EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000004560 (Gene tree)
Gene ID: 107092769
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 9118 bases
Position: chrKL652893.1:209332-218449
Accession: 107092769
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000003352	PRP21_like_P	PF12230.8	1.6e-51	1	1
ENSCVAP00000003352	Surp	PF01805.20	6.3e-46	1	2
ENSCVAP00000003352	Surp	PF01805.20	6.3e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000010182	-	3594	XM_015387420	ENSCVAP00000003352	784 (aa)	XP_015242906	UPI000742767C

Gene Model

Click here to download ENSCVAG00000004560's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000004560's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000004560	sf3a1	98	84.375	ENSG00000099995	SF3A1	100	83.145	Homo_sapiens
ENSCVAG00000004560	sf3a1	100	93.266	ENSAPOG00000020465	sf3a1	100	93.266	Acanthochromis_polyacanthus
ENSCVAG00000004560	sf3a1	98	84.245	ENSAMEG00000007737	SF3A1	100	82.685	Ailuropoda_melanoleuca
ENSCVAG00000004560	sf3a1	100	93.393	ENSACIG00000020672	sf3a1	100	93.393	Amphilophus_citrinellus
ENSCVAG00000004560	sf3a1	100	92.884	ENSAOCG00000003060	sf3a1	100	92.884	Amphiprion_ocellaris
ENSCVAG00000004560	sf3a1	100	93.011	ENSAPEG00000010735	sf3a1	100	93.011	Amphiprion_percula
ENSCVAG00000004560	sf3a1	97	93.203	ENSATEG00000021201	sf3a1	98	92.258	Anabas_testudineus
ENSCVAG00000004560	sf3a1	96	82.982	ENSAPLG00000009057	SF3A1	99	83.721	Anas_platyrhynchos
ENSCVAG00000004560	sf3a1	100	79.506	ENSACAG00000009415	SF3A1	100	80.247	Anolis_carolinensis
ENSCVAG00000004560	sf3a1	98	84.245	ENSANAG00000032045	SF3A1	100	82.893	Aotus_nancymaae
ENSCVAG00000004560	sf3a1	100	92.249	ENSACLG00000012622	sf3a1	100	93.139	Astatotilapia_calliptera
ENSCVAG00000004560	sf3a1	99	86.514	ENSAMXG00000005382	sf3a1	99	87.150	Astyanax_mexicanus
ENSCVAG00000004560	sf3a1	98	84.245	ENSBTAG00000003390	SF3A1	100	83.019	Bos_taurus
ENSCVAG00000004560	sf3a1	81	44.653	WBGene00004188	prp-21	99	41.443	Caenorhabditis_elegans
ENSCVAG00000004560	sf3a1	98	84.115	ENSCJAG00000010370	SF3A1	100	82.893	Callithrix_jacchus
ENSCVAG00000004560	sf3a1	98	84.245	ENSCAFG00000012559	SF3A1	100	83.019	Canis_familiaris
ENSCVAG00000004560	sf3a1	98	84.245	ENSCAFG00020000838	SF3A1	100	83.019	Canis_lupus_dingo
ENSCVAG00000004560	sf3a1	98	84.375	ENSCHIG00000018642	SF3A1	100	83.145	Capra_hircus
ENSCVAG00000004560	sf3a1	98	84.375	ENSTSYG00000004739	SF3A1	100	83.145	Carlito_syrichta
ENSCVAG00000004560	sf3a1	95	67.287	ENSCAPG00000015414	SF3A1	98	67.553	Cavia_aperea
ENSCVAG00000004560	sf3a1	99	83.077	ENSCPOG00000014589	SF3A1	100	82.767	Cavia_porcellus
ENSCVAG00000004560	sf3a1	98	84.245	ENSCCAG00000032006	SF3A1	100	82.893	Cebus_capucinus
ENSCVAG00000004560	sf3a1	98	84.375	ENSCATG00000029241	SF3A1	100	83.145	Cercocebus_atys
ENSCVAG00000004560	sf3a1	98	84.115	ENSCLAG00000006508	SF3A1	100	83.019	Chinchilla_lanigera
ENSCVAG00000004560	sf3a1	98	84.375	ENSCSAG00000009470	SF3A1	100	83.145	Chlorocebus_sabaeus
ENSCVAG00000004560	sf3a1	58	89.057	ENSCHOG00000005201	SF3A1	65	89.057	Choloepus_hoffmanni
ENSCVAG00000004560	sf3a1	100	80.429	ENSCPBG00000007595	SF3A1	100	82.346	Chrysemys_picta_bellii
ENSCVAG00000004560	sf3a1	97	52.363	ENSCING00000008526	-	98	52.025	Ciona_intestinalis
ENSCVAG00000004560	sf3a1	93	61.404	ENSCSAVG00000005608	-	100	50.708	Ciona_savignyi
ENSCVAG00000004560	sf3a1	98	84.375	ENSCANG00000033564	SF3A1	100	83.145	Colobus_angolensis_palliatus
ENSCVAG00000004560	sf3a1	97	84.342	ENSCGRG00001008933	Sf3a1	100	82.767	Cricetulus_griseus_chok1gshd
ENSCVAG00000004560	sf3a1	97	84.342	ENSCGRG00000006127	Sf3a1	100	82.767	Cricetulus_griseus_crigri
ENSCVAG00000004560	sf3a1	100	88.959	ENSCSEG00000010792	sf3a1	100	88.959	Cynoglossus_semilaevis
ENSCVAG00000004560	sf3a1	100	84.442	ENSDARG00000041887	sf3a1	100	88.701	Danio_rerio
ENSCVAG00000004560	sf3a1	98	84.265	ENSDNOG00000010629	SF3A1	100	82.789	Dasypus_novemcinctus
ENSCVAG00000004560	sf3a1	98	84.245	ENSDORG00000005613	Sf3a1	100	83.019	Dipodomys_ordii
ENSCVAG00000004560	sf3a1	84	61.017	FBgn0266917	Sf3a1	97	50.371	Drosophila_melanogaster
ENSCVAG00000004560	sf3a1	85	82.609	ENSETEG00000017194	SF3A1	95	83.259	Echinops_telfairi
ENSCVAG00000004560	sf3a1	97	67.611	ENSEBUG00000001285	sf3a1	96	69.042	Eptatretus_burgeri
ENSCVAG00000004560	sf3a1	98	84.245	ENSEASG00005010254	SF3A1	100	82.893	Equus_asinus_asinus
ENSCVAG00000004560	sf3a1	98	84.245	ENSECAG00000023962	SF3A1	100	82.893	Equus_caballus
ENSCVAG00000004560	sf3a1	74	88.525	ENSEEUG00000003159	SF3A1	83	88.525	Erinaceus_europaeus
ENSCVAG00000004560	sf3a1	100	85.425	ENSELUG00000022578	sf3a1	100	86.439	Esox_lucius
ENSCVAG00000004560	sf3a1	98	83.984	ENSFCAG00000011932	SF3A1	100	82.767	Felis_catus
ENSCVAG00000004560	sf3a1	96	81.481	ENSFALG00000006944	SF3A1	100	82.116	Ficedula_albicollis
ENSCVAG00000004560	sf3a1	98	84.245	ENSFDAG00000009560	SF3A1	100	83.019	Fukomys_damarensis
ENSCVAG00000004560	sf3a1	100	94.529	ENSFHEG00000010866	sf3a1	100	94.529	Fundulus_heteroclitus
ENSCVAG00000004560	sf3a1	100	86.497	ENSGMOG00000016024	sf3a1	100	86.369	Gadus_morhua
ENSCVAG00000004560	sf3a1	96	83.091	ENSGALG00000007937	SF3A1	100	82.620	Gallus_gallus
ENSCVAG00000004560	sf3a1	100	95.281	ENSGAFG00000009111	sf3a1	100	95.281	Gambusia_affinis
ENSCVAG00000004560	sf3a1	100	88.354	ENSGACG00000011893	sf3a1	100	88.481	Gasterosteus_aculeatus
ENSCVAG00000004560	sf3a1	96	79.974	ENSGAGG00000000762	SF3A1	99	81.711	Gopherus_agassizii
ENSCVAG00000004560	sf3a1	98	84.375	ENSGGOG00000012631	SF3A1	100	83.145	Gorilla_gorilla
ENSCVAG00000004560	sf3a1	100	93.520	ENSHBUG00000015795	sf3a1	100	93.266	Haplochromis_burtoni
ENSCVAG00000004560	sf3a1	99	83.077	ENSHGLG00000007907	SF3A1	100	82.893	Heterocephalus_glaber_female
ENSCVAG00000004560	sf3a1	99	83.077	ENSHGLG00100013799	SF3A1	100	82.893	Heterocephalus_glaber_male
ENSCVAG00000004560	sf3a1	100	88.535	ENSHCOG00000015423	sf3a1	100	88.153	Hippocampus_comes
ENSCVAG00000004560	sf3a1	98	84.197	ENSIPUG00000002470	sf3a1	99	84.974	Ictalurus_punctatus
ENSCVAG00000004560	sf3a1	97	84.224	ENSSTOG00000013892	SF3A1	100	83.019	Ictidomys_tridecemlineatus
ENSCVAG00000004560	sf3a1	98	84.115	ENSJJAG00000022566	Sf3a1	100	82.915	Jaculus_jaculus
ENSCVAG00000004560	sf3a1	100	92.376	ENSKMAG00000002400	sf3a1	100	92.376	Kryptolebias_marmoratus
ENSCVAG00000004560	sf3a1	100	91.465	ENSLBEG00000022974	sf3a1	100	91.210	Labrus_bergylta
ENSCVAG00000004560	sf3a1	100	82.360	ENSLACG00000003565	SF3A1	100	82.532	Latimeria_chalumnae
ENSCVAG00000004560	sf3a1	100	85.841	ENSLOCG00000008251	sf3a1	99	86.473	Lepisosteus_oculatus
ENSCVAG00000004560	sf3a1	99	53.942	ENSLAFG00000026032	-	99	53.817	Loxodonta_africana
ENSCVAG00000004560	sf3a1	98	84.245	ENSLAFG00000000448	SF3A1	100	83.019	Loxodonta_africana
ENSCVAG00000004560	sf3a1	98	84.245	ENSMFAG00000031979	SF3A1	100	83.019	Macaca_fascicularis
ENSCVAG00000004560	sf3a1	98	84.245	ENSMMUG00000005547	SF3A1	100	83.019	Macaca_mulatta
ENSCVAG00000004560	sf3a1	98	84.375	ENSMNEG00000037229	SF3A1	100	83.145	Macaca_nemestrina
ENSCVAG00000004560	sf3a1	98	84.375	ENSMLEG00000041908	SF3A1	100	83.145	Mandrillus_leucophaeus
ENSCVAG00000004560	sf3a1	98	92.208	ENSMAMG00000006460	sf3a1	96	92.208	Mastacembelus_armatus
ENSCVAG00000004560	sf3a1	100	92.249	ENSMZEG00005009633	sf3a1	100	93.139	Maylandia_zebra
ENSCVAG00000004560	sf3a1	96	83.091	ENSMGAG00000001330	SF3A1	99	83.700	Meleagris_gallopavo
ENSCVAG00000004560	sf3a1	93	80.245	ENSMAUG00000020317	Sf3a1	100	77.089	Mesocricetus_auratus
ENSCVAG00000004560	sf3a1	98	84.375	ENSMICG00000010038	SF3A1	100	83.145	Microcebus_murinus
ENSCVAG00000004560	sf3a1	97	83.963	ENSMOCG00000008438	Sf3a1	100	82.893	Microtus_ochrogaster
ENSCVAG00000004560	sf3a1	100	87.898	ENSMMOG00000015588	sf3a1	99	88.662	Mola_mola
ENSCVAG00000004560	sf3a1	98	83.485	ENSMODG00000009270	SF3A1	100	82.872	Monodelphis_domestica
ENSCVAG00000004560	sf3a1	100	91.751	ENSMALG00000000148	sf3a1	100	91.878	Monopterus_albus
ENSCVAG00000004560	sf3a1	98	83.506	MGP_CAROLIEiJ_G0016029	Sf3a1	99	82.576	Mus_caroli
ENSCVAG00000004560	sf3a1	98	83.506	ENSMUSG00000002129	Sf3a1	99	82.576	Mus_musculus
ENSCVAG00000004560	sf3a1	98	83.247	MGP_PahariEiJ_G0016862	Sf3a1	99	82.576	Mus_pahari
ENSCVAG00000004560	sf3a1	98	83.506	MGP_SPRETEiJ_G0016870	Sf3a1	99	82.576	Mus_spretus
ENSCVAG00000004560	sf3a1	98	84.375	ENSMPUG00000013144	SF3A1	100	83.145	Mustela_putorius_furo
ENSCVAG00000004560	sf3a1	98	84.115	ENSMLUG00000002139	SF3A1	100	82.893	Myotis_lucifugus
ENSCVAG00000004560	sf3a1	99	83.269	ENSNGAG00000016977	Sf3a1	100	82.767	Nannospalax_galili
ENSCVAG00000004560	sf3a1	100	92.893	ENSNBRG00000016642	sf3a1	100	92.640	Neolamprologus_brichardi
ENSCVAG00000004560	sf3a1	98	84.375	ENSNLEG00000003686	SF3A1	100	83.145	Nomascus_leucogenys
ENSCVAG00000004560	sf3a1	94	75.134	ENSMEUG00000008741	SF3A1	100	75.296	Notamacropus_eugenii
ENSCVAG00000004560	sf3a1	98	84.695	ENSOPRG00000016636	SF3A1	100	83.396	Ochotona_princeps
ENSCVAG00000004560	sf3a1	98	84.005	ENSODEG00000002571	SF3A1	100	82.746	Octodon_degus
ENSCVAG00000004560	sf3a1	100	93.520	ENSONIG00000010848	sf3a1	100	93.520	Oreochromis_niloticus
ENSCVAG00000004560	sf3a1	98	84.245	ENSOCUG00000007633	SF3A1	100	83.145	Oryctolagus_cuniculus
ENSCVAG00000004560	sf3a1	96	91.645	ENSORLG00000013050	sf3a1	99	91.512	Oryzias_latipes
ENSCVAG00000004560	sf3a1	99	88.875	ENSORLG00020003236	sf3a1	95	91.379	Oryzias_latipes_hni
ENSCVAG00000004560	sf3a1	100	91.360	ENSORLG00015017411	sf3a1	100	91.233	Oryzias_latipes_hsok
ENSCVAG00000004560	sf3a1	100	92.249	ENSOMEG00000013362	sf3a1	100	91.995	Oryzias_melastigma
ENSCVAG00000004560	sf3a1	98	84.375	ENSOGAG00000012931	SF3A1	100	83.145	Otolemur_garnettii
ENSCVAG00000004560	sf3a1	98	83.073	ENSOARG00000006849	SF3A1	100	81.887	Ovis_aries
ENSCVAG00000004560	sf3a1	98	83.594	ENSPPAG00000041790	SF3A1	100	82.264	Pan_paniscus
ENSCVAG00000004560	sf3a1	98	83.984	ENSPPRG00000004391	SF3A1	100	82.767	Panthera_pardus
ENSCVAG00000004560	sf3a1	98	83.854	ENSPTIG00000000844	SF3A1	99	84.115	Panthera_tigris_altaica
ENSCVAG00000004560	sf3a1	98	84.375	ENSPTRG00000014240	SF3A1	100	83.145	Pan_troglodytes
ENSCVAG00000004560	sf3a1	98	84.375	ENSPANG00000020772	SF3A1	100	83.145	Papio_anubis
ENSCVAG00000004560	sf3a1	79	90.110	ENSPSIG00000012803	SF3A1	99	90.110	Pelodiscus_sinensis
ENSCVAG00000004560	sf3a1	97	89.253	ENSPMGG00000023096	sf3a1	100	90.170	Periophthalmus_magnuspinnatus
ENSCVAG00000004560	sf3a1	97	84.474	ENSPEMG00000009494	Sf3a1	100	82.893	Peromyscus_maniculatus_bairdii
ENSCVAG00000004560	sf3a1	71	74.250	ENSPMAG00000007139	-	100	71.854	Petromyzon_marinus
ENSCVAG00000004560	sf3a1	97	84.094	ENSPCIG00000022692	SF3A1	100	82.997	Phascolarctos_cinereus
ENSCVAG00000004560	sf3a1	100	85.242	ENSPFOG00000016768	sf3a1	100	85.279	Poecilia_formosa
ENSCVAG00000004560	sf3a1	100	95.802	ENSPLAG00000017268	sf3a1	100	95.802	Poecilia_latipinna
ENSCVAG00000004560	sf3a1	96	95.606	ENSPMEG00000019811	sf3a1	100	95.606	Poecilia_mexicana
ENSCVAG00000004560	sf3a1	100	95.547	ENSPREG00000010347	sf3a1	100	95.547	Poecilia_reticulata
ENSCVAG00000004560	sf3a1	98	84.375	ENSPPYG00000011707	SF3A1	100	83.145	Pongo_abelii
ENSCVAG00000004560	sf3a1	58	83.058	ENSPCAG00000003266	SF3A1	57	83.058	Procavia_capensis
ENSCVAG00000004560	sf3a1	98	84.115	ENSPCOG00000026630	SF3A1	100	82.893	Propithecus_coquereli
ENSCVAG00000004560	sf3a1	95	83.936	ENSPVAG00000017719	SF3A1	94	84.203	Pteropus_vampyrus
ENSCVAG00000004560	sf3a1	100	93.393	ENSPNYG00000018706	sf3a1	100	93.139	Pundamilia_nyererei
ENSCVAG00000004560	sf3a1	99	86.641	ENSPNAG00000003721	sf3a1	99	86.514	Pygocentrus_nattereri
ENSCVAG00000004560	sf3a1	99	82.990	ENSRNOG00000005218	Sf3a1	99	82.465	Rattus_norvegicus
ENSCVAG00000004560	sf3a1	98	84.245	ENSRBIG00000032167	SF3A1	100	83.019	Rhinopithecus_bieti
ENSCVAG00000004560	sf3a1	98	84.245	ENSRROG00000044908	SF3A1	100	83.019	Rhinopithecus_roxellana
ENSCVAG00000004560	sf3a1	93	84.490	ENSSBOG00000021960	SF3A1	98	84.431	Saimiri_boliviensis_boliviensis
ENSCVAG00000004560	sf3a1	98	81.014	ENSSHAG00000003666	SF3A1	97	81.925	Sarcophilus_harrisii
ENSCVAG00000004560	sf3a1	100	88.243	ENSSFOG00015004579	sf3a1	100	89.381	Scleropages_formosus
ENSCVAG00000004560	sf3a1	100	89.045	ENSSMAG00000004275	sf3a1	100	88.917	Scophthalmus_maximus
ENSCVAG00000004560	sf3a1	100	92.757	ENSSDUG00000022219	sf3a1	100	92.503	Seriola_dumerili
ENSCVAG00000004560	sf3a1	100	92.757	ENSSLDG00000012642	sf3a1	100	92.503	Seriola_lalandi_dorsalis
ENSCVAG00000004560	sf3a1	98	80.859	ENSSARG00000005960	SF3A1	99	81.120	Sorex_araneus
ENSCVAG00000004560	sf3a1	96	81.795	ENSSPUG00000018863	SF3A1	100	82.565	Sphenodon_punctatus
ENSCVAG00000004560	sf3a1	100	92.884	ENSSPAG00000011856	sf3a1	100	92.630	Stegastes_partitus
ENSCVAG00000004560	sf3a1	98	84.245	ENSSSCG00000010002	SF3A1	100	83.019	Sus_scrofa
ENSCVAG00000004560	sf3a1	96	82.872	ENSTGUG00000010547	SF3A1	100	83.721	Taeniopygia_guttata
ENSCVAG00000004560	sf3a1	100	88.153	ENSTRUG00000006118	sf3a1	100	88.153	Takifugu_rubripes
ENSCVAG00000004560	sf3a1	62	85.036	ENSTNIG00000005713	sf3a1	89	90.826	Tetraodon_nigroviridis
ENSCVAG00000004560	sf3a1	98	78.182	ENSTBEG00000012771	SF3A1	100	77.233	Tupaia_belangeri
ENSCVAG00000004560	sf3a1	98	83.875	ENSTTRG00000001535	SF3A1	100	82.915	Tursiops_truncatus
ENSCVAG00000004560	sf3a1	99	81.749	ENSUAMG00000006750	SF3A1	99	82.003	Ursus_americanus
ENSCVAG00000004560	sf3a1	99	83.526	ENSUMAG00000016665	SF3A1	99	83.784	Ursus_maritimus
ENSCVAG00000004560	sf3a1	98	84.245	ENSVVUG00000003075	SF3A1	100	83.019	Vulpes_vulpes
ENSCVAG00000004560	sf3a1	100	77.096	ENSXETG00000016144	sf3a1	96	83.267	Xenopus_tropicalis
ENSCVAG00000004560	sf3a1	100	95.026	ENSXCOG00000015653	sf3a1	100	95.026	Xiphophorus_couchianus
ENSCVAG00000004560	sf3a1	100	95.281	ENSXMAG00000002753	sf3a1	100	95.281	Xiphophorus_maculatus