EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000004126 (Gene tree)
Gene ID: 107081871
Gene Symbol: gfm1
Alias: fc96f12|wu:fc96f12|zgc:154041
Full Name: G elongation factor mitochondrial 1
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 19036 bases
Position: chrKL652544.1:1835762-1854797
Accession: 107081871
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000002925	GTP_EFTU	PF00009.27	4.6e-63	1	1
ENSCVAP00000021804	GTP_EFTU	PF00009.27	5.2e-63	1	1
ENSCVAP00000002925	GTP_EFTU_D2	PF03144.25	1.2e-16	1	1
ENSCVAP00000021804	GTP_EFTU_D2	PF03144.25	1.3e-16	1	1
ENSCVAP00000021804	EFG_IV	PF03764.18	1.8e-37	1	1
ENSCVAP00000002925	EFG_IV	PF03764.18	1.8e-37	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000010896	-	2124	-	ENSCVAP00000002925	707 (aa)	-	-
ENSCVAT00000010871	-	4020	XM_015370214	ENSCVAP00000021804	747 (aa)	XP_015225700	UPI0007429B06

Gene Model

Click here to download ENSCVAG00000004126's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000004126's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000004126	gfm1	96	32.385	ENSCVAG00000010057	gfm2	96	32.821
ENSCVAG00000004126	gfm1	75	38.926	ENSCVAG00000005478	-	73	38.926
ENSCVAG00000004126	gfm1	52	34.759	ENSCVAG00000021129	guf1	67	34.759
ENSCVAG00000004126	gfm1	77	33.621	ENSCVAG00000012537	eftud2	63	33.621
ENSCVAG00000004126	gfm1	73	38.926	ENSCVAG00000018746	eef2b	72	38.926

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000004126	gfm1	99	81.268	ENSG00000168827	GFM1	100	93.333	Homo_sapiens
ENSCVAG00000004126	gfm1	94	90.075	ENSAPOG00000016489	gfm1	99	89.398	Acanthochromis_polyacanthus
ENSCVAG00000004126	gfm1	99	81.997	ENSAMEG00000013542	GFM1	96	83.218	Ailuropoda_melanoleuca
ENSCVAG00000004126	gfm1	100	86.332	ENSACIG00000014465	gfm1	94	88.414	Amphilophus_citrinellus
ENSCVAG00000004126	gfm1	100	91.031	ENSAOCG00000006023	gfm1	100	91.031	Amphiprion_ocellaris
ENSCVAG00000004126	gfm1	100	90.897	ENSAPEG00000024499	gfm1	100	90.897	Amphiprion_percula
ENSCVAG00000004126	gfm1	100	91.711	ENSATEG00000013789	gfm1	100	91.711	Anabas_testudineus
ENSCVAG00000004126	gfm1	99	80.307	ENSAPLG00000005022	GFM1	100	81.655	Anas_platyrhynchos
ENSCVAG00000004126	gfm1	99	81.549	ENSACAG00000006829	GFM1	97	82.500	Anolis_carolinensis
ENSCVAG00000004126	gfm1	99	80.986	ENSANAG00000035983	GFM1	99	80.295	Aotus_nancymaae
ENSCVAG00000004126	gfm1	100	93.048	ENSACLG00000016586	gfm1	100	93.048	Astatotilapia_calliptera
ENSCVAG00000004126	gfm1	100	86.364	ENSAMXG00000013435	gfm1	98	87.415	Astyanax_mexicanus
ENSCVAG00000004126	gfm1	99	81.408	ENSBTAG00000027795	GFM1	96	82.500	Bos_taurus
ENSCVAG00000004126	gfm1	98	56.491	WBGene00009246	gfm-1	95	57.465	Caenorhabditis_elegans
ENSCVAG00000004126	gfm1	99	81.690	ENSCJAG00000000363	GFM1	96	82.940	Callithrix_jacchus
ENSCVAG00000004126	gfm1	99	81.857	ENSCAFG00000009006	GFM1	99	82.861	Canis_familiaris
ENSCVAG00000004126	gfm1	99	81.857	ENSCAFG00020005878	GFM1	98	83.450	Canis_lupus_dingo
ENSCVAG00000004126	gfm1	99	81.549	ENSCHIG00000015220	GFM1	96	82.639	Capra_hircus
ENSCVAG00000004126	gfm1	99	81.294	ENSTSYG00000002013	GFM1	99	80.749	Carlito_syrichta
ENSCVAG00000004126	gfm1	99	70.810	ENSCAPG00000005699	GFM1	97	72.462	Cavia_aperea
ENSCVAG00000004126	gfm1	99	81.575	ENSCPOG00000001194	GFM1	99	80.507	Cavia_porcellus
ENSCVAG00000004126	gfm1	99	81.549	ENSCCAG00000025561	GFM1	96	82.802	Cebus_capucinus
ENSCVAG00000004126	gfm1	99	81.268	ENSCATG00000037622	GFM1	99	80.697	Cercocebus_atys
ENSCVAG00000004126	gfm1	99	80.731	ENSCLAG00000002503	GFM1	95	81.831	Chinchilla_lanigera
ENSCVAG00000004126	gfm1	99	80.986	ENSCSAG00000012162	GFM1	99	80.563	Chlorocebus_sabaeus
ENSCVAG00000004126	gfm1	99	71.730	ENSCHOG00000004867	GFM1	99	71.429	Choloepus_hoffmanni
ENSCVAG00000004126	gfm1	99	81.549	ENSCPBG00000018367	GFM1	99	80.914	Chrysemys_picta_bellii
ENSCVAG00000004126	gfm1	98	57.762	ENSCING00000011960	-	93	59.161	Ciona_intestinalis
ENSCVAG00000004126	gfm1	98	59.716	ENSCSAVG00000008514	-	99	60.313	Ciona_savignyi
ENSCVAG00000004126	gfm1	99	80.986	ENSCANG00000031714	GFM1	99	80.563	Colobus_angolensis_palliatus
ENSCVAG00000004126	gfm1	99	81.549	ENSCGRG00001022095	GFM1	99	80.697	Cricetulus_griseus_chok1gshd
ENSCVAG00000004126	gfm1	99	81.549	ENSCGRG00000012043	GFM1	99	80.697	Cricetulus_griseus_crigri
ENSCVAG00000004126	gfm1	100	84.507	ENSCSEG00000017088	gfm1	99	83.956	Cynoglossus_semilaevis
ENSCVAG00000004126	gfm1	100	83.957	ENSDARG00000063624	gfm1	100	83.957	Danio_rerio
ENSCVAG00000004126	gfm1	54	80.941	ENSDNOG00000016385	-	99	80.941	Dasypus_novemcinctus
ENSCVAG00000004126	gfm1	99	79.044	ENSDORG00000014165	Gfm1	99	78.743	Dipodomys_ordii
ENSCVAG00000004126	gfm1	99	67.560	FBgn0263133	mEFG1	95	68.970	Drosophila_melanogaster
ENSCVAG00000004126	gfm1	99	73.072	ENSETEG00000019197	GFM1	96	74.412	Echinops_telfairi
ENSCVAG00000004126	gfm1	94	62.315	ENSEBUG00000012794	gfm1	100	64.095	Eptatretus_burgeri
ENSCVAG00000004126	gfm1	99	59.607	ENSEEUG00000000429	GFM1	98	61.399	Erinaceus_europaeus
ENSCVAG00000004126	gfm1	100	86.364	ENSELUG00000014728	gfm1	100	86.364	Esox_lucius
ENSCVAG00000004126	gfm1	99	81.435	ENSFCAG00000013291	GFM1	99	80.908	Felis_catus
ENSCVAG00000004126	gfm1	94	80.299	ENSFALG00000007619	GFM1	99	82.090	Ficedula_albicollis
ENSCVAG00000004126	gfm1	99	81.013	ENSFDAG00000016559	GFM1	99	79.973	Fukomys_damarensis
ENSCVAG00000004126	gfm1	100	95.321	ENSFHEG00000006091	gfm1	100	95.321	Fundulus_heteroclitus
ENSCVAG00000004126	gfm1	100	85.972	ENSGMOG00000010161	gfm1	100	87.758	Gadus_morhua
ENSCVAG00000004126	gfm1	99	80.839	ENSGALG00000009634	GFM1	98	81.931	Gallus_gallus
ENSCVAG00000004126	gfm1	100	94.519	ENSGAFG00000012527	gfm1	100	94.519	Gambusia_affinis
ENSCVAG00000004126	gfm1	100	90.921	ENSGACG00000009864	gfm1	100	90.921	Gasterosteus_aculeatus
ENSCVAG00000004126	gfm1	99	81.268	ENSGGOG00000003085	GFM1	99	80.697	Gorilla_gorilla
ENSCVAG00000004126	gfm1	100	93.182	ENSHBUG00000002120	gfm1	100	93.182	Haplochromis_burtoni
ENSCVAG00000004126	gfm1	99	80.309	ENSHGLG00000016855	GFM1	96	81.553	Heterocephalus_glaber_female
ENSCVAG00000004126	gfm1	99	80.309	ENSHGLG00100013049	GFM1	96	81.553	Heterocephalus_glaber_male
ENSCVAG00000004126	gfm1	100	89.692	ENSHCOG00000007638	gfm1	100	89.692	Hippocampus_comes
ENSCVAG00000004126	gfm1	100	86.497	ENSIPUG00000005873	gfm1	100	86.497	Ictalurus_punctatus
ENSCVAG00000004126	gfm1	99	79.325	ENSSTOG00000010150	GFM1	97	80.583	Ictidomys_tridecemlineatus
ENSCVAG00000004126	gfm1	99	80.563	ENSJJAG00000016447	Gfm1	99	79.759	Jaculus_jaculus
ENSCVAG00000004126	gfm1	100	89.572	ENSKMAG00000020768	gfm1	100	89.572	Kryptolebias_marmoratus
ENSCVAG00000004126	gfm1	98	90.544	ENSLBEG00000021315	gfm1	100	92.154	Labrus_bergylta
ENSCVAG00000004126	gfm1	99	82.419	ENSLACG00000012295	GFM1	99	81.965	Latimeria_chalumnae
ENSCVAG00000004126	gfm1	99	78.741	ENSLOCG00000003778	gfm1	99	80.441	Lepisosteus_oculatus
ENSCVAG00000004126	gfm1	99	79.466	ENSLAFG00000010945	GFM1	99	79.306	Loxodonta_africana
ENSCVAG00000004126	gfm1	99	81.127	ENSMFAG00000035731	GFM1	99	80.563	Macaca_fascicularis
ENSCVAG00000004126	gfm1	99	81.127	ENSMMUG00000004961	GFM1	99	80.563	Macaca_mulatta
ENSCVAG00000004126	gfm1	99	80.986	ENSMNEG00000033245	GFM1	99	80.563	Macaca_nemestrina
ENSCVAG00000004126	gfm1	99	79.437	ENSMLEG00000030908	GFM1	99	80.408	Mandrillus_leucophaeus
ENSCVAG00000004126	gfm1	100	91.176	ENSMAMG00000011760	gfm1	100	91.176	Mastacembelus_armatus
ENSCVAG00000004126	gfm1	100	93.182	ENSMZEG00005016639	gfm1	100	93.182	Maylandia_zebra
ENSCVAG00000004126	gfm1	99	80.423	ENSMGAG00000010641	GFM1	97	81.780	Meleagris_gallopavo
ENSCVAG00000004126	gfm1	99	81.690	ENSMAUG00000000611	Gfm1	96	82.778	Mesocricetus_auratus
ENSCVAG00000004126	gfm1	99	81.294	ENSMICG00000049086	GFM1	96	82.802	Microcebus_murinus
ENSCVAG00000004126	gfm1	99	81.831	ENSMOCG00000000465	Gfm1	99	80.965	Microtus_ochrogaster
ENSCVAG00000004126	gfm1	99	89.231	ENSMMOG00000012538	gfm1	98	90.909	Mola_mola
ENSCVAG00000004126	gfm1	99	79.944	ENSMODG00000015673	GFM1	99	79.755	Monodelphis_domestica
ENSCVAG00000004126	gfm1	100	88.671	ENSMALG00000012508	gfm1	95	90.363	Monopterus_albus
ENSCVAG00000004126	gfm1	99	81.972	MGP_CAROLIEiJ_G0025052	Gfm1	100	79.963	Mus_caroli
ENSCVAG00000004126	gfm1	99	81.690	ENSMUSG00000027774	Gfm1	99	80.563	Mus_musculus
ENSCVAG00000004126	gfm1	99	81.127	MGP_PahariEiJ_G0026495	Gfm1	100	79.213	Mus_pahari
ENSCVAG00000004126	gfm1	99	81.690	MGP_SPRETEiJ_G0025994	Gfm1	100	79.588	Mus_spretus
ENSCVAG00000004126	gfm1	99	81.831	ENSMPUG00000002859	GFM1	96	83.079	Mustela_putorius_furo
ENSCVAG00000004126	gfm1	99	81.294	ENSMLUG00000000452	GFM1	96	82.663	Myotis_lucifugus
ENSCVAG00000004126	gfm1	99	80.818	ENSNGAG00000012375	Gfm1	99	80.000	Nannospalax_galili
ENSCVAG00000004126	gfm1	100	91.899	ENSNBRG00000004631	gfm1	99	93.544	Neolamprologus_brichardi
ENSCVAG00000004126	gfm1	99	81.268	ENSNLEG00000004176	GFM1	99	80.697	Nomascus_leucogenys
ENSCVAG00000004126	gfm1	93	72.214	ENSMEUG00000007784	GFM1	99	72.353	Notamacropus_eugenii
ENSCVAG00000004126	gfm1	99	80.028	ENSOPRG00000009860	GFM1	99	79.839	Ochotona_princeps
ENSCVAG00000004126	gfm1	99	81.716	ENSODEG00000004316	GFM1	99	80.774	Octodon_degus
ENSCVAG00000004126	gfm1	100	93.583	ENSONIG00000003772	gfm1	100	93.583	Oreochromis_niloticus
ENSCVAG00000004126	gfm1	99	81.857	ENSOCUG00000013561	GFM1	98	81.402	Oryctolagus_cuniculus
ENSCVAG00000004126	gfm1	99	90.254	ENSORLG00000006487	gfm1	100	92.232	Oryzias_latipes
ENSCVAG00000004126	gfm1	100	91.444	ENSORLG00020003362	gfm1	100	91.444	Oryzias_latipes_hni
ENSCVAG00000004126	gfm1	100	91.176	ENSORLG00015005829	gfm1	100	91.176	Oryzias_latipes_hsok
ENSCVAG00000004126	gfm1	100	92.380	ENSOMEG00000012894	gfm1	100	92.380	Oryzias_melastigma
ENSCVAG00000004126	gfm1	99	80.450	ENSOGAG00000008298	GFM1	96	81.969	Otolemur_garnettii
ENSCVAG00000004126	gfm1	99	80.505	ENSOARG00000002409	GFM1	98	82.263	Ovis_aries
ENSCVAG00000004126	gfm1	99	81.268	ENSPPAG00000033881	GFM1	99	80.697	Pan_paniscus
ENSCVAG00000004126	gfm1	99	81.435	ENSPPRG00000009281	GFM1	99	80.908	Panthera_pardus
ENSCVAG00000004126	gfm1	99	81.294	ENSPTIG00000012416	GFM1	99	80.774	Panthera_tigris_altaica
ENSCVAG00000004126	gfm1	99	81.268	ENSPTRG00000015570	GFM1	99	80.697	Pan_troglodytes
ENSCVAG00000004126	gfm1	99	80.986	ENSPANG00000016512	GFM1	99	80.563	Papio_anubis
ENSCVAG00000004126	gfm1	99	84.926	ENSPKIG00000004876	gfm1	99	84.926	Paramormyrops_kingsleyae
ENSCVAG00000004126	gfm1	99	82.254	ENSPSIG00000012567	GFM1	99	81.586	Pelodiscus_sinensis
ENSCVAG00000004126	gfm1	100	87.187	ENSPMGG00000014068	gfm1	100	88.690	Periophthalmus_magnuspinnatus
ENSCVAG00000004126	gfm1	99	81.690	ENSPEMG00000008942	Gfm1	99	80.697	Peromyscus_maniculatus_bairdii
ENSCVAG00000004126	gfm1	89	79.266	ENSPCIG00000020195	GFM1	95	81.475	Phascolarctos_cinereus
ENSCVAG00000004126	gfm1	100	94.652	ENSPFOG00000011022	gfm1	100	94.652	Poecilia_formosa
ENSCVAG00000004126	gfm1	100	92.877	ENSPLAG00000019585	gfm1	100	94.382	Poecilia_latipinna
ENSCVAG00000004126	gfm1	100	94.519	ENSPMEG00000012376	gfm1	100	94.519	Poecilia_mexicana
ENSCVAG00000004126	gfm1	100	94.652	ENSPREG00000001332	gfm1	95	94.652	Poecilia_reticulata
ENSCVAG00000004126	gfm1	99	81.127	ENSPPYG00000014244	GFM1	99	80.563	Pongo_abelii
ENSCVAG00000004126	gfm1	98	78.378	ENSPCAG00000008934	GFM1	100	80.085	Procavia_capensis
ENSCVAG00000004126	gfm1	99	81.153	ENSPCOG00000022259	GFM1	99	80.641	Propithecus_coquereli
ENSCVAG00000004126	gfm1	99	80.704	ENSPVAG00000013605	GFM1	96	81.969	Pteropus_vampyrus
ENSCVAG00000004126	gfm1	100	92.914	ENSPNYG00000006037	gfm1	100	92.914	Pundamilia_nyererei
ENSCVAG00000004126	gfm1	100	87.166	ENSPNAG00000001237	gfm1	100	87.166	Pygocentrus_nattereri
ENSCVAG00000004126	gfm1	99	81.690	ENSRNOG00000012873	Gfm1	96	82.639	Rattus_norvegicus
ENSCVAG00000004126	gfm1	99	80.986	ENSRBIG00000031363	GFM1	99	80.563	Rhinopithecus_bieti
ENSCVAG00000004126	gfm1	99	81.127	ENSRROG00000031081	GFM1	99	80.697	Rhinopithecus_roxellana
ENSCVAG00000004126	gfm1	96	56.691	YLR069C	-	90	57.554	Saccharomyces_cerevisiae
ENSCVAG00000004126	gfm1	99	81.549	ENSSBOG00000023252	GFM1	99	80.831	Saimiri_boliviensis_boliviensis
ENSCVAG00000004126	gfm1	99	81.215	ENSSHAG00000017772	GFM1	96	82.173	Sarcophilus_harrisii
ENSCVAG00000004126	gfm1	99	84.543	ENSSFOG00015003117	gfm1	99	84.680	Scleropages_formosus
ENSCVAG00000004126	gfm1	100	89.840	ENSSMAG00000013221	gfm1	100	89.840	Scophthalmus_maximus
ENSCVAG00000004126	gfm1	100	92.246	ENSSDUG00000018665	gfm1	100	92.246	Seriola_dumerili
ENSCVAG00000004126	gfm1	100	92.112	ENSSLDG00000020606	gfm1	100	92.112	Seriola_lalandi_dorsalis
ENSCVAG00000004126	gfm1	99	78.732	ENSSPUG00000018686	GFM1	99	78.883	Sphenodon_punctatus
ENSCVAG00000004126	gfm1	100	93.182	ENSSPAG00000008800	gfm1	100	93.182	Stegastes_partitus
ENSCVAG00000004126	gfm1	99	80.423	ENSSSCG00000025651	GFM1	95	81.667	Sus_scrofa
ENSCVAG00000004126	gfm1	100	87.968	ENSTRUG00000009244	gfm1	100	87.968	Takifugu_rubripes
ENSCVAG00000004126	gfm1	100	89.572	ENSTNIG00000007729	gfm1	100	89.572	Tetraodon_nigroviridis
ENSCVAG00000004126	gfm1	93	72.239	ENSTBEG00000017404	GFM1	89	74.179	Tupaia_belangeri
ENSCVAG00000004126	gfm1	99	81.268	ENSTTRG00000001735	GFM1	95	82.361	Tursiops_truncatus
ENSCVAG00000004126	gfm1	99	81.575	ENSUAMG00000026381	GFM1	99	80.908	Ursus_americanus
ENSCVAG00000004126	gfm1	99	81.575	ENSUMAG00000011268	GFM1	96	82.940	Ursus_maritimus
ENSCVAG00000004126	gfm1	99	77.887	ENSVPAG00000009444	GFM1	96	79.167	Vicugna_pacos
ENSCVAG00000004126	gfm1	99	81.575	ENSVVUG00000020091	GFM1	99	82.563	Vulpes_vulpes
ENSCVAG00000004126	gfm1	99	83.099	ENSXETG00000032551	GFM1	99	81.660	Xenopus_tropicalis
ENSCVAG00000004126	gfm1	54	93.506	ENSXCOG00000012590	gfm1	93	90.819	Xiphophorus_couchianus
ENSCVAG00000004126	gfm1	100	94.786	ENSXMAG00000000261	gfm1	100	94.786	Xiphophorus_maculatus