EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000003680 (Gene tree)
Gene ID: 107095705
Gene Symbol: sf3b1
Alias: tst|wu:fb99f09
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 17269 bases
Position: chrKL653065.1:7047-24315
Accession: 107095705
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000002547	SF3b1	PF08920.10	6e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000011528	-	3860	XM_015391940	ENSCVAP00000002547	1268 (aa)	XP_015247426	-

Gene Model

Click here to download ENSCVAG00000003680's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000003680's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000003680	sf3b1	99	93.676	ENSG00000115524	SF3B1	94	97.788	Homo_sapiens
ENSCVAG00000003680	sf3b1	99	98.418	ENSAPOG00000011894	sf3b1	96	98.418	Acanthochromis_polyacanthus
ENSCVAG00000003680	sf3b1	99	93.556	ENSAMEG00000013809	SF3B1	95	93.556	Ailuropoda_melanoleuca
ENSCVAG00000003680	sf3b1	99	97.387	ENSACIG00000020910	sf3b1	93	97.387	Amphilophus_citrinellus
ENSCVAG00000003680	sf3b1	99	98.418	ENSAOCG00000004478	sf3b1	96	98.418	Amphiprion_ocellaris
ENSCVAG00000003680	sf3b1	99	98.418	ENSAPEG00000012937	sf3b1	96	98.418	Amphiprion_percula
ENSCVAG00000003680	sf3b1	99	98.416	ENSATEG00000020435	sf3b1	96	98.416	Anabas_testudineus
ENSCVAG00000003680	sf3b1	99	93.939	ENSAPLG00000003993	SF3B1	95	93.939	Anas_platyrhynchos
ENSCVAG00000003680	sf3b1	99	93.671	ENSACAG00000009612	SF3B1	96	93.671	Anolis_carolinensis
ENSCVAG00000003680	sf3b1	99	93.676	ENSANAG00000021577	SF3B1	96	95.251	Aotus_nancymaae
ENSCVAG00000003680	sf3b1	99	97.308	ENSACLG00000023470	sf3b1	96	97.308	Astatotilapia_calliptera
ENSCVAG00000003680	sf3b1	99	96.996	ENSAMXG00000002219	sf3b1	96	96.996	Astyanax_mexicanus
ENSCVAG00000003680	sf3b1	99	93.676	ENSBTAG00000008915	SF3B1	96	93.676	Bos_taurus
ENSCVAG00000003680	sf3b1	98	64.774	WBGene00011605	sftb-1	95	64.927	Caenorhabditis_elegans
ENSCVAG00000003680	sf3b1	99	93.676	ENSCJAG00000003902	SF3B1	96	93.676	Callithrix_jacchus
ENSCVAG00000003680	sf3b1	99	93.676	ENSCAFG00000010826	SF3B1	96	93.676	Canis_familiaris
ENSCVAG00000003680	sf3b1	99	93.676	ENSCAFG00020004750	SF3B1	96	93.676	Canis_lupus_dingo
ENSCVAG00000003680	sf3b1	99	93.676	ENSCHIG00000015226	SF3B1	96	93.676	Capra_hircus
ENSCVAG00000003680	sf3b1	99	93.597	ENSTSYG00000009214	SF3B1	96	93.597	Carlito_syrichta
ENSCVAG00000003680	sf3b1	99	93.497	ENSCAPG00000006547	SF3B1	96	93.497	Cavia_aperea
ENSCVAG00000003680	sf3b1	99	93.625	ENSCPOG00000009353	SF3B1	96	93.625	Cavia_porcellus
ENSCVAG00000003680	sf3b1	99	93.676	ENSCCAG00000020506	SF3B1	96	93.676	Cebus_capucinus
ENSCVAG00000003680	sf3b1	99	93.676	ENSCATG00000035735	SF3B1	96	93.676	Cercocebus_atys
ENSCVAG00000003680	sf3b1	99	93.631	ENSCLAG00000014767	SF3B1	95	93.631	Chinchilla_lanigera
ENSCVAG00000003680	sf3b1	99	93.676	ENSCSAG00000011505	SF3B1	96	93.676	Chlorocebus_sabaeus
ENSCVAG00000003680	sf3b1	75	92.474	ENSCHOG00000009860	SF3B1	72	92.474	Choloepus_hoffmanni
ENSCVAG00000003680	sf3b1	99	93.903	ENSCPBG00000021902	SF3B1	96	95.246	Chrysemys_picta_bellii
ENSCVAG00000003680	sf3b1	71	78.081	ENSCING00000002558	-	99	78.516	Ciona_intestinalis
ENSCVAG00000003680	sf3b1	99	80.031	ENSCSAVG00000002559	-	96	80.031	Ciona_savignyi
ENSCVAG00000003680	sf3b1	99	93.676	ENSCANG00000029415	SF3B1	96	93.676	Colobus_angolensis_palliatus
ENSCVAG00000003680	sf3b1	99	93.676	ENSCGRG00001016990	Sf3b1	96	93.676	Cricetulus_griseus_chok1gshd
ENSCVAG00000003680	sf3b1	99	93.676	ENSCGRG00000005301	Sf3b1	96	93.676	Cricetulus_griseus_crigri
ENSCVAG00000003680	sf3b1	99	93.824	ENSCSEG00000003860	sf3b1	96	93.824	Cynoglossus_semilaevis
ENSCVAG00000003680	sf3b1	99	96.200	ENSDARG00000056138	sf3b1	96	96.200	Danio_rerio
ENSCVAG00000003680	sf3b1	99	93.602	ENSDNOG00000011754	SF3B1	96	93.602	Dasypus_novemcinctus
ENSCVAG00000003680	sf3b1	99	91.793	ENSDORG00000002399	Sf3b1	96	91.713	Dipodomys_ordii
ENSCVAG00000003680	sf3b1	99	75.610	FBgn0031266	Sf3b1	96	75.610	Drosophila_melanogaster
ENSCVAG00000003680	sf3b1	86	92.209	ENSETEG00000009188	SF3B1	100	92.209	Echinops_telfairi
ENSCVAG00000003680	sf3b1	99	86.180	ENSEBUG00000004325	sf3b1	95	89.089	Eptatretus_burgeri
ENSCVAG00000003680	sf3b1	99	93.676	ENSEASG00005020159	SF3B1	94	93.676	Equus_asinus_asinus
ENSCVAG00000003680	sf3b1	99	93.676	ENSECAG00000021657	SF3B1	94	93.676	Equus_caballus
ENSCVAG00000003680	sf3b1	86	100.000	ENSEEUG00000000836	SF3B1	77	100.000	Erinaceus_europaeus
ENSCVAG00000003680	sf3b1	99	95.991	ENSELUG00000005977	sf3b1	94	95.991	Esox_lucius
ENSCVAG00000003680	sf3b1	99	93.676	ENSFCAG00000005038	SF3B1	96	93.676	Felis_catus
ENSCVAG00000003680	sf3b1	99	93.939	ENSFALG00000004281	SF3B1	95	93.939	Ficedula_albicollis
ENSCVAG00000003680	sf3b1	99	93.676	ENSFDAG00000017510	SF3B1	96	93.676	Fukomys_damarensis
ENSCVAG00000003680	sf3b1	99	98.337	ENSFHEG00000014333	sf3b1	96	98.337	Fundulus_heteroclitus
ENSCVAG00000003680	sf3b1	99	95.498	ENSGMOG00000006773	sf3b1	96	95.893	Gadus_morhua
ENSCVAG00000003680	sf3b1	99	93.983	ENSGALG00000008038	SF3B1	96	93.983	Gallus_gallus
ENSCVAG00000003680	sf3b1	98	99.517	ENSGAFG00000000704	sf3b1	96	99.517	Gambusia_affinis
ENSCVAG00000003680	sf3b1	99	96.759	ENSGACG00000008839	sf3b1	96	96.759	Gasterosteus_aculeatus
ENSCVAG00000003680	sf3b1	99	93.780	ENSGAGG00000017478	SF3B1	96	93.239	Gopherus_agassizii
ENSCVAG00000003680	sf3b1	99	88.287	ENSGGOG00000009264	SF3B1	96	88.367	Gorilla_gorilla
ENSCVAG00000003680	sf3b1	99	97.308	ENSHBUG00000007705	sf3b1	96	97.308	Haplochromis_burtoni
ENSCVAG00000003680	sf3b1	99	93.631	ENSHGLG00000008285	-	95	93.631	Heterocephalus_glaber_female
ENSCVAG00000003680	sf3b1	99	91.561	ENSHGLG00100005535	-	95	91.561	Heterocephalus_glaber_male
ENSCVAG00000003680	sf3b1	99	97.165	ENSHCOG00000016775	sf3b1	96	97.165	Hippocampus_comes
ENSCVAG00000003680	sf3b1	99	96.835	ENSIPUG00000013171	sf3b1	96	96.835	Ictalurus_punctatus
ENSCVAG00000003680	sf3b1	99	93.676	ENSSTOG00000011034	SF3B1	96	93.676	Ictidomys_tridecemlineatus
ENSCVAG00000003680	sf3b1	99	93.605	ENSJJAG00000010903	Sf3b1	96	93.605	Jaculus_jaculus
ENSCVAG00000003680	sf3b1	99	97.553	ENSKMAG00000004009	sf3b1	96	97.553	Kryptolebias_marmoratus
ENSCVAG00000003680	sf3b1	99	97.070	ENSLBEG00000022208	sf3b1	96	97.070	Labrus_bergylta
ENSCVAG00000003680	sf3b1	99	90.190	ENSLACG00000014832	SF3B1	95	90.269	Latimeria_chalumnae
ENSCVAG00000003680	sf3b1	99	95.433	ENSLOCG00000003899	sf3b1	96	95.433	Lepisosteus_oculatus
ENSCVAG00000003680	sf3b1	99	93.676	ENSLAFG00000001956	SF3B1	96	93.676	Loxodonta_africana
ENSCVAG00000003680	sf3b1	99	93.631	ENSMMUG00000022430	SF3B1	95	93.631	Macaca_mulatta
ENSCVAG00000003680	sf3b1	99	93.676	ENSMNEG00000042333	SF3B1	96	95.251	Macaca_nemestrina
ENSCVAG00000003680	sf3b1	94	88.730	ENSMLEG00000026141	SF3B1	94	89.301	Mandrillus_leucophaeus
ENSCVAG00000003680	sf3b1	99	98.337	ENSMAMG00000010241	sf3b1	96	98.337	Mastacembelus_armatus
ENSCVAG00000003680	sf3b1	99	97.308	ENSMZEG00005021254	sf3b1	96	97.308	Maylandia_zebra
ENSCVAG00000003680	sf3b1	99	93.301	ENSMGAG00000007017	SF3B1	96	93.301	Meleagris_gallopavo
ENSCVAG00000003680	sf3b1	99	89.252	ENSMAUG00000009071	Sf3b1	95	89.252	Mesocricetus_auratus
ENSCVAG00000003680	sf3b1	99	93.676	ENSMICG00000013879	SF3B1	96	93.676	Microcebus_murinus
ENSCVAG00000003680	sf3b1	99	89.181	ENSMOCG00000000455	Sf3b1	95	89.181	Microtus_ochrogaster
ENSCVAG00000003680	sf3b1	87	97.455	ENSMMOG00000000475	sf3b1	100	97.455	Mola_mola
ENSCVAG00000003680	sf3b1	99	93.123	ENSMODG00000012275	SF3B1	96	93.123	Monodelphis_domestica
ENSCVAG00000003680	sf3b1	99	98.179	ENSMALG00000017211	sf3b1	96	98.179	Monopterus_albus
ENSCVAG00000003680	sf3b1	99	93.676	MGP_CAROLIEiJ_G0014141	Sf3b1	96	93.676	Mus_caroli
ENSCVAG00000003680	sf3b1	99	93.676	ENSMUSG00000025982	Sf3b1	96	93.676	Mus_musculus
ENSCVAG00000003680	sf3b1	99	93.676	MGP_SPRETEiJ_G0014947	Sf3b1	96	93.676	Mus_spretus
ENSCVAG00000003680	sf3b1	99	93.676	ENSMPUG00000007799	SF3B1	96	93.676	Mustela_putorius_furo
ENSCVAG00000003680	sf3b1	99	92.490	ENSMLUG00000000840	SF3B1	96	92.490	Myotis_lucifugus
ENSCVAG00000003680	sf3b1	99	93.339	ENSNGAG00000021884	-	96	93.339	Nannospalax_galili
ENSCVAG00000003680	sf3b1	99	92.259	ENSNBRG00000015816	sf3b1	96	92.326	Neolamprologus_brichardi
ENSCVAG00000003680	sf3b1	99	93.676	ENSNLEG00000006861	SF3B1	96	93.676	Nomascus_leucogenys
ENSCVAG00000003680	sf3b1	72	99.717	ENSMEUG00000015848	-	66	99.717	Notamacropus_eugenii
ENSCVAG00000003680	sf3b1	99	80.835	ENSOPRG00000008596	SF3B1	96	80.989	Ochotona_princeps
ENSCVAG00000003680	sf3b1	99	93.676	ENSODEG00000011153	-	96	93.676	Octodon_degus
ENSCVAG00000003680	sf3b1	99	97.308	ENSONIG00000013758	sf3b1	96	97.308	Oreochromis_niloticus
ENSCVAG00000003680	sf3b1	82	95.861	ENSOCUG00000012722	-	92	95.861	Oryctolagus_cuniculus
ENSCVAG00000003680	sf3b1	99	98.179	ENSORLG00000020219	sf3b1	96	98.179	Oryzias_latipes
ENSCVAG00000003680	sf3b1	99	98.179	ENSORLG00020001746	sf3b1	96	98.179	Oryzias_latipes_hni
ENSCVAG00000003680	sf3b1	67	96.564	ENSORLG00015001759	sf3b1	98	96.564	Oryzias_latipes_hsok
ENSCVAG00000003680	sf3b1	99	98.416	ENSOMEG00000019231	sf3b1	96	98.416	Oryzias_melastigma
ENSCVAG00000003680	sf3b1	51	72.952	ENSOGAG00000000267	-	100	72.952	Otolemur_garnettii
ENSCVAG00000003680	sf3b1	99	93.676	ENSOARG00000015374	SF3B1	96	93.676	Ovis_aries
ENSCVAG00000003680	sf3b1	99	93.676	ENSPPAG00000035007	SF3B1	96	93.676	Pan_paniscus
ENSCVAG00000003680	sf3b1	99	93.676	ENSPPRG00000009090	SF3B1	96	93.676	Panthera_pardus
ENSCVAG00000003680	sf3b1	99	93.676	ENSPTIG00000021557	SF3B1	96	93.676	Panthera_tigris_altaica
ENSCVAG00000003680	sf3b1	99	86.100	ENSPTRG00000012771	SF3B1	96	86.100	Pan_troglodytes
ENSCVAG00000003680	sf3b1	99	93.676	ENSPANG00000013417	SF3B1	96	93.676	Papio_anubis
ENSCVAG00000003680	sf3b1	99	96.130	ENSPKIG00000000784	sf3b1	96	96.130	Paramormyrops_kingsleyae
ENSCVAG00000003680	sf3b1	99	92.658	ENSPSIG00000017222	SF3B1	94	92.658	Pelodiscus_sinensis
ENSCVAG00000003680	sf3b1	94	97.397	ENSPMGG00000004330	sf3b1	99	97.397	Periophthalmus_magnuspinnatus
ENSCVAG00000003680	sf3b1	99	93.631	ENSPEMG00000010699	Sf3b1	96	93.631	Peromyscus_maniculatus_bairdii
ENSCVAG00000003680	sf3b1	99	89.064	ENSPMAG00000001311	sf3b1	96	89.378	Petromyzon_marinus
ENSCVAG00000003680	sf3b1	99	93.123	ENSPCIG00000010642	SF3B1	96	93.123	Phascolarctos_cinereus
ENSCVAG00000003680	sf3b1	99	99.604	ENSPFOG00000000073	sf3b1	96	99.604	Poecilia_formosa
ENSCVAG00000003680	sf3b1	99	99.604	ENSPLAG00000002293	sf3b1	96	99.604	Poecilia_latipinna
ENSCVAG00000003680	sf3b1	99	99.683	ENSPMEG00000000446	sf3b1	94	99.683	Poecilia_mexicana
ENSCVAG00000003680	sf3b1	99	99.604	ENSPREG00000019652	sf3b1	96	99.604	Poecilia_reticulata
ENSCVAG00000003680	sf3b1	81	97.284	ENSPPYG00000013044	SF3B1	95	97.284	Pongo_abelii
ENSCVAG00000003680	sf3b1	99	93.518	ENSPCAG00000009292	SF3B1	96	93.518	Procavia_capensis
ENSCVAG00000003680	sf3b1	99	93.676	ENSPCOG00000024074	SF3B1	96	93.676	Propithecus_coquereli
ENSCVAG00000003680	sf3b1	99	93.676	ENSPVAG00000008302	SF3B1	96	93.676	Pteropus_vampyrus
ENSCVAG00000003680	sf3b1	99	97.229	ENSPNYG00000014939	sf3b1	96	97.229	Pundamilia_nyererei
ENSCVAG00000003680	sf3b1	99	97.075	ENSPNAG00000008288	sf3b1	96	97.075	Pygocentrus_nattereri
ENSCVAG00000003680	sf3b1	99	93.676	ENSRNOG00000013516	Sf3b1	96	93.676	Rattus_norvegicus
ENSCVAG00000003680	sf3b1	99	89.786	ENSRBIG00000026096	SF3B1	96	89.786	Rhinopithecus_bieti
ENSCVAG00000003680	sf3b1	99	93.676	ENSRROG00000031308	SF3B1	96	93.676	Rhinopithecus_roxellana
ENSCVAG00000003680	sf3b1	99	93.676	ENSSBOG00000020080	SF3B1	96	93.676	Saimiri_boliviensis_boliviensis
ENSCVAG00000003680	sf3b1	99	93.123	ENSSHAG00000017564	SF3B1	96	93.123	Sarcophilus_harrisii
ENSCVAG00000003680	sf3b1	99	96.361	ENSSFOG00015021535	sf3b1	96	96.361	Scleropages_formosus
ENSCVAG00000003680	sf3b1	99	97.557	ENSSMAG00000013977	sf3b1	95	97.557	Scophthalmus_maximus
ENSCVAG00000003680	sf3b1	99	98.496	ENSSDUG00000017422	sf3b1	96	98.496	Seriola_dumerili
ENSCVAG00000003680	sf3b1	99	98.575	ENSSLDG00000019495	sf3b1	96	98.575	Seriola_lalandi_dorsalis
ENSCVAG00000003680	sf3b1	73	99.806	ENSSARG00000007016	SF3B1	71	99.806	Sorex_araneus
ENSCVAG00000003680	sf3b1	99	93.587	ENSSPUG00000000410	SF3B1	96	93.587	Sphenodon_punctatus
ENSCVAG00000003680	sf3b1	99	98.258	ENSSPAG00000010451	sf3b1	95	98.258	Stegastes_partitus
ENSCVAG00000003680	sf3b1	95	93.012	ENSSSCG00000016075	SF3B1	100	92.896	Sus_scrofa
ENSCVAG00000003680	sf3b1	99	93.903	ENSTGUG00000010553	SF3B1	96	93.903	Taeniopygia_guttata
ENSCVAG00000003680	sf3b1	99	97.546	ENSTRUG00000015534	sf3b1	96	97.546	Takifugu_rubripes
ENSCVAG00000003680	sf3b1	87	97.004	ENSTBEG00000008714	SF3B1	93	97.004	Tupaia_belangeri
ENSCVAG00000003680	sf3b1	92	93.640	ENSTTRG00000003414	SF3B1	88	93.640	Tursiops_truncatus
ENSCVAG00000003680	sf3b1	93	83.442	ENSUAMG00000018506	SF3B1	96	98.919	Ursus_americanus
ENSCVAG00000003680	sf3b1	99	93.676	ENSUMAG00000020945	SF3B1	96	93.676	Ursus_maritimus
ENSCVAG00000003680	sf3b1	94	93.628	ENSVPAG00000005798	SF3B1	92	93.628	Vicugna_pacos
ENSCVAG00000003680	sf3b1	99	93.676	ENSVVUG00000025948	SF3B1	91	93.676	Vulpes_vulpes
ENSCVAG00000003680	sf3b1	99	92.016	ENSXETG00000013339	sf3b1	96	92.016	Xenopus_tropicalis
ENSCVAG00000003680	sf3b1	99	94.616	ENSXCOG00000018086	sf3b1	96	94.933	Xiphophorus_couchianus
ENSCVAG00000003680	sf3b1	99	99.446	ENSXMAG00000007369	sf3b1	97	99.446	Xiphophorus_maculatus