EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000005030 (Gene tree)
Gene ID: 107093811
Gene Symbol: upf3b
Alias: zgc:174674|zgc:66390
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 6632 bases
Position: chrKL652519.1:807498-814129
Accession: 107093811
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000003781	Smg4_UPF3	PF03467.15	1.8e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000009460	-	3436	XM_015389098	ENSCVAP00000003781	455 (aa)	XP_015244584	UPI00074266AF

Gene Model

Click here to download ENSCVAG00000005030's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000005030's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000005030	upf3b	99	51.163	ENSG00000125351	UPF3B	96	66.029	Homo_sapiens
ENSCVAG00000005030	upf3b	100	81.004	ENSAPOG00000012775	upf3b	100	81.223	Acanthochromis_polyacanthus
ENSCVAG00000005030	upf3b	99	51.753	ENSAMEG00000000163	UPF3B	96	52.643	Ailuropoda_melanoleuca
ENSCVAG00000005030	upf3b	100	72.629	ENSACIG00000013582	upf3b	100	77.371	Amphilophus_citrinellus
ENSCVAG00000005030	upf3b	100	79.694	ENSAOCG00000000706	upf3b	100	80.349	Amphiprion_ocellaris
ENSCVAG00000005030	upf3b	100	81.004	ENSAPEG00000005545	upf3b	100	81.223	Amphiprion_percula
ENSCVAG00000005030	upf3b	100	78.448	ENSATEG00000018742	upf3b	100	79.310	Anabas_testudineus
ENSCVAG00000005030	upf3b	97	58.009	ENSACAG00000003625	UPF3B	98	56.087	Anolis_carolinensis
ENSCVAG00000005030	upf3b	99	50.633	ENSANAG00000025598	-	96	46.862	Aotus_nancymaae
ENSCVAG00000005030	upf3b	99	52.220	ENSANAG00000021894	-	97	64.593	Aotus_nancymaae
ENSCVAG00000005030	upf3b	100	79.565	ENSACLG00000001649	upf3b	100	80.000	Astatotilapia_calliptera
ENSCVAG00000005030	upf3b	89	45.232	ENSAMXG00000002608	upf3a	83	43.921	Astyanax_mexicanus
ENSCVAG00000005030	upf3b	56	79.231	ENSAMXG00000000199	upf3b	84	82.353	Astyanax_mexicanus
ENSCVAG00000005030	upf3b	56	65.568	ENSBTAG00000035615	UPF3B	68	66.029	Bos_taurus
ENSCVAG00000005030	upf3b	99	52.008	ENSCJAG00000004975	UPF3B	97	64.115	Callithrix_jacchus
ENSCVAG00000005030	upf3b	99	52.954	ENSCAFG00000018426	UPF3B	98	52.654	Canis_familiaris
ENSCVAG00000005030	upf3b	99	50.844	ENSCAFG00020004074	UPF3B	96	44.586	Canis_lupus_dingo
ENSCVAG00000005030	upf3b	99	50.501	ENSCHIG00000018011	-	88	54.943	Capra_hircus
ENSCVAG00000005030	upf3b	99	50.701	ENSCHIG00000000247	-	96	51.951	Capra_hircus
ENSCVAG00000005030	upf3b	99	53.700	ENSTSYG00000014690	UPF3B	96	60.000	Carlito_syrichta
ENSCVAG00000005030	upf3b	93	36.689	ENSCCAG00000029813	-	50	60.131	Cebus_capucinus
ENSCVAG00000005030	upf3b	64	62.013	ENSCATG00000017506	UPF3B	97	64.593	Cercocebus_atys
ENSCVAG00000005030	upf3b	64	62.662	ENSCLAG00000003260	UPF3B	95	55.773	Chinchilla_lanigera
ENSCVAG00000005030	upf3b	99	49.794	ENSCSAG00000018348	UPF3B	98	53.388	Chlorocebus_sabaeus
ENSCVAG00000005030	upf3b	95	57.823	ENSCPBG00000020685	UPF3B	93	57.143	Chrysemys_picta_bellii
ENSCVAG00000005030	upf3b	64	56.169	ENSCGRG00001013643	-	95	53.521	Cricetulus_griseus_chok1gshd
ENSCVAG00000005030	upf3b	95	50.110	ENSCGRG00001006858	-	83	55.500	Cricetulus_griseus_chok1gshd
ENSCVAG00000005030	upf3b	86	53.250	ENSCGRG00000007627	Upf3b	93	55.416	Cricetulus_griseus_crigri
ENSCVAG00000005030	upf3b	94	78.802	ENSCSEG00000002046	upf3b	92	77.703	Cynoglossus_semilaevis
ENSCVAG00000005030	upf3b	89	48.578	ENSDARG00000069297	upf3a	84	46.535	Danio_rerio
ENSCVAG00000005030	upf3b	94	70.938	ENSDARG00000000489	upf3b	96	69.196	Danio_rerio
ENSCVAG00000005030	upf3b	96	51.351	ENSDNOG00000008665	UPF3B	93	53.348	Dasypus_novemcinctus
ENSCVAG00000005030	upf3b	99	53.602	ENSDORG00000006077	Upf3b	96	52.350	Dipodomys_ordii
ENSCVAG00000005030	upf3b	99	52.321	ENSEASG00005012919	UPF3B	96	47.771	Equus_asinus_asinus
ENSCVAG00000005030	upf3b	99	52.321	ENSECAG00000016947	UPF3B	96	47.771	Equus_caballus
ENSCVAG00000005030	upf3b	99	64.536	ENSELUG00000020389	upf3b	100	67.078	Esox_lucius
ENSCVAG00000005030	upf3b	93	49.428	ENSELUG00000011050	upf3a	87	44.811	Esox_lucius
ENSCVAG00000005030	upf3b	64	62.662	ENSFCAG00000004388	UPF3B	96	52.632	Felis_catus
ENSCVAG00000005030	upf3b	96	48.340	ENSFALG00000001569	UPF3B	96	47.303	Ficedula_albicollis
ENSCVAG00000005030	upf3b	96	56.522	ENSFDAG00000018869	UPF3B	95	55.338	Fukomys_damarensis
ENSCVAG00000005030	upf3b	100	86.522	ENSFHEG00000017895	upf3b	100	86.739	Fundulus_heteroclitus
ENSCVAG00000005030	upf3b	100	65.190	ENSGMOG00000001621	upf3b	100	65.678	Gadus_morhua
ENSCVAG00000005030	upf3b	96	56.427	ENSGALG00000008618	UPF3B	95	56.427	Gallus_gallus
ENSCVAG00000005030	upf3b	100	88.816	ENSGAFG00000000829	upf3b	100	88.816	Gambusia_affinis
ENSCVAG00000005030	upf3b	100	71.888	ENSGACG00000017435	upf3b	94	85.603	Gasterosteus_aculeatus
ENSCVAG00000005030	upf3b	95	61.538	ENSGAGG00000001219	UPF3B	94	58.239	Gopherus_agassizii
ENSCVAG00000005030	upf3b	99	51.163	ENSGGOG00000023995	UPF3B	97	54.852	Gorilla_gorilla
ENSCVAG00000005030	upf3b	100	79.783	ENSHBUG00000017393	upf3b	100	80.217	Haplochromis_burtoni
ENSCVAG00000005030	upf3b	64	57.792	ENSHGLG00000011189	-	73	56.678	Heterocephalus_glaber_female
ENSCVAG00000005030	upf3b	96	55.459	ENSHGLG00000019582	-	95	54.684	Heterocephalus_glaber_female
ENSCVAG00000005030	upf3b	64	57.792	ENSHGLG00100001889	-	72	56.908	Heterocephalus_glaber_male
ENSCVAG00000005030	upf3b	96	52.954	ENSHGLG00100002042	-	95	52.505	Heterocephalus_glaber_male
ENSCVAG00000005030	upf3b	100	69.427	ENSHCOG00000017004	upf3b	100	70.000	Hippocampus_comes
ENSCVAG00000005030	upf3b	99	71.490	ENSIPUG00000019249	upf3b	100	69.677	Ictalurus_punctatus
ENSCVAG00000005030	upf3b	99	51.983	ENSSTOG00000001101	UPF3B	96	53.277	Ictidomys_tridecemlineatus
ENSCVAG00000005030	upf3b	64	61.688	ENSJJAG00000000053	Upf3b	97	51.702	Jaculus_jaculus
ENSCVAG00000005030	upf3b	89	42.615	ENSKMAG00000004381	upf3a	84	41.892	Kryptolebias_marmoratus
ENSCVAG00000005030	upf3b	100	82.751	ENSKMAG00000020300	upf3b	100	82.751	Kryptolebias_marmoratus
ENSCVAG00000005030	upf3b	61	85.870	ENSLBEG00000028689	upf3b	59	85.556	Labrus_bergylta
ENSCVAG00000005030	upf3b	100	57.708	ENSLACG00000008691	UPF3B	100	57.474	Latimeria_chalumnae
ENSCVAG00000005030	upf3b	93	51.389	ENSLOCG00000002665	upf3a	88	44.548	Lepisosteus_oculatus
ENSCVAG00000005030	upf3b	99	62.719	ENSLOCG00000015238	upf3b	100	62.882	Lepisosteus_oculatus
ENSCVAG00000005030	upf3b	96	52.854	ENSLAFG00000001267	UPF3B	96	54.113	Loxodonta_africana
ENSCVAG00000005030	upf3b	99	50.951	ENSMFAG00000045414	UPF3B	97	64.593	Macaca_fascicularis
ENSCVAG00000005030	upf3b	99	50.951	ENSMMUG00000020222	UPF3B	97	64.593	Macaca_mulatta
ENSCVAG00000005030	upf3b	99	50.951	ENSMNEG00000039794	UPF3B	97	64.593	Macaca_nemestrina
ENSCVAG00000005030	upf3b	64	62.013	ENSMLEG00000010999	UPF3B	97	64.593	Mandrillus_leucophaeus
ENSCVAG00000005030	upf3b	91	43.607	ENSMAMG00000018364	upf3a	85	44.056	Mastacembelus_armatus
ENSCVAG00000005030	upf3b	100	79.783	ENSMZEG00005007871	upf3b	100	80.217	Maylandia_zebra
ENSCVAG00000005030	upf3b	87	42.822	ENSMGAG00000014837	UPF3A	98	39.078	Meleagris_gallopavo
ENSCVAG00000005030	upf3b	80	57.609	ENSMGAG00000007728	UPF3B	94	57.609	Meleagris_gallopavo
ENSCVAG00000005030	upf3b	99	50.104	ENSMAUG00000008705	Upf3b	85	52.009	Mesocricetus_auratus
ENSCVAG00000005030	upf3b	56	66.300	ENSMICG00000001743	UPF3B	65	66.029	Microcebus_murinus
ENSCVAG00000005030	upf3b	99	51.660	ENSMOCG00000017893	Upf3b	96	50.936	Microtus_ochrogaster
ENSCVAG00000005030	upf3b	100	75.217	ENSMMOG00000004183	upf3b	100	75.217	Mola_mola
ENSCVAG00000005030	upf3b	91	60.143	ENSMODG00000010232	UPF3B	97	59.472	Monodelphis_domestica
ENSCVAG00000005030	upf3b	100	79.185	ENSMALG00000008042	upf3b	100	78.970	Monopterus_albus
ENSCVAG00000005030	upf3b	99	50.844	MGP_CAROLIEiJ_G0032999	Upf3b	93	50.206	Mus_caroli
ENSCVAG00000005030	upf3b	58	63.251	ENSMUSG00000036572	Upf3b	92	50.206	Mus_musculus
ENSCVAG00000005030	upf3b	99	51.899	MGP_PahariEiJ_G0031543	Upf3b	93	50.617	Mus_pahari
ENSCVAG00000005030	upf3b	58	63.251	MGP_SPRETEiJ_G0034152	Upf3b	93	50.206	Mus_spretus
ENSCVAG00000005030	upf3b	99	49.895	ENSMPUG00000001531	UPF3B	98	52.866	Mustela_putorius_furo
ENSCVAG00000005030	upf3b	99	52.643	ENSMLUG00000010821	UPF3B	85	56.190	Myotis_lucifugus
ENSCVAG00000005030	upf3b	100	51.446	ENSNGAG00000008231	Upf3b	93	53.020	Nannospalax_galili
ENSCVAG00000005030	upf3b	95	52.874	ENSNLEG00000014897	UPF3B	87	57.075	Nomascus_leucogenys
ENSCVAG00000005030	upf3b	96	52.203	ENSODEG00000002186	-	95	51.096	Octodon_degus
ENSCVAG00000005030	upf3b	100	80.215	ENSONIG00000002536	upf3b	100	80.430	Oreochromis_niloticus
ENSCVAG00000005030	upf3b	91	54.632	ENSOANG00000002594	-	97	54.048	Ornithorhynchus_anatinus
ENSCVAG00000005030	upf3b	100	48.988	ENSOCUG00000010213	UPF3B	97	51.639	Oryctolagus_cuniculus
ENSCVAG00000005030	upf3b	93	49.661	ENSORLG00000010911	upf3a	89	43.736	Oryzias_latipes
ENSCVAG00000005030	upf3b	100	76.638	ENSORLG00000001026	upf3b	100	76.638	Oryzias_latipes
ENSCVAG00000005030	upf3b	93	47.059	ENSORLG00020014317	upf3a	89	48.182	Oryzias_latipes_hni
ENSCVAG00000005030	upf3b	100	76.201	ENSORLG00020003758	upf3b	100	76.357	Oryzias_latipes_hni
ENSCVAG00000005030	upf3b	100	75.983	ENSORLG00015012954	upf3b	100	75.983	Oryzias_latipes_hsok
ENSCVAG00000005030	upf3b	93	48.649	ENSOMEG00000014425	upf3a	82	45.074	Oryzias_melastigma
ENSCVAG00000005030	upf3b	100	77.293	ENSOMEG00000014736	upf3b	100	77.293	Oryzias_melastigma
ENSCVAG00000005030	upf3b	64	62.662	ENSOGAG00000004643	-	96	53.291	Otolemur_garnettii
ENSCVAG00000005030	upf3b	96	51.613	ENSOGAG00000033003	-	87	51.707	Otolemur_garnettii
ENSCVAG00000005030	upf3b	99	50.398	ENSOARG00000016051	-	96	51.633	Ovis_aries
ENSCVAG00000005030	upf3b	99	51.163	ENSPPAG00000040390	UPF3B	97	54.852	Pan_paniscus
ENSCVAG00000005030	upf3b	99	55.297	ENSPPRG00000023536	UPF3B	96	53.928	Panthera_pardus
ENSCVAG00000005030	upf3b	99	51.235	ENSPTIG00000015264	UPF3B	96	53.196	Panthera_tigris_altaica
ENSCVAG00000005030	upf3b	99	51.163	ENSPTRG00000022228	UPF3B	97	54.852	Pan_troglodytes
ENSCVAG00000005030	upf3b	64	62.013	ENSPANG00000000900	UPF3B	97	64.593	Papio_anubis
ENSCVAG00000005030	upf3b	99	67.756	ENSPKIG00000019226	upf3b	92	86.620	Paramormyrops_kingsleyae
ENSCVAG00000005030	upf3b	57	63.258	ENSPSIG00000005833	UPF3B	93	63.396	Pelodiscus_sinensis
ENSCVAG00000005030	upf3b	58	85.171	ENSPMGG00000016067	upf3b	95	85.171	Periophthalmus_magnuspinnatus
ENSCVAG00000005030	upf3b	99	53.053	ENSPEMG00000012352	Upf3b	96	52.532	Peromyscus_maniculatus_bairdii
ENSCVAG00000005030	upf3b	74	53.488	ENSPCIG00000019590	-	62	66.434	Phascolarctos_cinereus
ENSCVAG00000005030	upf3b	93	56.876	ENSPCIG00000028914	UPF3B	87	52.758	Phascolarctos_cinereus
ENSCVAG00000005030	upf3b	100	90.132	ENSPLAG00000019922	upf3b	100	90.132	Poecilia_latipinna
ENSCVAG00000005030	upf3b	100	90.132	ENSPLAG00000005105	upf3b	100	90.132	Poecilia_latipinna
ENSCVAG00000005030	upf3b	89	47.942	ENSPLAG00000011960	upf3a	85	47.936	Poecilia_latipinna
ENSCVAG00000005030	upf3b	58	71.053	ENSPMEG00000000836	upf3a	85	41.463	Poecilia_mexicana
ENSCVAG00000005030	upf3b	100	89.912	ENSPMEG00000023532	upf3b	100	89.912	Poecilia_mexicana
ENSCVAG00000005030	upf3b	57	64.964	ENSPPYG00000020675	-	63	66.029	Pongo_abelii
ENSCVAG00000005030	upf3b	96	51.695	ENSPCAG00000009464	UPF3B	85	54.048	Procavia_capensis
ENSCVAG00000005030	upf3b	99	52.854	ENSPCOG00000021960	UPF3B	93	53.348	Propithecus_coquereli
ENSCVAG00000005030	upf3b	100	80.131	ENSPNYG00000009846	upf3b	100	80.131	Pundamilia_nyererei
ENSCVAG00000005030	upf3b	99	71.828	ENSPNAG00000021528	upf3b	91	85.567	Pygocentrus_nattereri
ENSCVAG00000005030	upf3b	89	44.743	ENSPNAG00000019532	upf3a	83	43.424	Pygocentrus_nattereri
ENSCVAG00000005030	upf3b	64	60.841	ENSRNOG00000039994	Upf3b	95	51.860	Rattus_norvegicus
ENSCVAG00000005030	upf3b	99	51.163	ENSRROG00000041031	UPF3B	97	64.593	Rhinopithecus_roxellana
ENSCVAG00000005030	upf3b	99	51.797	ENSSBOG00000019740	UPF3B	99	64.593	Saimiri_boliviensis_boliviensis
ENSCVAG00000005030	upf3b	98	55.626	ENSSHAG00000008634	UPF3B	98	55.106	Sarcophilus_harrisii
ENSCVAG00000005030	upf3b	99	68.928	ENSSFOG00015005614	upf3b	100	65.427	Scleropages_formosus
ENSCVAG00000005030	upf3b	100	76.017	ENSSMAG00000012913	upf3b	100	87.938	Scophthalmus_maximus
ENSCVAG00000005030	upf3b	91	43.541	ENSSDUG00000009680	upf3a	54	78.409	Seriola_dumerili
ENSCVAG00000005030	upf3b	100	79.870	ENSSDUG00000005682	upf3b	100	81.169	Seriola_dumerili
ENSCVAG00000005030	upf3b	100	81.385	ENSSLDG00000003130	upf3b	100	81.169	Seriola_lalandi_dorsalis
ENSCVAG00000005030	upf3b	92	52.315	ENSSARG00000004147	UPF3B	96	52.995	Sorex_araneus
ENSCVAG00000005030	upf3b	97	55.115	ENSSPUG00000013082	UPF3B	98	54.088	Sphenodon_punctatus
ENSCVAG00000005030	upf3b	99	80.440	ENSSPAG00000009989	upf3b	99	80.440	Stegastes_partitus
ENSCVAG00000005030	upf3b	100	51.745	ENSSSCG00000012617	UPF3B	96	52.854	Sus_scrofa
ENSCVAG00000005030	upf3b	89	59.214	ENSTGUG00000003413	UPF3B	95	58.621	Taeniopygia_guttata
ENSCVAG00000005030	upf3b	100	73.856	ENSTRUG00000010645	upf3b	100	73.638	Takifugu_rubripes
ENSCVAG00000005030	upf3b	90	49.038	ENSTRUG00000012730	upf3a	83	49.510	Takifugu_rubripes
ENSCVAG00000005030	upf3b	88	43.424	ENSTNIG00000014973	upf3a	97	42.356	Tetraodon_nigroviridis
ENSCVAG00000005030	upf3b	99	65.801	ENSTNIG00000015763	upf3b	100	61.853	Tetraodon_nigroviridis
ENSCVAG00000005030	upf3b	87	55.839	ENSTBEG00000003229	UPF3B	67	53.589	Tupaia_belangeri
ENSCVAG00000005030	upf3b	99	53.684	ENSUAMG00000024565	UPF3B	92	56.140	Ursus_americanus
ENSCVAG00000005030	upf3b	92	52.235	ENSUMAG00000002150	UPF3B	86	43.750	Ursus_maritimus
ENSCVAG00000005030	upf3b	86	51.422	ENSVPAG00000009971	UPF3B	95	53.171	Vicugna_pacos
ENSCVAG00000005030	upf3b	96	51.634	ENSVVUG00000011594	UPF3B	97	64.593	Vulpes_vulpes
ENSCVAG00000005030	upf3b	87	44.526	ENSXETG00000002572	upf3a	89	40.528	Xenopus_tropicalis
ENSCVAG00000005030	upf3b	96	53.509	ENSXETG00000007440	upf3b	84	77.320	Xenopus_tropicalis
ENSCVAG00000005030	upf3b	100	79.869	ENSXCOG00000016586	upf3b	97	93.846	Xiphophorus_couchianus
ENSCVAG00000005030	upf3b	59	68.153	ENSXMAG00000013452	upf3a	84	43.287	Xiphophorus_maculatus
ENSCVAG00000005030	upf3b	100	88.596	ENSXMAG00000013680	upf3b	100	88.596	Xiphophorus_maculatus