EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000004280 (Gene tree)
Gene ID: -
Gene Symbol: hnrnpub
Alias: hnrnpu|hnrpu|wu:fa66f11|wu:fc18b08|wu:fi89c08|zgc:111835|zgc:136480
Full Name: heterogeneous nuclear ribonucleoprotein U-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 10197 bases
Position: chrKL653063.1:209362-219558
Accession: 107095679
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000021868	SAP	PF02037.27	1.8e-11	1	1
ENSCVAP00000002952	SAP	PF02037.27	2.2e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000010865	-	2244	-	ENSCVAP00000002952	747 (aa)	-	-
ENSCVAT00000010902	-	1647	-	ENSCVAP00000002934	548 (aa)	-	-
ENSCVAT00000010716	-	1908	XM_015391891	ENSCVAP00000021868	635 (aa)	XP_015247377	-
ENSCVAT00000010916	-	1428	-	ENSCVAP00000021784	475 (aa)	-	-

Gene Model

Click here to download ENSCVAG00000004280's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000004280's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000004280	hnrnpub	99	40.089	ENSCVAG00000009524	-	70	55.072
ENSCVAG00000004280	hnrnpub	86	30.972	ENSCVAG00000006862	si:ch211-107m4.1	89	30.948

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000004280	hnrnpub	85	71.429	ENSG00000153187	HNRNPU	99	63.087	Homo_sapiens
ENSCVAG00000004280	hnrnpub	92	100.000	ENSAPOG00000017400	hnrnpub	89	86.792	Acanthochromis_polyacanthus
ENSCVAG00000004280	hnrnpub	85	71.429	ENSAMEG00000009145	HNRNPU	79	71.429	Ailuropoda_melanoleuca
ENSCVAG00000004280	hnrnpub	100	71.837	ENSACIG00000012138	hnrnpub	97	74.346	Amphilophus_citrinellus
ENSCVAG00000004280	hnrnpub	100	74.919	ENSAOCG00000015843	hnrnpub	89	84.906	Amphiprion_ocellaris
ENSCVAG00000004280	hnrnpub	100	74.919	ENSAPEG00000014679	hnrnpub	89	84.906	Amphiprion_percula
ENSCVAG00000004280	hnrnpub	94	69.307	ENSATEG00000016178	hnrnpub	90	81.081	Anabas_testudineus
ENSCVAG00000004280	hnrnpub	86	68.750	ENSACAG00000004511	HNRNPU	78	67.347	Anolis_carolinensis
ENSCVAG00000004280	hnrnpub	85	71.429	ENSANAG00000033895	-	82	71.429	Aotus_nancymaae
ENSCVAG00000004280	hnrnpub	100	70.809	ENSACLG00000008165	hnrnpub	90	79.630	Astatotilapia_calliptera
ENSCVAG00000004280	hnrnpub	85	71.429	ENSBTAG00000007606	HNRNPU	79	71.429	Bos_taurus
ENSCVAG00000004280	hnrnpub	85	71.429	ENSCJAG00000016914	HNRNPU	79	71.429	Callithrix_jacchus
ENSCVAG00000004280	hnrnpub	85	71.429	ENSCAFG00020000918	HNRNPU	81	71.429	Canis_lupus_dingo
ENSCVAG00000004280	hnrnpub	78	51.821	ENSCHIG00000004900	HNRNPU	81	71.429	Capra_hircus
ENSCVAG00000004280	hnrnpub	85	73.214	ENSCPOG00000011887	HNRNPU	79	73.214	Cavia_porcellus
ENSCVAG00000004280	hnrnpub	85	71.429	ENSCCAG00000037859	-	82	71.429	Cebus_capucinus
ENSCVAG00000004280	hnrnpub	85	71.429	ENSCATG00000035273	HNRNPU	82	71.429	Cercocebus_atys
ENSCVAG00000004280	hnrnpub	85	73.214	ENSCLAG00000007100	HNRNPU	79	73.214	Chinchilla_lanigera
ENSCVAG00000004280	hnrnpub	85	71.429	ENSCSAG00000009219	HNRNPU	81	71.429	Chlorocebus_sabaeus
ENSCVAG00000004280	hnrnpub	85	71.429	ENSCHOG00000001387	HNRNPU	77	71.429	Choloepus_hoffmanni
ENSCVAG00000004280	hnrnpub	95	50.512	ENSCPBG00000009415	HNRNPU	78	69.492	Chrysemys_picta_bellii
ENSCVAG00000004280	hnrnpub	85	71.429	ENSCANG00000022780	HNRNPU	78	71.429	Colobus_angolensis_palliatus
ENSCVAG00000004280	hnrnpub	85	71.429	ENSCGRG00001020525	Hnrnpu	81	71.429	Cricetulus_griseus_chok1gshd
ENSCVAG00000004280	hnrnpub	90	79.365	ENSCSEG00000010804	hnrnpub	99	69.116	Cynoglossus_semilaevis
ENSCVAG00000004280	hnrnpub	100	51.828	ENSDARG00000015206	hnrnpua	92	54.430	Danio_rerio
ENSCVAG00000004280	hnrnpub	100	55.111	ENSDARG00000004735	hnrnpub	94	55.453	Danio_rerio
ENSCVAG00000004280	hnrnpub	99	46.972	ENSDNOG00000000215	HNRNPU	88	78.261	Dasypus_novemcinctus
ENSCVAG00000004280	hnrnpub	77	71.186	ENSDORG00000015491	Hnrnpu	92	47.082	Dipodomys_ordii
ENSCVAG00000004280	hnrnpub	85	71.429	ENSETEG00000014565	HNRNPU	79	71.429	Echinops_telfairi
ENSCVAG00000004280	hnrnpub	78	50.505	ENSEASG00005003017	HNRNPU	81	71.429	Equus_asinus_asinus
ENSCVAG00000004280	hnrnpub	78	50.337	ENSECAG00000007955	HNRNPU	81	71.429	Equus_caballus
ENSCVAG00000004280	hnrnpub	100	64.480	ENSELUG00000010733	hnrnpub	91	66.079	Esox_lucius
ENSCVAG00000004280	hnrnpub	100	53.984	ENSELUG00000011966	hnrnpua	100	51.591	Esox_lucius
ENSCVAG00000004280	hnrnpub	85	71.429	ENSFCAG00000002156	HNRNPU	80	71.429	Felis_catus
ENSCVAG00000004280	hnrnpub	89	73.214	ENSFDAG00000006026	HNRNPU	99	73.214	Fukomys_damarensis
ENSCVAG00000004280	hnrnpub	96	84.142	ENSFHEG00000022639	hnrnpub	88	82.282	Fundulus_heteroclitus
ENSCVAG00000004280	hnrnpub	100	65.066	ENSGMOG00000001755	hnrnpub	93	66.076	Gadus_morhua
ENSCVAG00000004280	hnrnpub	89	57.647	ENSGALG00000010671	HNRNPU	77	72.414	Gallus_gallus
ENSCVAG00000004280	hnrnpub	100	80.635	ENSGAFG00000009369	hnrnpub	93	76.366	Gambusia_affinis
ENSCVAG00000004280	hnrnpub	100	69.722	ENSGACG00000004679	hnrnpub	94	69.467	Gasterosteus_aculeatus
ENSCVAG00000004280	hnrnpub	85	71.429	ENSGGOG00000004061	HNRNPU	82	71.429	Gorilla_gorilla
ENSCVAG00000004280	hnrnpub	100	70.954	ENSHBUG00000012290	hnrnpub	90	81.481	Haplochromis_burtoni
ENSCVAG00000004280	hnrnpub	85	73.214	ENSHGLG00000010594	-	82	73.214	Heterocephalus_glaber_female
ENSCVAG00000004280	hnrnpub	91	73.214	ENSHGLG00100015093	HNRNPU	99	73.214	Heterocephalus_glaber_male
ENSCVAG00000004280	hnrnpub	80	90.000	ENSHCOG00000020091	hnrnpub	71	82.353	Hippocampus_comes
ENSCVAG00000004280	hnrnpub	81	89.362	ENSIPUG00000007749	hnrnpu	80	81.481	Ictalurus_punctatus
ENSCVAG00000004280	hnrnpub	85	71.429	ENSJJAG00000011371	Hnrnpu	80	71.429	Jaculus_jaculus
ENSCVAG00000004280	hnrnpub	100	74.661	ENSKMAG00000004532	hnrnpub	87	93.617	Kryptolebias_marmoratus
ENSCVAG00000004280	hnrnpub	91	77.551	ENSLBEG00000022520	hnrnpub	89	80.357	Labrus_bergylta
ENSCVAG00000004280	hnrnpub	93	67.857	ENSLACG00000017463	HNRNPU	81	67.857	Latimeria_chalumnae
ENSCVAG00000004280	hnrnpub	90	91.489	ENSLOCG00000016652	hnrnpua	80	87.755	Lepisosteus_oculatus
ENSCVAG00000004280	hnrnpub	85	71.429	ENSLAFG00000021377	HNRNPU	82	71.429	Loxodonta_africana
ENSCVAG00000004280	hnrnpub	85	71.429	ENSMFAG00000037308	HNRNPU	82	71.429	Macaca_fascicularis
ENSCVAG00000004280	hnrnpub	85	71.429	ENSMMUG00000021098	HNRNPU	82	71.429	Macaca_mulatta
ENSCVAG00000004280	hnrnpub	85	71.429	ENSMNEG00000043645	HNRNPU	82	71.429	Macaca_nemestrina
ENSCVAG00000004280	hnrnpub	95	71.204	ENSMAMG00000007196	hnrnpub	93	80.357	Mastacembelus_armatus
ENSCVAG00000004280	hnrnpub	100	70.809	ENSMZEG00005003185	hnrnpub	90	81.481	Maylandia_zebra
ENSCVAG00000004280	hnrnpub	89	71.429	ENSMAUG00000008842	Hnrnpu	81	71.429	Mesocricetus_auratus
ENSCVAG00000004280	hnrnpub	85	71.429	ENSMICG00000004616	HNRNPU	82	71.429	Microcebus_murinus
ENSCVAG00000004280	hnrnpub	89	71.429	ENSMOCG00000015623	Hnrnpu	82	71.429	Microtus_ochrogaster
ENSCVAG00000004280	hnrnpub	85	67.857	ENSMODG00000006515	HNRNPU	78	67.857	Monodelphis_domestica
ENSCVAG00000004280	hnrnpub	95	70.323	ENSMALG00000018243	hnrnpub	95	70.687	Monopterus_albus
ENSCVAG00000004280	hnrnpub	85	71.429	MGP_CAROLIEiJ_G0014962	Hnrnpu	82	71.429	Mus_caroli
ENSCVAG00000004280	hnrnpub	85	71.429	ENSMUSG00000039630	Hnrnpu	82	71.429	Mus_musculus
ENSCVAG00000004280	hnrnpub	85	71.429	MGP_PahariEiJ_G0028193	Hnrnpu	82	71.429	Mus_pahari
ENSCVAG00000004280	hnrnpub	85	71.429	MGP_SPRETEiJ_G0015761	Hnrnpu	82	71.429	Mus_spretus
ENSCVAG00000004280	hnrnpub	85	69.643	ENSMLUG00000000475	HNRNPU	81	69.643	Myotis_lucifugus
ENSCVAG00000004280	hnrnpub	74	71.429	ENSNGAG00000019075	Hnrnpu	76	55.172	Nannospalax_galili
ENSCVAG00000004280	hnrnpub	100	70.665	ENSNBRG00000017855	hnrnpub	92	81.481	Neolamprologus_brichardi
ENSCVAG00000004280	hnrnpub	85	67.857	ENSMEUG00000000541	HNRNPU	78	67.857	Notamacropus_eugenii
ENSCVAG00000004280	hnrnpub	95	70.201	ENSONIG00000001260	hnrnpub	92	81.481	Oreochromis_niloticus
ENSCVAG00000004280	hnrnpub	83	71.429	ENSOCUG00000014469	HNRNPU	73	71.429	Oryctolagus_cuniculus
ENSCVAG00000004280	hnrnpub	100	73.002	ENSORLG00000016114	hnrnpub	88	76.786	Oryzias_latipes
ENSCVAG00000004280	hnrnpub	100	73.605	ENSORLG00020005363	hnrnpub	88	76.786	Oryzias_latipes_hni
ENSCVAG00000004280	hnrnpub	100	73.645	ENSORLG00015001190	hnrnpub	88	76.786	Oryzias_latipes_hsok
ENSCVAG00000004280	hnrnpub	100	81.667	ENSOMEG00000014951	hnrnpub	88	76.786	Oryzias_melastigma
ENSCVAG00000004280	hnrnpub	85	71.429	ENSOGAG00000014024	HNRNPU	81	71.429	Otolemur_garnettii
ENSCVAG00000004280	hnrnpub	85	71.429	ENSOARG00000004985	HNRNPU	88	71.429	Ovis_aries
ENSCVAG00000004280	hnrnpub	85	71.429	ENSPPAG00000038652	HNRNPU	82	71.429	Pan_paniscus
ENSCVAG00000004280	hnrnpub	85	71.429	ENSPPRG00000002662	HNRNPU	79	71.429	Panthera_pardus
ENSCVAG00000004280	hnrnpub	85	71.429	ENSPTRG00000002182	HNRNPU	82	71.429	Pan_troglodytes
ENSCVAG00000004280	hnrnpub	85	71.429	ENSPANG00000011643	HNRNPU	82	71.429	Papio_anubis
ENSCVAG00000004280	hnrnpub	100	53.210	ENSPKIG00000022332	hnrnpub	92	58.277	Paramormyrops_kingsleyae
ENSCVAG00000004280	hnrnpub	100	52.638	ENSPKIG00000006885	hnrnpua	92	75.926	Paramormyrops_kingsleyae
ENSCVAG00000004280	hnrnpub	85	67.857	ENSPCIG00000008657	HNRNPU	78	67.857	Phascolarctos_cinereus
ENSCVAG00000004280	hnrnpub	100	82.573	ENSPFOG00000002908	hnrnpub	92	77.302	Poecilia_formosa
ENSCVAG00000004280	hnrnpub	100	82.736	ENSPLAG00000004160	hnrnpub	92	77.633	Poecilia_latipinna
ENSCVAG00000004280	hnrnpub	76	50.257	ENSPCOG00000003883	-	83	69.643	Propithecus_coquereli
ENSCVAG00000004280	hnrnpub	85	71.429	ENSPCOG00000018655	-	80	71.429	Propithecus_coquereli
ENSCVAG00000004280	hnrnpub	85	71.429	ENSPVAG00000002581	HNRNPU	79	71.429	Pteropus_vampyrus
ENSCVAG00000004280	hnrnpub	100	70.954	ENSPNYG00000021642	hnrnpub	92	81.481	Pundamilia_nyererei
ENSCVAG00000004280	hnrnpub	100	51.961	ENSPNAG00000001055	hnrnpub	89	73.585	Pygocentrus_nattereri
ENSCVAG00000004280	hnrnpub	93	71.429	ENSRNOG00000033790	Hnrnpu	82	71.429	Rattus_norvegicus
ENSCVAG00000004280	hnrnpub	94	50.772	ENSRBIG00000031519	HNRNPU	82	71.429	Rhinopithecus_bieti
ENSCVAG00000004280	hnrnpub	85	71.429	ENSRROG00000041642	HNRNPU	81	71.429	Rhinopithecus_roxellana
ENSCVAG00000004280	hnrnpub	100	53.761	ENSSFOG00015001124	hnrnpub	85	75.806	Scleropages_formosus
ENSCVAG00000004280	hnrnpub	100	53.580	ENSSFOG00015019004	hnrnpu	75	89.362	Scleropages_formosus
ENSCVAG00000004280	hnrnpub	83	100.000	ENSSMAG00000003607	hnrnpub	90	73.016	Scophthalmus_maximus
ENSCVAG00000004280	hnrnpub	100	74.598	ENSSDUG00000005912	hnrnpub	89	86.792	Seriola_dumerili
ENSCVAG00000004280	hnrnpub	100	73.920	ENSSLDG00000004899	hnrnpub	92	86.792	Seriola_lalandi_dorsalis
ENSCVAG00000004280	hnrnpub	83	82.927	ENSSPUG00000011393	HNRNPU	78	71.930	Sphenodon_punctatus
ENSCVAG00000004280	hnrnpub	100	74.351	ENSSPAG00000011853	hnrnpub	89	86.792	Stegastes_partitus
ENSCVAG00000004280	hnrnpub	85	71.429	ENSSSCG00000010877	HNRNPU	81	71.429	Sus_scrofa
ENSCVAG00000004280	hnrnpub	97	95.833	ENSTRUG00000007759	hnrnpub	88	86.275	Takifugu_rubripes
ENSCVAG00000004280	hnrnpub	95	64.901	ENSTNIG00000009725	hnrnpub	79	83.019	Tetraodon_nigroviridis
ENSCVAG00000004280	hnrnpub	85	71.429	ENSUAMG00000021120	HNRNPU	79	71.429	Ursus_americanus
ENSCVAG00000004280	hnrnpub	85	64.912	ENSUMAG00000012322	HNRNPU	86	64.912	Ursus_maritimus
ENSCVAG00000004280	hnrnpub	72	71.429	ENSVPAG00000010520	HNRNPU	64	71.429	Vicugna_pacos
ENSCVAG00000004280	hnrnpub	85	71.429	ENSVVUG00000026524	HNRNPU	81	71.429	Vulpes_vulpes
ENSCVAG00000004280	hnrnpub	83	85.000	ENSXETG00000011386	hnrnpu	81	82.222	Xenopus_tropicalis
ENSCVAG00000004280	hnrnpub	100	79.739	ENSXMAG00000010356	hnrnpub	97	74.629	Xiphophorus_maculatus