EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000004853 (Gene tree)
Gene ID: 107092322
Gene Symbol: cirbpa
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 3067 bases
Position: chrKL652874.1:664842-667908
Accession: 107092322
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000003647	RRM_1	PF00076.22	1.3e-25	1	1
ENSCVAP00000022292	RRM_1	PF00076.22	1.3e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000009687	-	942	XM_015386719	ENSCVAP00000022292	185 (aa)	XP_015242205	UPI000742510E
ENSCVAT00000009681	-	1008	XM_015386720	ENSCVAP00000003647	182 (aa)	XP_015242206	UPI00074252DE

Gene Model

Click here to download ENSCVAG00000004853's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000004853's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000004853	cirbpa	58	45.946	ENSCVAG00000017075	msi2a	54	45.946
ENSCVAG00000004853	cirbpa	51	38.947	ENSCVAG00000017430	zgc:110796	68	38.947
ENSCVAG00000004853	cirbpa	50	34.409	ENSCVAG00000009865	-	58	34.783
ENSCVAG00000004853	cirbpa	87	40.278	ENSCVAG00000014060	elavl3	63	40.278

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000004853	cirbpa	73	84.211	ENSAPOG00000004458	cirbpa	100	72.308	Acanthochromis_polyacanthus
ENSCVAG00000004853	cirbpa	99	79.781	ENSACIG00000016116	cirbpa	100	75.401	Amphilophus_citrinellus
ENSCVAG00000004853	cirbpa	100	69.892	ENSAOCG00000016212	cirbpa	100	78.191	Amphiprion_ocellaris
ENSCVAG00000004853	cirbpa	100	73.913	ENSAPEG00000011989	cirbpa	100	79.459	Amphiprion_percula
ENSCVAG00000004853	cirbpa	100	79.121	ENSATEG00000014985	cirbpa	100	77.297	Anabas_testudineus
ENSCVAG00000004853	cirbpa	100	81.522	ENSACLG00000002094	-	100	81.522	Astatotilapia_calliptera
ENSCVAG00000004853	cirbpa	100	53.431	ENSAMXG00000015612	cirbpb	84	58.173	Astyanax_mexicanus
ENSCVAG00000004853	cirbpa	100	66.667	ENSCSEG00000014344	cirbpa	100	68.205	Cynoglossus_semilaevis
ENSCVAG00000004853	cirbpa	100	59.259	ENSDARG00000103672	cirbpa	100	58.549	Danio_rerio
ENSCVAG00000004853	cirbpa	100	82.514	ENSFHEG00000002580	cirbpa	100	82.703	Fundulus_heteroclitus
ENSCVAG00000004853	cirbpa	99	53.368	ENSGMOG00000007179	cirbpb	98	54.315	Gadus_morhua
ENSCVAG00000004853	cirbpa	100	86.022	ENSGAFG00000008654	cirbpa	100	86.022	Gambusia_affinis
ENSCVAG00000004853	cirbpa	100	59.459	ENSGACG00000014978	-	100	59.686	Gasterosteus_aculeatus
ENSCVAG00000004853	cirbpa	100	64.211	ENSGACG00000015206	cirbpa	100	70.526	Gasterosteus_aculeatus
ENSCVAG00000004853	cirbpa	100	81.818	ENSHBUG00000022060	cirbpa	100	81.818	Haplochromis_burtoni
ENSCVAG00000004853	cirbpa	51	84.783	ENSHCOG00000001170	cirbpa	79	89.474	Hippocampus_comes
ENSCVAG00000004853	cirbpa	100	76.374	ENSKMAG00000005905	cirbpa	100	73.626	Kryptolebias_marmoratus
ENSCVAG00000004853	cirbpa	64	70.940	ENSLBEG00000027731	-	76	78.723	Labrus_bergylta
ENSCVAG00000004853	cirbpa	100	63.021	ENSLBEG00000000292	cirbpa	100	62.500	Labrus_bergylta
ENSCVAG00000004853	cirbpa	100	79.459	ENSMAMG00000010168	cirbpa	100	77.838	Mastacembelus_armatus
ENSCVAG00000004853	cirbpa	100	81.818	ENSMZEG00005025577	-	100	81.818	Maylandia_zebra
ENSCVAG00000004853	cirbpa	100	85.165	ENSMALG00000020092	cirbpa	100	83.784	Monopterus_albus
ENSCVAG00000004853	cirbpa	100	81.818	ENSNBRG00000019658	cirbpa	100	81.818	Neolamprologus_brichardi
ENSCVAG00000004853	cirbpa	99	79.781	ENSONIG00000010169	cirbpa	100	75.401	Oreochromis_niloticus
ENSCVAG00000004853	cirbpa	100	83.243	ENSORLG00000015433	cirbpa	100	79.459	Oryzias_latipes
ENSCVAG00000004853	cirbpa	100	83.243	ENSORLG00020016909	cirbpa	100	79.459	Oryzias_latipes_hni
ENSCVAG00000004853	cirbpa	100	83.243	ENSORLG00015016636	cirbpa	100	79.459	Oryzias_latipes_hsok
ENSCVAG00000004853	cirbpa	100	84.615	ENSOMEG00000021469	cirbpa	73	80.541	Oryzias_melastigma
ENSCVAG00000004853	cirbpa	99	76.630	ENSPMGG00000017342	cirbpa	95	74.468	Periophthalmus_magnuspinnatus
ENSCVAG00000004853	cirbpa	100	87.701	ENSPFOG00000015653	cirbpa	100	87.701	Poecilia_formosa
ENSCVAG00000004853	cirbpa	100	87.978	ENSPLAG00000011125	cirbpa	100	88.108	Poecilia_latipinna
ENSCVAG00000004853	cirbpa	100	88.172	ENSPMEG00000013878	cirbpa	100	88.172	Poecilia_mexicana
ENSCVAG00000004853	cirbpa	99	87.363	ENSPREG00000018042	cirbpa	98	84.865	Poecilia_reticulata
ENSCVAG00000004853	cirbpa	100	81.818	ENSPNYG00000007198	-	100	81.818	Pundamilia_nyererei
ENSCVAG00000004853	cirbpa	100	56.585	ENSPNAG00000019997	cirbpb	100	57.767	Pygocentrus_nattereri
ENSCVAG00000004853	cirbpa	100	60.106	ENSSFOG00015005346	cirbpb	100	68.421	Scleropages_formosus
ENSCVAG00000004853	cirbpa	100	69.697	ENSSMAG00000002412	cirbpa	100	70.918	Scophthalmus_maximus
ENSCVAG00000004853	cirbpa	100	64.865	ENSSDUG00000016099	cirbpa	100	64.324	Seriola_dumerili
ENSCVAG00000004853	cirbpa	100	70.053	ENSSPAG00000023037	cirbpa	99	67.204	Stegastes_partitus
ENSCVAG00000004853	cirbpa	100	69.189	ENSTRUG00000010187	cirbpa	100	68.108	Takifugu_rubripes
ENSCVAG00000004853	cirbpa	100	71.351	ENSTNIG00000000450	cirbpa	100	71.892	Tetraodon_nigroviridis
ENSCVAG00000004853	cirbpa	99	86.264	ENSXCOG00000008262	cirbpa	92	95.890	Xiphophorus_couchianus
ENSCVAG00000004853	cirbpa	100	86.559	ENSXMAG00000019336	cirbpa	100	84.946	Xiphophorus_maculatus