EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000005075 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 25894 bases
Position: chrKL653275.1:38497-64390
Accession: 107098409
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000022358	DEAD	PF00270.29	6.3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000009487	-	2484	XM_015396080	ENSCVAP00000022358	827 (aa)	XP_015251566	-

Gene Model

Click here to download ENSCVAG00000005075's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000005075's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000005075	hfm1	71	32.174	ENSCVAG00000013014	ascc3	52	32.174

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000005075	hfm1	86	69.101	ENSG00000162669	HFM1	50	69.101	Homo_sapiens
ENSCVAG00000005075	hfm1	86	84.529	ENSAPOG00000005304	hfm1	81	84.529	Acanthochromis_polyacanthus
ENSCVAG00000005075	hfm1	86	83.544	ENSACIG00000021553	hfm1	66	83.544	Amphilophus_citrinellus
ENSCVAG00000005075	hfm1	86	84.151	ENSAOCG00000022839	hfm1	86	84.151	Amphiprion_ocellaris
ENSCVAG00000005075	hfm1	86	84.388	ENSAPEG00000014316	hfm1	86	84.388	Amphiprion_percula
ENSCVAG00000005075	hfm1	86	83.404	ENSATEG00000019181	hfm1	62	83.404	Anabas_testudineus
ENSCVAG00000005075	hfm1	87	68.377	ENSAPLG00000013639	HFM1	50	68.377	Anas_platyrhynchos
ENSCVAG00000005075	hfm1	86	68.112	ENSANAG00000029513	HFM1	50	68.112	Aotus_nancymaae
ENSCVAG00000005075	hfm1	86	80.450	ENSACLG00000009033	hfm1	82	78.622	Astatotilapia_calliptera
ENSCVAG00000005075	hfm1	86	68.531	ENSCJAG00000001843	HFM1	50	68.531	Callithrix_jacchus
ENSCVAG00000005075	hfm1	87	68.194	ENSTSYG00000014250	HFM1	50	68.194	Carlito_syrichta
ENSCVAG00000005075	hfm1	86	68.303	ENSCPOG00000007421	HFM1	51	68.303	Cavia_porcellus
ENSCVAG00000005075	hfm1	86	68.112	ENSCCAG00000033206	HFM1	50	68.112	Cebus_capucinus
ENSCVAG00000005075	hfm1	86	69.371	ENSCATG00000030987	HFM1	50	69.371	Cercocebus_atys
ENSCVAG00000005075	hfm1	79	51.874	ENSCSAVG00000005094	-	92	51.874	Ciona_savignyi
ENSCVAG00000005075	hfm1	86	63.939	ENSCGRG00001016995	Hfm1	51	63.939	Cricetulus_griseus_chok1gshd
ENSCVAG00000005075	hfm1	86	66.573	ENSCGRG00000017181	Hfm1	50	66.573	Cricetulus_griseus_crigri
ENSCVAG00000005075	hfm1	86	79.606	ENSCSEG00000017659	hfm1	65	79.606	Cynoglossus_semilaevis
ENSCVAG00000005075	hfm1	86	72.433	ENSDARG00000104288	hfm1	64	72.433	Danio_rerio
ENSCVAG00000005075	hfm1	87	67.218	ENSDORG00000014661	Hfm1	50	67.218	Dipodomys_ordii
ENSCVAG00000005075	hfm1	86	68.864	ENSEASG00005015424	HFM1	71	68.864	Equus_asinus_asinus
ENSCVAG00000005075	hfm1	86	78.200	ENSELUG00000018944	hfm1	76	78.200	Esox_lucius
ENSCVAG00000005075	hfm1	86	68.487	ENSFALG00000001781	HFM1	50	68.487	Ficedula_albicollis
ENSCVAG00000005075	hfm1	86	73.034	ENSGMOG00000017436	hfm1	73	73.034	Gadus_morhua
ENSCVAG00000005075	hfm1	86	89.733	ENSGAFG00000018093	hfm1	80	86.376	Gambusia_affinis
ENSCVAG00000005075	hfm1	86	76.934	ENSGACG00000015686	hfm1	73	76.934	Gasterosteus_aculeatus
ENSCVAG00000005075	hfm1	86	69.004	ENSGGOG00000038524	HFM1	50	69.004	Gorilla_gorilla
ENSCVAG00000005075	hfm1	86	82.278	ENSHBUG00000007309	hfm1	68	82.278	Haplochromis_burtoni
ENSCVAG00000005075	hfm1	88	74.079	ENSHCOG00000019632	hfm1	87	74.079	Hippocampus_comes
ENSCVAG00000005075	hfm1	86	74.965	ENSIPUG00000017020	hfm1	77	72.254	Ictalurus_punctatus
ENSCVAG00000005075	hfm1	86	67.321	ENSJJAG00000017198	Hfm1	51	67.321	Jaculus_jaculus
ENSCVAG00000005075	hfm1	86	84.358	ENSKMAG00000002282	hfm1	73	84.358	Kryptolebias_marmoratus
ENSCVAG00000005075	hfm1	86	82.486	ENSLBEG00000006759	hfm1	81	78.451	Labrus_bergylta
ENSCVAG00000005075	hfm1	86	69.359	ENSLACG00000010698	HFM1	68	69.220	Latimeria_chalumnae
ENSCVAG00000005075	hfm1	86	75.596	ENSLOCG00000004931	hfm1	66	75.596	Lepisosteus_oculatus
ENSCVAG00000005075	hfm1	73	70.132	ENSLAFG00000015903	-	81	70.132	Loxodonta_africana
ENSCVAG00000005075	hfm1	86	65.084	ENSMFAG00000003649	HFM1	50	65.084	Macaca_fascicularis
ENSCVAG00000005075	hfm1	86	69.144	ENSMMUG00000006819	HFM1	50	69.144	Macaca_mulatta
ENSCVAG00000005075	hfm1	86	83.966	ENSMAMG00000004623	hfm1	81	83.966	Mastacembelus_armatus
ENSCVAG00000005075	hfm1	86	80.450	ENSMZEG00005004679	hfm1	82	78.622	Maylandia_zebra
ENSCVAG00000005075	hfm1	86	68.671	ENSMGAG00000008437	HFM1	89	68.671	Meleagris_gallopavo
ENSCVAG00000005075	hfm1	86	66.994	ENSMAUG00000018858	Hfm1	50	66.994	Mesocricetus_auratus
ENSCVAG00000005075	hfm1	86	68.811	ENSMICG00000037935	HFM1	50	68.811	Microcebus_murinus
ENSCVAG00000005075	hfm1	86	67.416	ENSMOCG00000014812	Hfm1	50	67.416	Microtus_ochrogaster
ENSCVAG00000005075	hfm1	86	82.278	ENSMMOG00000006148	hfm1	78	82.278	Mola_mola
ENSCVAG00000005075	hfm1	86	83.966	ENSMALG00000002401	hfm1	80	80.872	Monopterus_albus
ENSCVAG00000005075	hfm1	86	67.416	ENSMUSG00000043410	Hfm1	50	67.416	Mus_musculus
ENSCVAG00000005075	hfm1	86	67.416	MGP_PahariEiJ_G0017268	Hfm1	50	67.416	Mus_pahari
ENSCVAG00000005075	hfm1	86	67.697	MGP_SPRETEiJ_G0028495	Hfm1	50	67.697	Mus_spretus
ENSCVAG00000005075	hfm1	86	79.044	ENSNBRG00000002910	hfm1	84	79.044	Neolamprologus_brichardi
ENSCVAG00000005075	hfm1	86	66.713	ENSNLEG00000010285	HFM1	50	66.713	Nomascus_leucogenys
ENSCVAG00000005075	hfm1	86	61.290	ENSOPRG00000013916	HFM1	50	61.290	Ochotona_princeps
ENSCVAG00000005075	hfm1	86	83.544	ENSONIG00000010590	hfm1	68	83.544	Oreochromis_niloticus
ENSCVAG00000005075	hfm1	86	79.014	ENSORLG00000026844	hfm1	87	79.014	Oryzias_latipes
ENSCVAG00000005075	hfm1	86	71.449	ENSORLG00020002951	hfm1	55	71.449	Oryzias_latipes_hni
ENSCVAG00000005075	hfm1	86	68.811	ENSOGAG00000032369	HFM1	58	68.811	Otolemur_garnettii
ENSCVAG00000005075	hfm1	86	69.285	ENSOARG00000015812	HFM1	50	69.285	Ovis_aries
ENSCVAG00000005075	hfm1	86	69.382	ENSPPAG00000024582	HFM1	54	69.382	Pan_paniscus
ENSCVAG00000005075	hfm1	86	69.382	ENSPTRG00000000948	HFM1	50	69.382	Pan_troglodytes
ENSCVAG00000005075	hfm1	86	69.091	ENSPANG00000009838	HFM1	50	69.091	Papio_anubis
ENSCVAG00000005075	hfm1	86	74.402	ENSPKIG00000003810	hfm1	82	72.230	Paramormyrops_kingsleyae
ENSCVAG00000005075	hfm1	86	76.224	ENSPMGG00000011059	hfm1	87	76.224	Periophthalmus_magnuspinnatus
ENSCVAG00000005075	hfm1	86	66.994	ENSPEMG00000022852	Hfm1	50	66.994	Peromyscus_maniculatus_bairdii
ENSCVAG00000005075	hfm1	86	90.014	ENSPFOG00000017194	hfm1	68	90.014	Poecilia_formosa
ENSCVAG00000005075	hfm1	86	89.873	ENSPLAG00000000571	hfm1	65	89.873	Poecilia_latipinna
ENSCVAG00000005075	hfm1	86	90.155	ENSPMEG00000019475	hfm1	65	90.155	Poecilia_mexicana
ENSCVAG00000005075	hfm1	86	89.170	ENSPREG00000007803	hfm1	80	86.056	Poecilia_reticulata
ENSCVAG00000005075	hfm1	86	69.144	ENSPPYG00000001163	HFM1	50	69.144	Pongo_abelii
ENSCVAG00000005075	hfm1	86	60.589	ENSPVAG00000009713	HFM1	51	60.589	Pteropus_vampyrus
ENSCVAG00000005075	hfm1	86	80.169	ENSPNYG00000001795	hfm1	82	78.481	Pundamilia_nyererei
ENSCVAG00000005075	hfm1	86	73.840	ENSPNAG00000010865	hfm1	70	73.840	Pygocentrus_nattereri
ENSCVAG00000005075	hfm1	86	67.416	ENSRNOG00000023299	Hfm1	50	67.416	Rattus_norvegicus
ENSCVAG00000005075	hfm1	86	69.231	ENSRROG00000045569	HFM1	50	69.231	Rhinopithecus_roxellana
ENSCVAG00000005075	hfm1	86	68.303	ENSSBOG00000027456	HFM1	51	68.303	Saimiri_boliviensis_boliviensis
ENSCVAG00000005075	hfm1	65	71.402	ENSSHAG00000014616	-	61	71.402	Sarcophilus_harrisii
ENSCVAG00000005075	hfm1	86	81.818	ENSSMAG00000006907	hfm1	70	81.818	Scophthalmus_maximus
ENSCVAG00000005075	hfm1	86	82.254	ENSSDUG00000011424	hfm1	80	82.254	Seriola_dumerili
ENSCVAG00000005075	hfm1	86	82.419	ENSSLDG00000016386	hfm1	79	82.419	Seriola_lalandi_dorsalis
ENSCVAG00000005075	hfm1	86	81.549	ENSSPAG00000001023	hfm1	80	81.549	Stegastes_partitus
ENSCVAG00000005075	hfm1	86	69.705	ENSSSCG00000006912	HFM1	52	69.705	Sus_scrofa
ENSCVAG00000005075	hfm1	86	68.207	ENSTGUG00000006172	HFM1	75	68.207	Taeniopygia_guttata
ENSCVAG00000005075	hfm1	86	68.399	ENSTTRG00000013933	HFM1	50	68.399	Tursiops_truncatus
ENSCVAG00000005075	hfm1	86	66.199	ENSVPAG00000011331	HFM1	50	66.199	Vicugna_pacos
ENSCVAG00000005075	hfm1	86	68.820	ENSVVUG00000020760	HFM1	71	68.820	Vulpes_vulpes
ENSCVAG00000005075	hfm1	86	87.324	ENSXMAG00000004178	hfm1	79	87.324	Xiphophorus_maculatus