1	87	69.138	ENSSMAG00000000218	ptcd1	92	69.310	Scophthalmus_maximus
ENSCVAG00000003621	ptcd1	98	66.567	ENSSDUG00000015671	ptcd1	96	66.920	Seriola_dumerili
ENSCVAG00000003621	ptcd1	99	66.220	ENSSLDG00000014261	ptcd1	96	66.220	Seriola_lalandi_dorsalis
ENSCVAG00000003621	ptcd1	90	47.200	ENSSPUG00000003540	-	84	47.284	Sphenodon_punctatus
ENSCVAG00000003621	ptcd1	97	69.419	ENSSPAG00000011049	ptcd1	91	69.878	Stegastes_partitus
ENSCVAG00000003621	ptcd1	90	46.984	ENSSSCG00000007622	-	92	46.984	Sus_scrofa
ENSCVAG00000003621	ptcd1	85	50.088	ENSTGUG00000007563	-	94	50.613	Taeniopygia_guttata
ENSCVAG00000003621	ptcd1	98	61.955	ENSTRUG00000013471	ptcd1	92	61.955	Takifugu_rubripes
ENSCVAG00000003621	ptcd1	97	63.400	ENSTNIG00000008271	ptcd1	96	63.400	Tetraodon_nigroviridis
ENSCVAG00000003621	ptcd1	90	46.677	ENSTBEG00000011021	-	88	46.677	Tupaia_belangeri
ENSCVAG00000003621	ptcd1	88	46.833	ENSTTRG00000003006	-	86	46.833	Tursiops_truncatus
ENSCVAG00000003621	ptcd1	89	47.126	ENSUAMG00000008049	-	85	47.377	Ursus_americanus
ENSCVAG00000003621	ptcd1	88	48.093	ENSVVUG00000008836	-	85	48.675	Vulpes_vulpes
ENSCVAG00000003621	ptcd1	94	47.393	ENSXETG00000009891	ptcd1	92	47.476	Xenopus_tropicalis
ENSCVAG00000003621	ptcd1	98	77.280	ENSXMAG00000015540	ptcd1	92	77.743	Xiphophorus_maculatus