EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000005046 (Gene tree)
Gene ID: 107087113
Gene Symbol: larp1b
Alias: fc76b04|wu:fc76b04
Full Name: la-related protein 1B-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 33574 bases
Position: chrKL652673.1:982781-1016354
Accession: 107087113
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000003787	La	PF05383.17	1e-20	1	1
ENSCVAP00000003806	La	PF05383.17	1.1e-20	1	1
ENSCVAP00000022371	La	PF05383.17	1.1e-20	1	1
ENSCVAP00000022392	La	PF05383.17	1.1e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000009450	-	4733	-	ENSCVAP00000003787	1045 (aa)	-	-
ENSCVAT00000009479	-	4467	-	ENSCVAP00000022371	1103 (aa)	-	-
ENSCVAT00000009397	-	4907	-	ENSCVAP00000022392	1103 (aa)	-	-
ENSCVAT00000009420	-	4832	XM_015378495	ENSCVAP00000003806	1078 (aa)	XP_015233981	UPI0007427E28

Gene Model

Click here to download ENSCVAG00000005046's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000005046's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000005046	larp1b	92	52.290	ENSCVAG00000022687	larp1	91	51.396

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000005046	larp1b	91	53.095	ENSG00000138709	LARP1B	97	55.484	Homo_sapiens
ENSCVAG00000005046	larp1b	100	78.428	ENSAPOG00000020101	larp1b	100	82.598	Acanthochromis_polyacanthus
ENSCVAG00000005046	larp1b	53	52.730	ENSAMEG00000002748	LARP1B	99	52.389	Ailuropoda_melanoleuca
ENSCVAG00000005046	larp1b	94	80.225	ENSACIG00000023890	larp1b	100	80.726	Amphilophus_citrinellus
ENSCVAG00000005046	larp1b	90	73.585	ENSAOCG00000014268	larp1b	99	73.795	Amphiprion_ocellaris
ENSCVAG00000005046	larp1b	100	79.155	ENSAPEG00000004126	larp1b	100	79.063	Amphiprion_percula
ENSCVAG00000005046	larp1b	100	77.972	ENSATEG00000017849	larp1b	100	77.696	Anabas_testudineus
ENSCVAG00000005046	larp1b	83	53.651	ENSAPLG00000010129	LARP1B	100	53.165	Anas_platyrhynchos
ENSCVAG00000005046	larp1b	84	56.558	ENSACAG00000011338	LARP1B	93	56.243	Anolis_carolinensis
ENSCVAG00000005046	larp1b	70	49.486	ENSANAG00000034618	LARP1B	91	48.694	Aotus_nancymaae
ENSCVAG00000005046	larp1b	100	76.874	ENSACLG00000011948	larp1b	100	77.057	Astatotilapia_calliptera
ENSCVAG00000005046	larp1b	93	56.114	ENSAMXG00000006805	larp1b	86	60.377	Astyanax_mexicanus
ENSCVAG00000005046	larp1b	87	56.237	ENSBTAG00000012135	LARP1B	95	51.750	Bos_taurus
ENSCVAG00000005046	larp1b	83	55.870	ENSCJAG00000003338	LARP1B	99	55.995	Callithrix_jacchus
ENSCVAG00000005046	larp1b	83	58.931	ENSCAFG00000003831	LARP1B	99	58.087	Canis_familiaris
ENSCVAG00000005046	larp1b	86	55.714	ENSCAFG00020018899	LARP1B	95	57.533	Canis_lupus_dingo
ENSCVAG00000005046	larp1b	85	55.659	ENSCHIG00000023144	LARP1B	99	54.305	Capra_hircus
ENSCVAG00000005046	larp1b	84	55.380	ENSCCAG00000021948	LARP1B	97	55.819	Cebus_capucinus
ENSCVAG00000005046	larp1b	82	55.005	ENSCATG00000013541	LARP1B	97	54.672	Cercocebus_atys
ENSCVAG00000005046	larp1b	82	55.794	ENSCSAG00000003582	LARP1B	97	55.460	Chlorocebus_sabaeus
ENSCVAG00000005046	larp1b	75	56.485	ENSCHOG00000005354	LARP1B	97	52.137	Choloepus_hoffmanni
ENSCVAG00000005046	larp1b	91	53.996	ENSCPBG00000017480	LARP1B	90	55.511	Chrysemys_picta_bellii
ENSCVAG00000005046	larp1b	82	55.629	ENSCANG00000026958	LARP1B	97	54.426	Colobus_angolensis_palliatus
ENSCVAG00000005046	larp1b	100	73.098	ENSCSEG00000013519	larp1b	100	73.279	Cynoglossus_semilaevis
ENSCVAG00000005046	larp1b	91	68.240	ENSDARG00000061169	larp1b	92	62.293	Danio_rerio
ENSCVAG00000005046	larp1b	50	49.470	ENSDNOG00000018765	-	98	51.471	Dasypus_novemcinctus
ENSCVAG00000005046	larp1b	75	53.857	ENSETEG00000012497	LARP1B	73	54.425	Echinops_telfairi
ENSCVAG00000005046	larp1b	88	45.463	ENSEBUG00000003668	larp1b	96	45.029	Eptatretus_burgeri
ENSCVAG00000005046	larp1b	85	55.428	ENSEASG00005018106	LARP1B	99	54.871	Equus_asinus_asinus
ENSCVAG00000005046	larp1b	90	54.990	ENSECAG00000001088	LARP1B	84	55.260	Equus_caballus
ENSCVAG00000005046	larp1b	88	51.165	ENSELUG00000023774	larp1b	99	53.194	Esox_lucius
ENSCVAG00000005046	larp1b	50	50.441	ENSFCAG00000014650	-	99	50.276	Felis_catus
ENSCVAG00000005046	larp1b	85	52.599	ENSFALG00000008098	LARP1B	96	53.048	Ficedula_albicollis
ENSCVAG00000005046	larp1b	100	86.538	ENSFHEG00000010264	larp1b	97	86.081	Fundulus_heteroclitus
ENSCVAG00000005046	larp1b	87	69.492	ENSGMOG00000005207	larp1b	85	74.539	Gadus_morhua
ENSCVAG00000005046	larp1b	87	53.814	ENSGALG00000010207	LARP1B	90	53.299	Gallus_gallus
ENSCVAG00000005046	larp1b	89	82.051	ENSGAFG00000012012	larp1b	100	86.523	Gambusia_affinis
ENSCVAG00000005046	larp1b	100	66.133	ENSGACG00000004609	larp1b	100	67.556	Gasterosteus_aculeatus
ENSCVAG00000005046	larp1b	88	55.589	ENSGAGG00000017209	LARP1B	90	55.355	Gopherus_agassizii
ENSCVAG00000005046	larp1b	84	55.111	ENSGGOG00000015900	LARP1B	97	55.484	Gorilla_gorilla
ENSCVAG00000005046	larp1b	100	77.036	ENSHBUG00000009730	larp1b	100	81.187	Haplochromis_burtoni
ENSCVAG00000005046	larp1b	69	77.978	ENSHCOG00000000918	larp1b	96	80.673	Hippocampus_comes
ENSCVAG00000005046	larp1b	93	61.249	ENSIPUG00000012138	larp1b	87	61.404	Ictalurus_punctatus
ENSCVAG00000005046	larp1b	99	75.465	ENSKMAG00000011589	larp1b	100	74.257	Kryptolebias_marmoratus
ENSCVAG00000005046	larp1b	100	76.514	ENSLBEG00000005655	larp1b	100	76.697	Labrus_bergylta
ENSCVAG00000005046	larp1b	90	58.907	ENSLACG00000015247	LARP1B	88	59.353	Latimeria_chalumnae
ENSCVAG00000005046	larp1b	90	57.380	ENSLOCG00000010684	larp1b	94	58.564	Lepisosteus_oculatus
ENSCVAG00000005046	larp1b	82	56.189	ENSMFAG00000002218	LARP1B	97	55.854	Macaca_fascicularis
ENSCVAG00000005046	larp1b	82	56.176	ENSMMUG00000021347	LARP1B	97	55.949	Macaca_mulatta
ENSCVAG00000005046	larp1b	82	52.081	ENSMNEG00000030406	LARP1B	81	60.756	Macaca_nemestrina
ENSCVAG00000005046	larp1b	82	54.832	ENSMLEG00000009306	LARP1B	97	54.863	Mandrillus_leucophaeus
ENSCVAG00000005046	larp1b	99	78.128	ENSMAMG00000000081	larp1b	99	77.943	Mastacembelus_armatus
ENSCVAG00000005046	larp1b	77	77.695	ENSMZEG00005002545	larp1b	100	80.435	Maylandia_zebra
ENSCVAG00000005046	larp1b	82	50.648	ENSMGAG00000004809	LARP1B	100	50.323	Meleagris_gallopavo
ENSCVAG00000005046	larp1b	85	55.843	ENSMICG00000036111	LARP1B	97	57.405	Microcebus_murinus
ENSCVAG00000005046	larp1b	50	38.393	ENSMICG00000028052	-	97	39.033	Microcebus_murinus
ENSCVAG00000005046	larp1b	91	54.288	ENSMODG00000012300	LARP1B	89	54.231	Monodelphis_domestica
ENSCVAG00000005046	larp1b	100	76.406	ENSMALG00000003638	larp1b	100	76.221	Monopterus_albus
ENSCVAG00000005046	larp1b	92	54.015	ENSMPUG00000017365	LARP1B	85	56.004	Mustela_putorius_furo
ENSCVAG00000005046	larp1b	84	55.415	ENSMLUG00000010229	LARP1B	99	54.890	Myotis_lucifugus
ENSCVAG00000005046	larp1b	94	71.990	ENSNBRG00000023846	larp1b	100	74.651	Neolamprologus_brichardi
ENSCVAG00000005046	larp1b	84	54.336	ENSNLEG00000013819	LARP1B	97	55.209	Nomascus_leucogenys
ENSCVAG00000005046	larp1b	64	57.511	ENSMEUG00000010308	LARP1B	74	58.284	Notamacropus_eugenii
ENSCVAG00000005046	larp1b	76	52.326	ENSOPRG00000005478	LARP1B	89	51.190	Ochotona_princeps
ENSCVAG00000005046	larp1b	88	78.119	ENSONIG00000012386	larp1b	100	77.630	Oreochromis_niloticus
ENSCVAG00000005046	larp1b	85	54.812	ENSOCUG00000013330	LARP1B	95	55.930	Oryctolagus_cuniculus
ENSCVAG00000005046	larp1b	96	74.480	ENSORLG00000017954	larp1b	100	72.628	Oryzias_latipes
ENSCVAG00000005046	larp1b	98	73.816	ENSORLG00020013081	larp1b	100	72.719	Oryzias_latipes_hni
ENSCVAG00000005046	larp1b	98	73.684	ENSORLG00015009580	larp1b	100	72.167	Oryzias_latipes_hsok
ENSCVAG00000005046	larp1b	97	76.560	ENSOMEG00000004210	larp1b	100	75.551	Oryzias_melastigma
ENSCVAG00000005046	larp1b	83	57.768	ENSOGAG00000005771	LARP1B	100	57.002	Otolemur_garnettii
ENSCVAG00000005046	larp1b	84	55.836	ENSOARG00000015300	LARP1B	97	55.892	Ovis_aries
ENSCVAG00000005046	larp1b	84	55.111	ENSPPAG00000030439	LARP1B	97	55.484	Pan_paniscus
ENSCVAG00000005046	larp1b	50	50.441	ENSPPRG00000002743	-	99	50.276	Panthera_pardus
ENSCVAG00000005046	larp1b	50	50.441	ENSPTIG00000011225	LARP1B	99	50.276	Panthera_tigris_altaica
ENSCVAG00000005046	larp1b	84	55.111	ENSPTRG00000016437	LARP1B	97	55.484	Pan_troglodytes
ENSCVAG00000005046	larp1b	82	56.189	ENSPANG00000012488	LARP1B	97	55.854	Papio_anubis
ENSCVAG00000005046	larp1b	87	54.153	ENSPKIG00000014360	larp1b	96	52.822	Paramormyrops_kingsleyae
ENSCVAG00000005046	larp1b	87	55.876	ENSPSIG00000012885	LARP1B	99	55.613	Pelodiscus_sinensis
ENSCVAG00000005046	larp1b	78	70.788	ENSPMGG00000007207	larp1b	89	75.000	Periophthalmus_magnuspinnatus
ENSCVAG00000005046	larp1b	64	55.263	ENSPMAG00000002700	larp1b	96	50.103	Petromyzon_marinus
ENSCVAG00000005046	larp1b	86	57.172	ENSPCIG00000026516	LARP1B	94	63.611	Phascolarctos_cinereus
ENSCVAG00000005046	larp1b	63	84.949	ENSPFOG00000022837	-	99	85.094	Poecilia_formosa
ENSCVAG00000005046	larp1b	100	86.071	ENSPFOG00000019519	larp1b	100	86.518	Poecilia_formosa
ENSCVAG00000005046	larp1b	100	85.936	ENSPLAG00000007115	larp1b	100	86.393	Poecilia_latipinna
ENSCVAG00000005046	larp1b	100	86.131	ENSPMEG00000001224	larp1b	100	86.588	Poecilia_mexicana
ENSCVAG00000005046	larp1b	84	54.536	ENSPCAG00000007546	LARP1B	97	55.016	Procavia_capensis
ENSCVAG00000005046	larp1b	75	60.284	ENSPCOG00000021874	LARP1B	96	68.067	Propithecus_coquereli
ENSCVAG00000005046	larp1b	84	51.589	ENSPVAG00000005373	LARP1B	97	51.948	Pteropus_vampyrus
ENSCVAG00000005046	larp1b	77	76.190	ENSPNYG00000017357	larp1b	100	78.841	Pundamilia_nyererei
ENSCVAG00000005046	larp1b	94	61.052	ENSPNAG00000008823	larp1b	87	63.397	Pygocentrus_nattereri
ENSCVAG00000005046	larp1b	50	48.850	ENSRBIG00000039982	-	99	48.619	Rhinopithecus_bieti
ENSCVAG00000005046	larp1b	82	56.189	ENSRROG00000030771	LARP1B	97	55.854	Rhinopithecus_roxellana
ENSCVAG00000005046	larp1b	62	52.825	ENSSHAG00000014474	LARP1B	99	52.908	Sarcophilus_harrisii
ENSCVAG00000005046	larp1b	84	79.569	ENSSMAG00000006347	larp1b	93	79.303	Scophthalmus_maximus
ENSCVAG00000005046	larp1b	100	77.190	ENSSDUG00000004182	larp1b	100	77.737	Seriola_dumerili
ENSCVAG00000005046	larp1b	95	71.329	ENSSLDG00000014613	larp1b	96	78.653	Seriola_lalandi_dorsalis
ENSCVAG00000005046	larp1b	80	56.636	ENSSPUG00000011837	LARP1B	93	55.451	Sphenodon_punctatus
ENSCVAG00000005046	larp1b	100	78.435	ENSSPAG00000017772	larp1b	100	80.094	Stegastes_partitus
ENSCVAG00000005046	larp1b	92	53.282	ENSSSCG00000034280	LARP1B	98	79.310	Sus_scrofa
ENSCVAG00000005046	larp1b	71	58.768	ENSTGUG00000002098	-	83	60.962	Taeniopygia_guttata
ENSCVAG00000005046	larp1b	99	72.576	ENSTRUG00000005612	larp1b	99	71.006	Takifugu_rubripes
ENSCVAG00000005046	larp1b	90	71.172	ENSTNIG00000012398	larp1b	99	75.881	Tetraodon_nigroviridis
ENSCVAG00000005046	larp1b	63	51.954	ENSTBEG00000004177	LARP1B	74	50.938	Tupaia_belangeri
ENSCVAG00000005046	larp1b	76	55.787	ENSTTRG00000012984	LARP1B	89	56.325	Tursiops_truncatus
ENSCVAG00000005046	larp1b	85	56.844	ENSUMAG00000007373	LARP1B	95	57.906	Ursus_maritimus
ENSCVAG00000005046	larp1b	67	55.000	ENSVPAG00000007223	LARP1B	70	72.289	Vicugna_pacos
ENSCVAG00000005046	larp1b	86	55.714	ENSVVUG00000011307	LARP1B	99	56.257	Vulpes_vulpes
ENSCVAG00000005046	larp1b	92	50.794	ENSXETG00000022512	larp1b	93	51.696	Xenopus_tropicalis
ENSCVAG00000005046	larp1b	89	76.800	ENSXCOG00000004435	larp1b	96	77.612	Xiphophorus_couchianus
ENSCVAG00000005046	larp1b	100	85.506	ENSXMAG00000008150	larp1b	100	86.053	Xiphophorus_maculatus