EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000005039 (Gene tree)
Gene ID: 107090108
Gene Symbol: cmss1
Alias: zgc:101814
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 36008 bases
Position: chrKL652781.1:928858-964865
Accession: 107090108
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000003816	CMS1	PF14617.6	2.5e-33	1	1
ENSCVAP00000003816	DEAD	PF00270.29	2.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000009399	-	1240	XM_015383296	ENSCVAP00000003816	288 (aa)	XP_015238782	UPI000742795C

Gene Model

Click here to download ENSCVAG00000005039's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000005039's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000005039	cmss1	100	52.234	ENSG00000184220	CMSS1	98	61.250	Homo_sapiens
ENSCVAG00000005039	cmss1	70	85.714	ENSAPOG00000010604	cmss1	93	72.835	Acanthochromis_polyacanthus
ENSCVAG00000005039	cmss1	88	55.118	ENSAMEG00000004092	CMSS1	78	61.084	Ailuropoda_melanoleuca
ENSCVAG00000005039	cmss1	92	71.970	ENSACIG00000021854	cmss1	97	73.152	Amphilophus_citrinellus
ENSCVAG00000005039	cmss1	100	75.601	ENSAOCG00000013361	cmss1	100	78.351	Amphiprion_ocellaris
ENSCVAG00000005039	cmss1	100	76.289	ENSAPEG00000005829	cmss1	100	78.007	Amphiprion_percula
ENSCVAG00000005039	cmss1	100	72.414	ENSATEG00000008209	cmss1	100	72.759	Anabas_testudineus
ENSCVAG00000005039	cmss1	70	62.376	ENSAPLG00000010542	CMSS1	97	59.910	Anas_platyrhynchos
ENSCVAG00000005039	cmss1	85	55.426	ENSACAG00000011065	CMSS1	74	65.347	Anolis_carolinensis
ENSCVAG00000005039	cmss1	100	52.921	ENSANAG00000023565	CMSS1	100	52.921	Aotus_nancymaae
ENSCVAG00000005039	cmss1	100	73.973	ENSACLG00000027294	cmss1	100	74.315	Astatotilapia_calliptera
ENSCVAG00000005039	cmss1	100	55.892	ENSAMXG00000002046	cmss1	100	57.143	Astyanax_mexicanus
ENSCVAG00000005039	cmss1	100	53.125	ENSBTAG00000013663	CMSS1	100	51.203	Bos_taurus
ENSCVAG00000005039	cmss1	100	52.921	ENSCJAG00000000610	CMSS1	100	52.414	Callithrix_jacchus
ENSCVAG00000005039	cmss1	94	53.285	ENSCAFG00000009230	CMSS1	73	61.881	Canis_familiaris
ENSCVAG00000005039	cmss1	70	60.396	ENSCAFG00020024156	-	63	60.396	Canis_lupus_dingo
ENSCVAG00000005039	cmss1	86	57.200	ENSCAFG00020009464	-	74	61.881	Canis_lupus_dingo
ENSCVAG00000005039	cmss1	94	53.480	ENSCHIG00000013003	CMSS1	73	61.881	Capra_hircus
ENSCVAG00000005039	cmss1	83	57.917	ENSTSYG00000009266	CMSS1	89	58.298	Carlito_syrichta
ENSCVAG00000005039	cmss1	66	54.497	ENSCAPG00000013584	CMSS1	88	54.497	Cavia_aperea
ENSCVAG00000005039	cmss1	100	54.325	ENSCPOG00000014680	CMSS1	100	53.633	Cavia_porcellus
ENSCVAG00000005039	cmss1	100	53.952	ENSCCAG00000034685	CMSS1	100	53.952	Cebus_capucinus
ENSCVAG00000005039	cmss1	100	52.577	ENSCATG00000031980	CMSS1	100	51.211	Cercocebus_atys
ENSCVAG00000005039	cmss1	69	61.000	ENSCLAG00000011241	CMSS1	87	60.891	Chinchilla_lanigera
ENSCVAG00000005039	cmss1	70	61.386	ENSCSAG00000006024	CMSS1	82	61.386	Chlorocebus_sabaeus
ENSCVAG00000005039	cmss1	100	39.519	ENSCHOG00000012098	CMSS1	100	39.310	Choloepus_hoffmanni
ENSCVAG00000005039	cmss1	77	41.704	ENSCING00000014848	-	99	44.920	Ciona_intestinalis
ENSCVAG00000005039	cmss1	100	52.577	ENSCANG00000031337	CMSS1	100	51.211	Colobus_angolensis_palliatus
ENSCVAG00000005039	cmss1	100	49.660	ENSCGRG00001014305	Cmss1	100	49.320	Cricetulus_griseus_chok1gshd
ENSCVAG00000005039	cmss1	70	59.901	ENSCGRG00000006722	Cmss1	79	59.901	Cricetulus_griseus_crigri
ENSCVAG00000005039	cmss1	100	68.243	ENSCSEG00000004958	cmss1	100	68.243	Cynoglossus_semilaevis
ENSCVAG00000005039	cmss1	100	58.446	ENSDARG00000112579	cmss1	100	57.679	Danio_rerio
ENSCVAG00000005039	cmss1	79	58.369	ENSDNOG00000040418	CMSS1	73	60.891	Dasypus_novemcinctus
ENSCVAG00000005039	cmss1	100	54.110	ENSDORG00000010461	Cmss1	100	52.249	Dipodomys_ordii
ENSCVAG00000005039	cmss1	69	60.500	ENSEASG00005010966	CMSS1	92	60.396	Equus_asinus_asinus
ENSCVAG00000005039	cmss1	83	56.017	ENSECAG00000015662	CMSS1	89	59.901	Equus_caballus
ENSCVAG00000005039	cmss1	69	43.500	ENSEEUG00000007624	-	100	36.111	Erinaceus_europaeus
ENSCVAG00000005039	cmss1	100	58.416	ENSELUG00000019459	cmss1	100	56.954	Esox_lucius
ENSCVAG00000005039	cmss1	100	54.483	ENSFCAG00000044577	CMSS1	100	53.608	Felis_catus
ENSCVAG00000005039	cmss1	70	61.881	ENSFALG00000005816	CMSS1	85	61.881	Ficedula_albicollis
ENSCVAG00000005039	cmss1	70	61.386	ENSFDAG00000012577	CMSS1	89	61.386	Fukomys_damarensis
ENSCVAG00000005039	cmss1	81	86.638	ENSFHEG00000012008	cmss1	95	86.638	Fundulus_heteroclitus
ENSCVAG00000005039	cmss1	99	62.457	ENSGMOG00000016729	cmss1	100	62.976	Gadus_morhua
ENSCVAG00000005039	cmss1	70	63.366	ENSGALG00000015267	CMSS1	77	63.366	Gallus_gallus
ENSCVAG00000005039	cmss1	93	78.832	ENSGAFG00000021217	cmss1	95	80.309	Gambusia_affinis
ENSCVAG00000005039	cmss1	99	65.972	ENSGACG00000002798	cmss1	100	64.931	Gasterosteus_aculeatus
ENSCVAG00000005039	cmss1	94	53.763	ENSGAGG00000019861	CMSS1	79	64.851	Gopherus_agassizii
ENSCVAG00000005039	cmss1	82	57.203	ENSGGOG00000014125	CMSS1	77	60.891	Gorilla_gorilla
ENSCVAG00000005039	cmss1	100	72.603	ENSHBUG00000008431	cmss1	100	73.630	Haplochromis_burtoni
ENSCVAG00000005039	cmss1	69	60.500	ENSHGLG00000019481	CMSS1	82	60.396	Heterocephalus_glaber_female
ENSCVAG00000005039	cmss1	69	60.500	ENSHGLG00100010314	CMSS1	81	60.396	Heterocephalus_glaber_male
ENSCVAG00000005039	cmss1	100	66.330	ENSHCOG00000003222	cmss1	100	65.657	Hippocampus_comes
ENSCVAG00000005039	cmss1	100	58.763	ENSIPUG00000011591	cmss1	100	58.108	Ictalurus_punctatus
ENSCVAG00000005039	cmss1	100	51.724	ENSSTOG00000019366	CMSS1	100	50.000	Ictidomys_tridecemlineatus
ENSCVAG00000005039	cmss1	100	51.042	ENSJJAG00000014894	Cmss1	90	60.891	Jaculus_jaculus
ENSCVAG00000005039	cmss1	93	65.056	ENSKMAG00000002390	cmss1	94	65.625	Kryptolebias_marmoratus
ENSCVAG00000005039	cmss1	93	65.314	ENSLBEG00000006298	cmss1	95	65.637	Labrus_bergylta
ENSCVAG00000005039	cmss1	77	63.229	ENSLACG00000009293	CMSS1	88	65.347	Latimeria_chalumnae
ENSCVAG00000005039	cmss1	100	51.389	ENSLOCG00000009391	cmss1	100	50.865	Lepisosteus_oculatus
ENSCVAG00000005039	cmss1	69	61.000	ENSLAFG00000017509	CMSS1	89	60.891	Loxodonta_africana
ENSCVAG00000005039	cmss1	100	52.234	ENSMFAG00000045006	CMSS1	100	50.865	Macaca_fascicularis
ENSCVAG00000005039	cmss1	100	51.890	ENSMMUG00000002939	CMSS1	100	50.519	Macaca_mulatta
ENSCVAG00000005039	cmss1	100	52.234	ENSMNEG00000031315	CMSS1	100	50.865	Macaca_nemestrina
ENSCVAG00000005039	cmss1	100	52.234	ENSMLEG00000033660	CMSS1	100	50.865	Mandrillus_leucophaeus
ENSCVAG00000005039	cmss1	100	75.601	ENSMAMG00000017176	cmss1	100	74.570	Mastacembelus_armatus
ENSCVAG00000005039	cmss1	100	73.973	ENSMZEG00005021886	cmss1	100	74.315	Maylandia_zebra
ENSCVAG00000005039	cmss1	70	63.366	ENSMGAG00000014360	CMSS1	89	63.366	Meleagris_gallopavo
ENSCVAG00000005039	cmss1	100	37.755	ENSMAUG00000020609	Cmss1	100	36.949	Mesocricetus_auratus
ENSCVAG00000005039	cmss1	100	54.110	ENSMICG00000048977	CMSS1	100	49.667	Microcebus_murinus
ENSCVAG00000005039	cmss1	100	51.178	ENSMOCG00000021937	Cmss1	100	50.340	Microtus_ochrogaster
ENSCVAG00000005039	cmss1	77	71.308	ENSMMOG00000019794	cmss1	98	66.538	Mola_mola
ENSCVAG00000005039	cmss1	86	55.870	ENSMODG00000002275	CMSS1	76	62.376	Monodelphis_domestica
ENSCVAG00000005039	cmss1	100	75.850	ENSMALG00000004250	cmss1	100	71.672	Monopterus_albus
ENSCVAG00000005039	cmss1	100	52.759	MGP_CAROLIEiJ_G0020824	Cmss1	100	49.660	Mus_caroli
ENSCVAG00000005039	cmss1	100	52.414	ENSMUSG00000022748	Cmss1	100	49.320	Mus_musculus
ENSCVAG00000005039	cmss1	100	52.069	MGP_PahariEiJ_G0016524	Cmss1	100	49.660	Mus_pahari
ENSCVAG00000005039	cmss1	100	52.069	MGP_SPRETEiJ_G0021724	Cmss1	100	48.980	Mus_spretus
ENSCVAG00000005039	cmss1	86	57.430	ENSMPUG00000011324	CMSS1	78	61.194	Mustela_putorius_furo
ENSCVAG00000005039	cmss1	69	61.386	ENSMLUG00000001131	CMSS1	78	61.275	Myotis_lucifugus
ENSCVAG00000005039	cmss1	100	50.347	ENSNGAG00000020316	Cmss1	100	50.173	Nannospalax_galili
ENSCVAG00000005039	cmss1	100	74.315	ENSNBRG00000003095	cmss1	100	74.658	Neolamprologus_brichardi
ENSCVAG00000005039	cmss1	100	52.921	ENSNLEG00000034172	CMSS1	100	51.557	Nomascus_leucogenys
ENSCVAG00000005039	cmss1	70	54.455	ENSMEUG00000014505	CMSS1	89	54.455	Notamacropus_eugenii
ENSCVAG00000005039	cmss1	100	52.249	ENSOPRG00000002986	CMSS1	100	51.903	Ochotona_princeps
ENSCVAG00000005039	cmss1	100	52.431	ENSODEG00000005226	-	100	51.736	Octodon_degus
ENSCVAG00000005039	cmss1	100	49.310	ENSODEG00000003558	-	100	49.310	Octodon_degus
ENSCVAG00000005039	cmss1	100	46.875	ENSODEG00000001853	-	100	46.181	Octodon_degus
ENSCVAG00000005039	cmss1	100	44.674	ENSODEG00000009446	-	100	43.750	Octodon_degus
ENSCVAG00000005039	cmss1	91	76.718	ENSONIG00000006678	cmss1	98	78.599	Oreochromis_niloticus
ENSCVAG00000005039	cmss1	77	60.360	ENSOANG00000007529	CMSS1	87	61.881	Ornithorhynchus_anatinus
ENSCVAG00000005039	cmss1	95	52.727	ENSOCUG00000025366	CMSS1	73	61.386	Oryctolagus_cuniculus
ENSCVAG00000005039	cmss1	100	72.664	ENSORLG00000020340	cmss1	100	72.664	Oryzias_latipes
ENSCVAG00000005039	cmss1	77	70.588	ENSORLG00020012235	cmss1	99	67.382	Oryzias_latipes_hni
ENSCVAG00000005039	cmss1	92	63.433	ENSORLG00015015551	cmss1	76	72.906	Oryzias_latipes_hsok
ENSCVAG00000005039	cmss1	100	73.630	ENSOMEG00000012555	cmss1	100	73.288	Oryzias_melastigma
ENSCVAG00000005039	cmss1	70	61.881	ENSOGAG00000002045	CMSS1	89	61.881	Otolemur_garnettii
ENSCVAG00000005039	cmss1	70	61.576	ENSOARG00000017899	CMSS1	70	61.576	Ovis_aries
ENSCVAG00000005039	cmss1	98	51.418	ENSPPAG00000038515	CMSS1	74	60.891	Pan_paniscus
ENSCVAG00000005039	cmss1	100	53.633	ENSPPRG00000016767	CMSS1	100	53.103	Panthera_pardus
ENSCVAG00000005039	cmss1	100	53.287	ENSPTIG00000018274	CMSS1	100	52.759	Panthera_tigris_altaica
ENSCVAG00000005039	cmss1	100	52.577	ENSPTRG00000015157	CMSS1	100	51.211	Pan_troglodytes
ENSCVAG00000005039	cmss1	70	61.386	ENSPANG00000019980	CMSS1	80	61.386	Papio_anubis
ENSCVAG00000005039	cmss1	97	58.423	ENSPKIG00000012609	cmss1	97	57.736	Paramormyrops_kingsleyae
ENSCVAG00000005039	cmss1	70	65.347	ENSPSIG00000003849	CMSS1	88	65.347	Pelodiscus_sinensis
ENSCVAG00000005039	cmss1	70	77.451	ENSPMGG00000010286	cmss1	88	77.451	Periophthalmus_magnuspinnatus
ENSCVAG00000005039	cmss1	100	53.082	ENSPEMG00000016384	Cmss1	100	51.712	Peromyscus_maniculatus_bairdii
ENSCVAG00000005039	cmss1	71	50.490	ENSPMAG00000001146	cmss1	99	50.739	Petromyzon_marinus
ENSCVAG00000005039	cmss1	70	63.366	ENSPCIG00000015656	CMSS1	77	63.366	Phascolarctos_cinereus
ENSCVAG00000005039	cmss1	100	82.639	ENSPFOG00000016849	cmss1	100	81.597	Poecilia_formosa
ENSCVAG00000005039	cmss1	100	82.292	ENSPLAG00000008323	cmss1	100	81.250	Poecilia_latipinna
ENSCVAG00000005039	cmss1	100	83.681	ENSPMEG00000021020	cmss1	100	83.681	Poecilia_mexicana
ENSCVAG00000005039	cmss1	91	83.525	ENSPREG00000007618	cmss1	87	84.436	Poecilia_reticulata
ENSCVAG00000005039	cmss1	100	52.921	ENSPPYG00000013606	CMSS1	100	51.557	Pongo_abelii
ENSCVAG00000005039	cmss1	100	54.138	ENSPCOG00000020035	CMSS1	100	52.941	Propithecus_coquereli
ENSCVAG00000005039	cmss1	100	46.048	ENSPVAG00000017031	CMSS1	100	45.329	Pteropus_vampyrus
ENSCVAG00000005039	cmss1	91	72.556	ENSPNYG00000013428	cmss1	97	72.932	Pundamilia_nyererei
ENSCVAG00000005039	cmss1	100	58.844	ENSPNAG00000007912	cmss1	100	58.844	Pygocentrus_nattereri
ENSCVAG00000005039	cmss1	86	55.870	ENSRNOG00000027888	Cmss1	79	61.386	Rattus_norvegicus
ENSCVAG00000005039	cmss1	100	52.234	ENSRBIG00000037931	CMSS1	100	51.211	Rhinopithecus_bieti
ENSCVAG00000005039	cmss1	100	52.234	ENSRROG00000042910	CMSS1	100	51.211	Rhinopithecus_roxellana
ENSCVAG00000005039	cmss1	83	57.500	ENSSBOG00000030980	CMSS1	88	57.447	Saimiri_boliviensis_boliviensis
ENSCVAG00000005039	cmss1	70	64.356	ENSSHAG00000009321	CMSS1	80	64.356	Sarcophilus_harrisii
ENSCVAG00000005039	cmss1	100	63.448	ENSSFOG00015001509	cmss1	100	63.356	Scleropages_formosus
ENSCVAG00000005039	cmss1	100	73.630	ENSSMAG00000001653	cmss1	100	73.630	Scophthalmus_maximus
ENSCVAG00000005039	cmss1	100	76.897	ENSSDUG00000007719	cmss1	100	78.966	Seriola_dumerili
ENSCVAG00000005039	cmss1	91	72.694	ENSSLDG00000012300	cmss1	88	73.946	Seriola_lalandi_dorsalis
ENSCVAG00000005039	cmss1	100	43.403	ENSSARG00000003584	CMSS1	100	43.448	Sorex_araneus
ENSCVAG00000005039	cmss1	70	62.871	ENSSPUG00000003865	CMSS1	89	62.871	Sphenodon_punctatus
ENSCVAG00000005039	cmss1	95	75.547	ENSSPAG00000019182	cmss1	76	74.615	Stegastes_partitus
ENSCVAG00000005039	cmss1	100	52.397	ENSSSCG00000011970	CMSS1	100	51.379	Sus_scrofa
ENSCVAG00000005039	cmss1	75	59.459	ENSTGUG00000013635	CMSS1	88	61.386	Taeniopygia_guttata
ENSCVAG00000005039	cmss1	100	68.056	ENSTRUG00000015265	cmss1	100	68.403	Takifugu_rubripes
ENSCVAG00000005039	cmss1	70	74.877	ENSTNIG00000002880	cmss1	82	71.930	Tetraodon_nigroviridis
ENSCVAG00000005039	cmss1	100	38.194	ENSTBEG00000016722	CMSS1	100	38.194	Tupaia_belangeri
ENSCVAG00000005039	cmss1	100	52.234	ENSTTRG00000001562	CMSS1	100	51.042	Tursiops_truncatus
ENSCVAG00000005039	cmss1	88	55.731	ENSUAMG00000024209	CMSS1	91	61.881	Ursus_americanus
ENSCVAG00000005039	cmss1	88	55.336	ENSUMAG00000001983	CMSS1	78	61.386	Ursus_maritimus
ENSCVAG00000005039	cmss1	56	61.250	ENSVPAG00000000263	CMSS1	57	61.250	Vicugna_pacos
ENSCVAG00000005039	cmss1	83	57.676	ENSVVUG00000021647	-	82	61.881	Vulpes_vulpes
ENSCVAG00000005039	cmss1	70	60.891	ENSVVUG00000007776	-	80	60.891	Vulpes_vulpes
ENSCVAG00000005039	cmss1	100	54.514	ENSXETG00000011858	cmss1	100	53.819	Xenopus_tropicalis
ENSCVAG00000005039	cmss1	95	79.562	ENSXCOG00000018724	cmss1	88	81.250	Xiphophorus_couchianus
ENSCVAG00000005039	cmss1	93	80.150	ENSXMAG00000011243	cmss1	96	81.250	Xiphophorus_maculatus