EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000005156 (Gene tree)
Gene ID: 107087766
Gene Symbol: polr2a
Alias: im:7136071
Full Name: RNA polymerase II subunit A
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 14663 bases
Position: chrKL652693.1:979247-993909
Accession: 107087766
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000003901	RNA_pol_Rpb1_5	PF04998.17	2.9e-101	1	1
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	1	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	2	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	3	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	4	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	5	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	6	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	7	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	8	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	9	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	10	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	11	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	12	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	13	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	14	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	15	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	16	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	17	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	18	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	19	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	20	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	21	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	22	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	23	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	24	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	25	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	26	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	27	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	28	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	29	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	30	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	31	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	32	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	33	34
ENSCVAP00000003901	RNA_pol_Rpb1_R	PF05001.13	3.4e-25	34	34
ENSCVAP00000003901	RNA_pol_Rpb1_4	PF05000.17	1.3e-37	1	1
ENSCVAP00000003901	RNA_pol_Rpb1_2	PF00623.20	5.9e-75	1	1
ENSCVAP00000003901	RNA_pol_Rpb1_3	PF04983.18	2.9e-50	1	1
ENSCVAP00000003901	RNA_pol_Rpb1_1	PF04997.12	7.1e-109	1	1
ENSCVAP00000003901	RNA_pol_Rpb1_7	PF04990.12	6.3e-55	1	1
ENSCVAP00000003901	RNA_pol_Rpb1_6	PF04992.14	3.2e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000009254	-	8176	XM_015379502	ENSCVAP00000003901	1966 (aa)	XP_015234988	UPI00074262AC

Gene Model

Click here to download ENSCVAG00000005156's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000005156's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000005156	polr2a	60	31.068	ENSCVAG00000020941	polr1a	74	31.440
ENSCVAG00000005156	polr2a	66	37.569	ENSCVAG00000023049	polr3a	91	37.569

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000005156	polr2a	87	98.511	ENSAPOG00000006552	polr2a	90	98.511	Acanthochromis_polyacanthus
ENSCVAG00000005156	polr2a	82	94.300	ENSAMEG00000016265	-	82	94.307	Ailuropoda_melanoleuca
ENSCVAG00000005156	polr2a	100	96.389	ENSACIG00000015982	polr2a	100	96.897	Amphilophus_citrinellus
ENSCVAG00000005156	polr2a	95	96.278	ENSAOCG00000004255	polr2a	93	96.278	Amphiprion_ocellaris
ENSCVAG00000005156	polr2a	100	98.881	ENSAPEG00000012623	polr2a	100	98.881	Amphiprion_percula
ENSCVAG00000005156	polr2a	100	98.423	ENSATEG00000019644	polr2a	100	98.423	Anabas_testudineus
ENSCVAG00000005156	polr2a	82	94.783	ENSACAG00000014561	POLR2A	82	94.789	Anolis_carolinensis
ENSCVAG00000005156	polr2a	82	94.662	ENSANAG00000020093	-	82	94.668	Aotus_nancymaae
ENSCVAG00000005156	polr2a	100	98.271	ENSACLG00000006735	polr2a	100	98.271	Astatotilapia_calliptera
ENSCVAG00000005156	polr2a	100	97.965	ENSAMXG00000020046	polr2a	100	97.965	Astyanax_mexicanus
ENSCVAG00000005156	polr2a	82	94.662	ENSBTAG00000046765	POLR2A	82	94.668	Bos_taurus
ENSCVAG00000005156	polr2a	98	71.429	WBGene00000123	ama-1	99	79.612	Caenorhabditis_elegans
ENSCVAG00000005156	polr2a	86	94.600	ENSCAFG00000016532	POLR2A	99	94.606	Canis_familiaris
ENSCVAG00000005156	polr2a	82	93.734	ENSCAFG00020007929	-	82	93.742	Canis_lupus_dingo
ENSCVAG00000005156	polr2a	82	94.662	ENSCHIG00000027173	-	82	94.668	Capra_hircus
ENSCVAG00000005156	polr2a	90	93.992	ENSTSYG00000012803	-	85	91.955	Carlito_syrichta
ENSCVAG00000005156	polr2a	98	91.106	ENSCAPG00000001882	-	100	93.679	Cavia_aperea
ENSCVAG00000005156	polr2a	99	88.986	ENSCPOG00000014812	-	100	93.490	Cavia_porcellus
ENSCVAG00000005156	polr2a	82	94.662	ENSCCAG00000020938	-	82	94.668	Cebus_capucinus
ENSCVAG00000005156	polr2a	82	94.662	ENSCATG00000013680	-	82	94.668	Cercocebus_atys
ENSCVAG00000005156	polr2a	82	94.538	ENSCLAG00000012196	-	82	94.544	Chinchilla_lanigera
ENSCVAG00000005156	polr2a	82	85.873	ENSCSAG00000011644	-	82	85.890	Chlorocebus_sabaeus
ENSCVAG00000005156	polr2a	91	82.927	ENSCPBG00000012697	POLR2A	99	83.711	Chrysemys_picta_bellii
ENSCVAG00000005156	polr2a	98	76.549	ENSCING00000007884	-	99	77.104	Ciona_intestinalis
ENSCVAG00000005156	polr2a	98	79.630	ENSCSAVG00000008334	-	99	81.731	Ciona_savignyi
ENSCVAG00000005156	polr2a	82	93.979	ENSCANG00000010622	-	82	93.986	Colobus_angolensis_palliatus
ENSCVAG00000005156	polr2a	82	88.322	ENSCGRG00001003538	Polr2a	85	87.225	Cricetulus_griseus_chok1gshd
ENSCVAG00000005156	polr2a	82	90.965	ENSCGRG00000012105	Polr2a	93	90.748	Cricetulus_griseus_crigri
ENSCVAG00000005156	polr2a	99	97.557	ENSCSEG00000002635	polr2a	100	97.557	Cynoglossus_semilaevis
ENSCVAG00000005156	polr2a	100	97.458	ENSDARG00000099966	polr2a	100	97.458	Danio_rerio
ENSCVAG00000005156	polr2a	82	91.744	ENSDNOG00000016482	-	82	91.754	Dasypus_novemcinctus
ENSCVAG00000005156	polr2a	82	94.662	ENSDORG00000008667	Polr2a	82	94.668	Dipodomys_ordii
ENSCVAG00000005156	polr2a	99	70.095	FBgn0003277	RpII215	98	75.217	Drosophila_melanogaster
ENSCVAG00000005156	polr2a	94	90.569	ENSETEG00000002540	-	87	91.695	Echinops_telfairi
ENSCVAG00000005156	polr2a	82	87.336	ENSEBUG00000013967	polr2a	82	87.321	Eptatretus_burgeri
ENSCVAG00000005156	polr2a	82	92.613	ENSEASG00005019114	-	83	92.622	Equus_asinus_asinus
ENSCVAG00000005156	polr2a	82	94.662	ENSECAG00000018485	POLR2A	82	94.668	Equus_caballus
ENSCVAG00000005156	polr2a	83	94.526	ENSEEUG00000001154	-	95	94.526	Erinaceus_europaeus
ENSCVAG00000005156	polr2a	89	92.478	ENSELUG00000014284	polr2a	84	93.157	Esox_lucius
ENSCVAG00000005156	polr2a	82	94.600	ENSFDAG00000008287	-	82	94.606	Fukomys_damarensis
ENSCVAG00000005156	polr2a	99	99.426	ENSFHEG00000001768	polr2a	100	99.426	Fundulus_heteroclitus
ENSCVAG00000005156	polr2a	99	93.193	ENSGMOG00000007725	polr2a	100	93.220	Gadus_morhua
ENSCVAG00000005156	polr2a	99	100.000	ENSGAFG00000005389	polr2a	100	95.774	Gambusia_affinis
ENSCVAG00000005156	polr2a	99	93.954	ENSGACG00000019366	polr2a	100	93.731	Gasterosteus_aculeatus
ENSCVAG00000005156	polr2a	82	92.570	ENSGGOG00000014800	-	96	93.198	Gorilla_gorilla
ENSCVAG00000005156	polr2a	99	98.216	ENSHBUG00000018937	polr2a	100	98.216	Haplochromis_burtoni
ENSCVAG00000005156	polr2a	82	94.600	ENSHGLG00000012381	POLR2A	82	94.606	Heterocephalus_glaber_female
ENSCVAG00000005156	polr2a	82	94.600	ENSHGLG00100014843	POLR2A	82	94.606	Heterocephalus_glaber_male
ENSCVAG00000005156	polr2a	100	97.915	ENSHCOG00000011874	polr2a	100	97.915	Hippocampus_comes
ENSCVAG00000005156	polr2a	100	97.406	ENSIPUG00000002613	Polr2a	100	97.406	Ictalurus_punctatus
ENSCVAG00000005156	polr2a	82	94.662	ENSSTOG00000001304	-	82	94.668	Ictidomys_tridecemlineatus
ENSCVAG00000005156	polr2a	82	94.662	ENSJJAG00000013049	Polr2a	82	94.668	Jaculus_jaculus
ENSCVAG00000005156	polr2a	82	100.000	ENSKMAG00000016343	polr2a	86	100.000	Kryptolebias_marmoratus
ENSCVAG00000005156	polr2a	99	98.422	ENSLBEG00000027652	polr2a	100	98.422	Labrus_bergylta
ENSCVAG00000005156	polr2a	80	85.326	ENSLACG00000012071	POLR2A	81	85.398	Latimeria_chalumnae
ENSCVAG00000005156	polr2a	89	97.290	ENSLOCG00000013863	polr2a	97	96.834	Lepisosteus_oculatus
ENSCVAG00000005156	polr2a	99	91.378	ENSLAFG00000008626	-	97	94.668	Loxodonta_africana
ENSCVAG00000005156	polr2a	50	93.463	ENSMFAG00000007042	-	99	93.463	Macaca_fascicularis
ENSCVAG00000005156	polr2a	82	94.662	ENSMMUG00000023620	-	91	94.668	Macaca_mulatta
ENSCVAG00000005156	polr2a	82	94.227	ENSMNEG00000040407	-	82	94.234	Macaca_nemestrina
ENSCVAG00000005156	polr2a	80	90.190	ENSMLEG00000030263	-	99	93.463	Mandrillus_leucophaeus
ENSCVAG00000005156	polr2a	100	98.474	ENSMAMG00000003351	polr2a	100	98.474	Mastacembelus_armatus
ENSCVAG00000005156	polr2a	100	98.271	ENSMZEG00005021429	polr2a	100	98.271	Maylandia_zebra
ENSCVAG00000005156	polr2a	50	94.292	ENSMAUG00000021055	-	99	94.292	Mesocricetus_auratus
ENSCVAG00000005156	polr2a	82	94.600	ENSMICG00000013372	-	98	93.859	Microcebus_murinus
ENSCVAG00000005156	polr2a	99	90.087	ENSMOCG00000018279	Polr2a	100	90.297	Microtus_ochrogaster
ENSCVAG00000005156	polr2a	90	97.519	ENSMMOG00000012515	polr2a	92	97.519	Mola_mola
ENSCVAG00000005156	polr2a	82	94.413	ENSMODG00000007009	-	82	94.420	Monodelphis_domestica
ENSCVAG00000005156	polr2a	93	95.105	ENSMALG00000008716	polr2a	99	95.720	Monopterus_albus
ENSCVAG00000005156	polr2a	82	94.662	MGP_CAROLIEiJ_G0016587	Polr2a	82	94.668	Mus_caroli
ENSCVAG00000005156	polr2a	82	94.662	ENSMUSG00000005198	Polr2a	82	94.668	Mus_musculus
ENSCVAG00000005156	polr2a	82	92.522	MGP_PahariEiJ_G0017718	Polr2a	82	92.531	Mus_pahari
ENSCVAG00000005156	polr2a	82	94.662	MGP_SPRETEiJ_G0017423	Polr2a	82	94.668	Mus_spretus
ENSCVAG00000005156	polr2a	82	94.538	ENSMPUG00000009648	-	82	94.544	Mustela_putorius_furo
ENSCVAG00000005156	polr2a	82	94.048	ENSMLUG00000009088	-	82	94.056	Myotis_lucifugus
ENSCVAG00000005156	polr2a	82	94.662	ENSNGAG00000002543	Polr2a	82	94.668	Nannospalax_galili
ENSCVAG00000005156	polr2a	100	96.033	ENSNBRG00000002005	polr2a	100	96.490	Neolamprologus_brichardi
ENSCVAG00000005156	polr2a	82	93.189	ENSNLEG00000009460	-	82	93.197	Nomascus_leucogenys
ENSCVAG00000005156	polr2a	94	95.316	ENSMEUG00000008611	-	93	95.316	Notamacropus_eugenii
ENSCVAG00000005156	polr2a	80	94.378	ENSOPRG00000015116	-	99	94.378	Ochotona_princeps
ENSCVAG00000005156	polr2a	87	94.522	ENSODEG00000017674	-	85	90.136	Octodon_degus
ENSCVAG00000005156	polr2a	100	98.525	ENSONIG00000009231	polr2a	100	98.525	Oreochromis_niloticus
ENSCVAG00000005156	polr2a	99	90.575	ENSOCUG00000017929	-	100	94.544	Oryctolagus_cuniculus
ENSCVAG00000005156	polr2a	100	98.678	ENSORLG00000006431	polr2a	100	98.678	Oryzias_latipes
ENSCVAG00000005156	polr2a	100	98.678	ENSORLG00020010235	polr2a	100	98.678	Oryzias_latipes_hni
ENSCVAG00000005156	polr2a	100	98.576	ENSORLG00015007075	polr2a	100	98.576	Oryzias_latipes_hsok
ENSCVAG00000005156	polr2a	92	98.320	ENSOMEG00000010713	polr2a	100	98.320	Oryzias_melastigma
ENSCVAG00000005156	polr2a	82	94.662	ENSOGAG00000033608	-	82	94.668	Otolemur_garnettii
ENSCVAG00000005156	polr2a	91	94.662	ENSOARG00000013874	-	100	94.668	Ovis_aries
ENSCVAG00000005156	polr2a	82	92.742	ENSPPAG00000043734	-	83	92.213	Pan_paniscus
ENSCVAG00000005156	polr2a	82	93.189	ENSPTRG00000008691	POLR2A	82	93.197	Pan_troglodytes
ENSCVAG00000005156	polr2a	82	93.979	ENSPANG00000024099	-	82	93.986	Papio_anubis
ENSCVAG00000005156	polr2a	77	95.721	ENSPKIG00000005727	polr2a	85	95.471	Paramormyrops_kingsleyae
ENSCVAG00000005156	polr2a	98	92.831	ENSPSIG00000014006	POLR2A	100	92.751	Pelodiscus_sinensis
ENSCVAG00000005156	polr2a	100	97.567	ENSPMGG00000019734	polr2a	100	97.567	Periophthalmus_magnuspinnatus
ENSCVAG00000005156	polr2a	82	94.662	ENSPEMG00000012521	Polr2a	82	94.668	Peromyscus_maniculatus_bairdii
ENSCVAG00000005156	polr2a	86	94.417	ENSPCIG00000028851	-	82	94.417	Phascolarctos_cinereus
ENSCVAG00000005156	polr2a	99	99.736	ENSPFOG00000007890	polr2a	99	99.736	Poecilia_formosa
ENSCVAG00000005156	polr2a	99	99.736	ENSPLAG00000007399	polr2a	99	99.736	Poecilia_latipinna
ENSCVAG00000005156	polr2a	99	99.736	ENSPMEG00000002071	polr2a	99	99.736	Poecilia_mexicana
ENSCVAG00000005156	polr2a	100	99.695	ENSPREG00000013122	polr2a	100	99.695	Poecilia_reticulata
ENSCVAG00000005156	polr2a	82	94.662	ENSPPYG00000007924	-	82	94.668	Pongo_abelii
ENSCVAG00000005156	polr2a	74	94.868	ENSPCAG00000006951	-	74	94.868	Procavia_capensis
ENSCVAG00000005156	polr2a	82	93.358	ENSPCOG00000025260	-	82	93.366	Propithecus_coquereli
ENSCVAG00000005156	polr2a	82	94.351	ENSPVAG00000005069	-	82	94.358	Pteropus_vampyrus
ENSCVAG00000005156	polr2a	100	98.321	ENSPNYG00000022340	polr2a	100	98.321	Pundamilia_nyererei
ENSCVAG00000005156	polr2a	100	98.118	ENSPNAG00000011237	polr2a	100	98.118	Pygocentrus_nattereri
ENSCVAG00000005156	polr2a	82	94.600	ENSRNOG00000028834	Polr2a	82	94.606	Rattus_norvegicus
ENSCVAG00000005156	polr2a	82	94.289	ENSRBIG00000002471	-	91	94.296	Rhinopithecus_bieti
ENSCVAG00000005156	polr2a	82	94.662	ENSRROG00000029583	-	89	93.800	Rhinopithecus_roxellana
ENSCVAG00000005156	polr2a	83	49.726	YDL140C	RPO21	99	83.544	Saccharomyces_cerevisiae
ENSCVAG00000005156	polr2a	82	94.662	ENSSBOG00000000808	-	82	94.668	Saimiri_boliviensis_boliviensis
ENSCVAG00000005156	polr2a	93	94.413	ENSSHAG00000002858	-	84	94.420	Sarcophilus_harrisii
ENSCVAG00000005156	polr2a	99	97.612	ENSSFOG00015023275	polr2a	100	97.612	Scleropages_formosus
ENSCVAG00000005156	polr2a	82	97.643	ENSSMAG00000009137	polr2a	82	97.643	Scophthalmus_maximus
ENSCVAG00000005156	polr2a	100	98.678	ENSSDUG00000020466	polr2a	100	98.678	Seriola_dumerili
ENSCVAG00000005156	polr2a	100	98.627	ENSSLDG00000020613	polr2a	100	98.627	Seriola_lalandi_dorsalis
ENSCVAG00000005156	polr2a	95	90.251	ENSSARG00000005875	-	99	91.078	Sorex_araneus
ENSCVAG00000005156	polr2a	100	100.000	ENSSPAG00000016741	polr2a	95	100.000	Stegastes_partitus
ENSCVAG00000005156	polr2a	82	93.731	ENSSSCG00000028278	-	82	93.738	Sus_scrofa
ENSCVAG00000005156	polr2a	98	92.312	ENSTRUG00000012320	polr2a	81	92.312	Takifugu_rubripes
ENSCVAG00000005156	polr2a	95	96.650	ENSTNIG00000010136	polr2a	100	96.650	Tetraodon_nigroviridis
ENSCVAG00000005156	polr2a	74	94.898	ENSTBEG00000013294	-	58	94.898	Tupaia_belangeri
ENSCVAG00000005156	polr2a	82	92.986	ENSTTRG00000014273	-	82	92.994	Tursiops_truncatus
ENSCVAG00000005156	polr2a	92	94.241	ENSUAMG00000014866	-	100	91.713	Ursus_americanus
ENSCVAG00000005156	polr2a	74	92.146	ENSUMAG00000015732	-	83	89.944	Ursus_maritimus
ENSCVAG00000005156	polr2a	65	98.370	ENSVPAG00000008842	-	76	98.370	Vicugna_pacos
ENSCVAG00000005156	polr2a	82	94.600	ENSVVUG00000027878	-	83	94.606	Vulpes_vulpes
ENSCVAG00000005156	polr2a	81	94.084	ENSXETG00000012465	polr2a	82	94.092	Xenopus_tropicalis
ENSCVAG00000005156	polr2a	96	96.196	ENSXCOG00000001804	polr2a	100	96.748	Xiphophorus_couchianus
ENSCVAG00000005156	polr2a	100	99.644	ENSXMAG00000015687	polr2a	100	99.644	Xiphophorus_maculatus