EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000005055 (Gene tree)
Gene ID: 107103226
Gene Symbol: sf3b6
Alias: sf3b14|zgc:86708
Full Name: splicing factor 3b subunit 6
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 2440 bases
Position: chrKL653900.1:156569-159008
Accession: 107103226
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000022367	RRM_1	PF00076.22	1.1e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000009463	-	378	XM_015402802	ENSCVAP00000022367	125 (aa)	XP_015258288	UPI000644980D

Gene Model

Click here to download ENSCVAG00000005055's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000005055's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000005055	sf3b6	59	32.051	ENSCVAG00000012647	snrpb2	53	30.556

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000005055	sf3b6	100	99.200	ENSG00000115128	SF3B6	100	99.200	Homo_sapiens
ENSCVAG00000005055	sf3b6	100	99.200	ENSAPOG00000023788	sf3b6	100	99.200	Acanthochromis_polyacanthus
ENSCVAG00000005055	sf3b6	100	99.200	ENSAMEG00000002786	SF3B6	100	99.200	Ailuropoda_melanoleuca
ENSCVAG00000005055	sf3b6	100	99.200	ENSACIG00000012608	sf3b6	100	99.200	Amphilophus_citrinellus
ENSCVAG00000005055	sf3b6	100	99.200	ENSAOCG00000013394	sf3b6	100	99.200	Amphiprion_ocellaris
ENSCVAG00000005055	sf3b6	100	99.200	ENSAPEG00000015311	sf3b6	100	99.200	Amphiprion_percula
ENSCVAG00000005055	sf3b6	100	99.200	ENSATEG00000016569	sf3b6	100	99.200	Anabas_testudineus
ENSCVAG00000005055	sf3b6	100	99.200	ENSACAG00000011677	SF3B6	100	99.200	Anolis_carolinensis
ENSCVAG00000005055	sf3b6	100	99.200	ENSANAG00000027284	SF3B6	95	99.200	Aotus_nancymaae
ENSCVAG00000005055	sf3b6	100	99.200	ENSACLG00000007793	sf3b6	100	99.200	Astatotilapia_calliptera
ENSCVAG00000005055	sf3b6	100	99.200	ENSAMXG00000034888	sf3b6	100	99.200	Astyanax_mexicanus
ENSCVAG00000005055	sf3b6	100	97.600	ENSBTAG00000049128	-	100	97.600	Bos_taurus
ENSCVAG00000005055	sf3b6	100	99.200	ENSBTAG00000003407	SF3B6	100	99.200	Bos_taurus
ENSCVAG00000005055	sf3b6	100	67.200	WBGene00016808	C50D2.5	91	67.200	Caenorhabditis_elegans
ENSCVAG00000005055	sf3b6	100	99.200	ENSCJAG00000007716	SF3B6	100	99.200	Callithrix_jacchus
ENSCVAG00000005055	sf3b6	100	99.200	ENSCAFG00000003957	SF3B6	100	99.200	Canis_familiaris
ENSCVAG00000005055	sf3b6	100	99.200	ENSCAFG00020025576	SF3B6	100	99.200	Canis_lupus_dingo
ENSCVAG00000005055	sf3b6	100	99.200	ENSCHIG00000009902	SF3B6	100	99.200	Capra_hircus
ENSCVAG00000005055	sf3b6	100	99.200	ENSTSYG00000013978	SF3B6	100	99.200	Carlito_syrichta
ENSCVAG00000005055	sf3b6	97	95.868	ENSCAPG00000016302	SF3B6	99	95.868	Cavia_aperea
ENSCVAG00000005055	sf3b6	100	99.200	ENSCPOG00000008016	SF3B6	100	99.200	Cavia_porcellus
ENSCVAG00000005055	sf3b6	99	93.548	ENSCCAG00000018894	-	96	93.548	Cebus_capucinus
ENSCVAG00000005055	sf3b6	100	99.200	ENSCCAG00000036653	SF3B6	100	99.200	Cebus_capucinus
ENSCVAG00000005055	sf3b6	100	99.200	ENSCATG00000030936	SF3B6	100	99.200	Cercocebus_atys
ENSCVAG00000005055	sf3b6	100	99.200	ENSCLAG00000014512	SF3B6	100	99.200	Chinchilla_lanigera
ENSCVAG00000005055	sf3b6	100	99.200	ENSCSAG00000008390	SF3B6	100	99.200	Chlorocebus_sabaeus
ENSCVAG00000005055	sf3b6	99	73.387	ENSCHOG00000013886	-	99	73.387	Choloepus_hoffmanni
ENSCVAG00000005055	sf3b6	100	99.200	ENSCHOG00000000689	SF3B6	100	99.200	Choloepus_hoffmanni
ENSCVAG00000005055	sf3b6	100	99.200	ENSCPBG00000020042	SF3B6	100	99.200	Chrysemys_picta_bellii
ENSCVAG00000005055	sf3b6	98	80.488	ENSCING00000012689	-	97	80.488	Ciona_intestinalis
ENSCVAG00000005055	sf3b6	100	99.200	ENSCANG00000030559	SF3B6	100	99.200	Colobus_angolensis_palliatus
ENSCVAG00000005055	sf3b6	100	99.200	ENSCGRG00001014595	Sf3b6	100	99.200	Cricetulus_griseus_chok1gshd
ENSCVAG00000005055	sf3b6	100	99.200	ENSCGRG00000005272	Sf3b6	100	99.200	Cricetulus_griseus_crigri
ENSCVAG00000005055	sf3b6	100	98.400	ENSCSEG00000019017	sf3b6	100	98.400	Cynoglossus_semilaevis
ENSCVAG00000005055	sf3b6	100	99.200	ENSDARG00000009753	sf3b6	100	99.200	Danio_rerio
ENSCVAG00000005055	sf3b6	100	99.200	ENSDNOG00000007148	SF3B6	100	99.200	Dasypus_novemcinctus
ENSCVAG00000005055	sf3b6	99	81.746	ENSDORG00000029761	-	98	81.746	Dipodomys_ordii
ENSCVAG00000005055	sf3b6	100	99.200	ENSDORG00000009772	Sf3b6	100	99.200	Dipodomys_ordii
ENSCVAG00000005055	sf3b6	99	81.746	ENSDORG00000027390	-	98	81.746	Dipodomys_ordii
ENSCVAG00000005055	sf3b6	92	76.522	FBgn0035692	Sf3b6	95	76.522	Drosophila_melanogaster
ENSCVAG00000005055	sf3b6	92	91.304	ENSEBUG00000004424	sf3b6	91	91.304	Eptatretus_burgeri
ENSCVAG00000005055	sf3b6	100	88.000	ENSEASG00005008061	-	100	88.000	Equus_asinus_asinus
ENSCVAG00000005055	sf3b6	100	99.200	ENSEASG00005009993	SF3B6	100	99.200	Equus_asinus_asinus
ENSCVAG00000005055	sf3b6	79	85.859	ENSECAG00000027755	-	85	85.859	Equus_caballus
ENSCVAG00000005055	sf3b6	81	95.050	ENSECAG00000015618	SF3B6	93	95.050	Equus_caballus
ENSCVAG00000005055	sf3b6	100	99.200	ENSELUG00000010379	sf3b6	100	99.200	Esox_lucius
ENSCVAG00000005055	sf3b6	100	99.200	ENSFCAG00000031365	SF3B6	100	99.200	Felis_catus
ENSCVAG00000005055	sf3b6	100	99.200	ENSFALG00000001651	SF3B6	100	99.200	Ficedula_albicollis
ENSCVAG00000005055	sf3b6	100	99.200	ENSFDAG00000007864	SF3B6	100	99.200	Fukomys_damarensis
ENSCVAG00000005055	sf3b6	100	100.000	ENSFHEG00000000685	sf3b6	100	100.000	Fundulus_heteroclitus
ENSCVAG00000005055	sf3b6	100	98.400	ENSGMOG00000005123	sf3b6	100	98.400	Gadus_morhua
ENSCVAG00000005055	sf3b6	73	98.901	ENSGALG00000016501	SF3B6	100	98.901	Gallus_gallus
ENSCVAG00000005055	sf3b6	100	99.200	ENSGAFG00000009334	sf3b6	100	99.200	Gambusia_affinis
ENSCVAG00000005055	sf3b6	100	98.400	ENSGACG00000004803	sf3b6	100	98.400	Gasterosteus_aculeatus
ENSCVAG00000005055	sf3b6	100	99.200	ENSGAGG00000012240	SF3B6	100	99.200	Gopherus_agassizii
ENSCVAG00000005055	sf3b6	100	99.200	ENSGGOG00000040806	SF3B6	100	99.200	Gorilla_gorilla
ENSCVAG00000005055	sf3b6	100	99.200	ENSHBUG00000012556	sf3b6	100	99.200	Haplochromis_burtoni
ENSCVAG00000005055	sf3b6	100	99.200	ENSHGLG00000014895	SF3B14	100	99.200	Heterocephalus_glaber_female
ENSCVAG00000005055	sf3b6	100	99.200	ENSHGLG00100008639	SF3B14	100	99.200	Heterocephalus_glaber_male
ENSCVAG00000005055	sf3b6	100	100.000	ENSHCOG00000019962	sf3b6	100	100.000	Hippocampus_comes
ENSCVAG00000005055	sf3b6	100	99.200	ENSIPUG00000023800	sf3b6	100	99.200	Ictalurus_punctatus
ENSCVAG00000005055	sf3b6	100	99.200	ENSJJAG00000021819	Sf3b6	100	99.200	Jaculus_jaculus
ENSCVAG00000005055	sf3b6	100	99.200	ENSKMAG00000004000	sf3b6	100	99.200	Kryptolebias_marmoratus
ENSCVAG00000005055	sf3b6	100	99.200	ENSLBEG00000022937	sf3b6	100	99.200	Labrus_bergylta
ENSCVAG00000005055	sf3b6	100	99.200	ENSLACG00000014326	SF3B6	100	99.200	Latimeria_chalumnae
ENSCVAG00000005055	sf3b6	100	99.200	ENSLOCG00000016481	sf3b6	100	99.200	Lepisosteus_oculatus
ENSCVAG00000005055	sf3b6	100	99.200	ENSLAFG00000029423	SF3B6	100	99.200	Loxodonta_africana
ENSCVAG00000005055	sf3b6	100	99.200	ENSMFAG00000038178	SF3B6	100	99.200	Macaca_fascicularis
ENSCVAG00000005055	sf3b6	100	99.200	ENSMMUG00000001282	SF3B6	100	99.200	Macaca_mulatta
ENSCVAG00000005055	sf3b6	100	99.200	ENSMNEG00000029050	SF3B6	100	99.200	Macaca_nemestrina
ENSCVAG00000005055	sf3b6	100	99.200	ENSMLEG00000019896	SF3B6	100	99.200	Mandrillus_leucophaeus
ENSCVAG00000005055	sf3b6	78	97.938	ENSMAMG00000007713	sf3b6	88	97.938	Mastacembelus_armatus
ENSCVAG00000005055	sf3b6	100	99.200	ENSMZEG00005003557	sf3b6	100	99.200	Maylandia_zebra
ENSCVAG00000005055	sf3b6	100	99.200	ENSMGAG00000014057	SF3B6	100	99.200	Meleagris_gallopavo
ENSCVAG00000005055	sf3b6	100	99.200	ENSMAUG00000000586	-	100	99.200	Mesocricetus_auratus
ENSCVAG00000005055	sf3b6	100	99.200	ENSMICG00000032874	SF3B6	100	99.200	Microcebus_murinus
ENSCVAG00000005055	sf3b6	100	99.200	ENSMOCG00000014338	Sf3b6	100	99.200	Microtus_ochrogaster
ENSCVAG00000005055	sf3b6	100	100.000	ENSMMOG00000015653	sf3b6	100	100.000	Mola_mola
ENSCVAG00000005055	sf3b6	100	92.000	ENSMODG00000002144	SF3B6	100	92.000	Monodelphis_domestica
ENSCVAG00000005055	sf3b6	100	100.000	ENSMALG00000019642	sf3b6	67	100.000	Monopterus_albus
ENSCVAG00000005055	sf3b6	100	99.200	MGP_CAROLIEiJ_G0017590	Sf3b6	100	99.200	Mus_caroli
ENSCVAG00000005055	sf3b6	100	99.200	ENSMUSG00000037361	Sf3b6	100	99.200	Mus_musculus
ENSCVAG00000005055	sf3b6	100	99.200	MGP_PahariEiJ_G0029348	Sf3b6	100	99.200	Mus_pahari
ENSCVAG00000005055	sf3b6	100	99.200	MGP_SPRETEiJ_G0018434	Sf3b6	100	99.200	Mus_spretus
ENSCVAG00000005055	sf3b6	100	99.200	ENSMPUG00000013957	SF3B6	100	99.200	Mustela_putorius_furo
ENSCVAG00000005055	sf3b6	100	97.600	ENSMLUG00000002473	SF3B6	100	97.600	Myotis_lucifugus
ENSCVAG00000005055	sf3b6	100	99.200	ENSNGAG00000020256	Sf3b6	100	99.200	Nannospalax_galili
ENSCVAG00000005055	sf3b6	100	99.200	ENSNBRG00000018244	sf3b6	100	99.200	Neolamprologus_brichardi
ENSCVAG00000005055	sf3b6	100	99.200	ENSNLEG00000000815	-	100	99.200	Nomascus_leucogenys
ENSCVAG00000005055	sf3b6	87	99.083	ENSODEG00000009547	SF3B6	92	99.083	Octodon_degus
ENSCVAG00000005055	sf3b6	100	99.200	ENSONIG00000001219	sf3b6	100	99.200	Oreochromis_niloticus
ENSCVAG00000005055	sf3b6	100	99.200	ENSOANG00000007627	SF3B6	100	99.200	Ornithorhynchus_anatinus
ENSCVAG00000005055	sf3b6	100	99.200	ENSOCUG00000022008	SF3B6	100	99.200	Oryctolagus_cuniculus
ENSCVAG00000005055	sf3b6	100	99.200	ENSORLG00000015955	sf3b6	100	99.200	Oryzias_latipes
ENSCVAG00000005055	sf3b6	100	99.200	ENSORLG00020005875	sf3b6	100	99.200	Oryzias_latipes_hni
ENSCVAG00000005055	sf3b6	100	99.200	ENSORLG00015001347	sf3b6	100	99.200	Oryzias_latipes_hsok
ENSCVAG00000005055	sf3b6	100	99.200	ENSOMEG00000014506	sf3b6	100	99.200	Oryzias_melastigma
ENSCVAG00000005055	sf3b6	100	99.200	ENSOGAG00000004468	SF3B6	100	99.200	Otolemur_garnettii
ENSCVAG00000005055	sf3b6	100	99.200	ENSOARG00000017819	SF3B6	100	99.200	Ovis_aries
ENSCVAG00000005055	sf3b6	100	99.200	ENSPPAG00000027816	SF3B6	100	99.200	Pan_paniscus
ENSCVAG00000005055	sf3b6	100	99.200	ENSPPRG00000023257	SF3B6	100	99.200	Panthera_pardus
ENSCVAG00000005055	sf3b6	100	99.200	ENSPTIG00000013322	SF3B6	100	99.200	Panthera_tigris_altaica
ENSCVAG00000005055	sf3b6	100	99.200	ENSPTRG00000011709	SF3B6	100	99.200	Pan_troglodytes
ENSCVAG00000005055	sf3b6	100	99.200	ENSPANG00000021963	SF3B6	100	99.200	Papio_anubis
ENSCVAG00000005055	sf3b6	100	99.200	ENSPKIG00000012311	sf3b6	100	99.200	Paramormyrops_kingsleyae
ENSCVAG00000005055	sf3b6	92	99.130	ENSPSIG00000017115	SF3B6	100	99.130	Pelodiscus_sinensis
ENSCVAG00000005055	sf3b6	78	97.938	ENSPMGG00000014621	sf3b6	81	97.938	Periophthalmus_magnuspinnatus
ENSCVAG00000005055	sf3b6	100	99.200	ENSPEMG00000010308	Sf3b6	100	99.200	Peromyscus_maniculatus_bairdii
ENSCVAG00000005055	sf3b6	94	87.288	ENSPMAG00000006008	sf3b6	94	87.288	Petromyzon_marinus
ENSCVAG00000005055	sf3b6	100	99.200	ENSPCIG00000022128	-	100	99.200	Phascolarctos_cinereus
ENSCVAG00000005055	sf3b6	99	76.613	ENSPCIG00000015858	-	99	76.613	Phascolarctos_cinereus
ENSCVAG00000005055	sf3b6	100	99.200	ENSPFOG00000012494	sf3b6	100	99.200	Poecilia_formosa
ENSCVAG00000005055	sf3b6	100	99.200	ENSPLAG00000020460	sf3b6	100	99.200	Poecilia_latipinna
ENSCVAG00000005055	sf3b6	100	99.200	ENSPMEG00000004426	sf3b6	100	99.200	Poecilia_mexicana
ENSCVAG00000005055	sf3b6	100	99.200	ENSPPYG00000012603	SF3B6	100	99.200	Pongo_abelii
ENSCVAG00000005055	sf3b6	100	99.200	ENSPVAG00000011346	SF3B6	100	99.200	Pteropus_vampyrus
ENSCVAG00000005055	sf3b6	100	99.200	ENSPNYG00000021832	sf3b6	100	99.200	Pundamilia_nyererei
ENSCVAG00000005055	sf3b6	100	99.200	ENSPNAG00000008845	sf3b6	100	99.200	Pygocentrus_nattereri
ENSCVAG00000005055	sf3b6	100	84.000	ENSRNOG00000046172	Sf3b6	100	84.000	Rattus_norvegicus
ENSCVAG00000005055	sf3b6	100	99.200	ENSRBIG00000039598	SF3B6	100	99.200	Rhinopithecus_bieti
ENSCVAG00000005055	sf3b6	100	99.200	ENSRROG00000011368	SF3B6	100	99.200	Rhinopithecus_roxellana
ENSCVAG00000005055	sf3b6	100	99.200	ENSSBOG00000002914	SF3B6	100	99.200	Saimiri_boliviensis_boliviensis
ENSCVAG00000005055	sf3b6	100	99.200	ENSSFOG00015014370	sf3b6	100	99.200	Scleropages_formosus
ENSCVAG00000005055	sf3b6	100	99.200	ENSSMAG00000004566	sf3b6	100	99.200	Scophthalmus_maximus
ENSCVAG00000005055	sf3b6	100	99.200	ENSSDUG00000006538	sf3b6	100	99.200	Seriola_dumerili
ENSCVAG00000005055	sf3b6	100	99.200	ENSSLDG00000004494	sf3b6	100	99.200	Seriola_lalandi_dorsalis
ENSCVAG00000005055	sf3b6	100	99.200	ENSSARG00000011902	-	100	99.200	Sorex_araneus
ENSCVAG00000005055	sf3b6	100	99.200	ENSSPUG00000014919	SF3B6	100	99.200	Sphenodon_punctatus
ENSCVAG00000005055	sf3b6	100	99.200	ENSSPAG00000013201	sf3b6	100	99.200	Stegastes_partitus
ENSCVAG00000005055	sf3b6	100	99.200	ENSSSCG00000008587	SF3B6	100	99.200	Sus_scrofa
ENSCVAG00000005055	sf3b6	100	99.200	ENSTGUG00000013191	SF3B6	100	99.200	Taeniopygia_guttata
ENSCVAG00000005055	sf3b6	100	99.200	ENSTRUG00000025286	sf3b6	100	99.200	Takifugu_rubripes
ENSCVAG00000005055	sf3b6	100	99.200	ENSTNIG00000009719	sf3b6	100	99.200	Tetraodon_nigroviridis
ENSCVAG00000005055	sf3b6	92	99.130	ENSTBEG00000012532	SF3B6	100	99.130	Tupaia_belangeri
ENSCVAG00000005055	sf3b6	92	99.130	ENSTTRG00000013430	SF3B6	100	99.130	Tursiops_truncatus
ENSCVAG00000005055	sf3b6	100	80.952	ENSUAMG00000000978	-	100	80.952	Ursus_americanus
ENSCVAG00000005055	sf3b6	100	99.200	ENSUAMG00000025329	SF3B6	100	99.200	Ursus_americanus
ENSCVAG00000005055	sf3b6	100	99.200	ENSUMAG00000022835	SF3B6	100	99.200	Ursus_maritimus
ENSCVAG00000005055	sf3b6	92	99.130	ENSVPAG00000005546	SF3B6	100	99.130	Vicugna_pacos
ENSCVAG00000005055	sf3b6	100	99.200	ENSVVUG00000010874	SF3B6	100	99.200	Vulpes_vulpes
ENSCVAG00000005055	sf3b6	100	98.400	ENSXETG00000018204	sf3b6	100	98.400	Xenopus_tropicalis
ENSCVAG00000005055	sf3b6	86	86.726	ENSXCOG00000008477	sf3b6	88	86.726	Xiphophorus_couchianus
ENSCVAG00000005055	sf3b6	100	99.200	ENSXMAG00000010747	sf3b6	100	99.200	Xiphophorus_maculatus