EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000005262 (Gene tree)
Gene ID: 107092722
Gene Symbol: -
Alias: zgc:109966
Full Name: poly(rC)-binding protein 3
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 36561 bases
Position: chrKL652891.1:604506-641066
Accession: 107092722
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000022488	KH_1	PF00013.29	1.4e-54	1	3
ENSCVAP00000022488	KH_1	PF00013.29	1.4e-54	2	3
ENSCVAP00000022488	KH_1	PF00013.29	1.4e-54	3	3
ENSCVAP00000003932	KH_1	PF00013.29	1.5e-54	1	3
ENSCVAP00000003932	KH_1	PF00013.29	1.5e-54	2	3
ENSCVAP00000003932	KH_1	PF00013.29	1.5e-54	3	3
ENSCVAP00000022470	KH_1	PF00013.29	1.7e-48	1	3
ENSCVAP00000022470	KH_1	PF00013.29	1.7e-48	2	3
ENSCVAP00000022470	KH_1	PF00013.29	1.7e-48	3	3
ENSCVAP00000022488	KH_2	PF07650.17	2.9e-14	1	1
ENSCVAP00000003932	KH_2	PF07650.17	3.7e-14	1	1
ENSCVAP00000022470	KH_2	PF07650.17	3.9e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000009197	-	1552	XM_015387346	ENSCVAP00000003932	327 (aa)	XP_015242832	UPI000742567A
ENSCVAT00000009184	-	2506	XM_015387349	ENSCVAP00000022488	321 (aa)	XP_015242835	UPI0007426133
ENSCVAT00000009224	-	960	-	ENSCVAP00000022470	319 (aa)	-	-

Gene Model

Click here to download ENSCVAG00000005262's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000005262's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000005262	-	93	30.657	ENSCVAG00000018051	igf2bp1	53	30.657
ENSCVAG00000005262	-	80	73.846	ENSCVAG00000004726	zgc:110045	89	73.846
ENSCVAG00000005262	-	66	41.667	ENSCVAG00000014025	NOVA1	58	41.667
ENSCVAG00000005262	-	99	78.683	ENSCVAG00000015775	pcbp2	99	78.683
ENSCVAG00000005262	-	88	39.437	ENSCVAG00000014373	-	58	39.437
ENSCVAG00000005262	-	97	79.677	ENSCVAG00000009913	PCBP2	97	79.677
ENSCVAG00000005262	-	89	38.462	ENSCVAG00000017181	FUBP3	68	38.462
ENSCVAG00000005262	-	79	50.685	ENSCVAG00000023173	hnrpkl	53	50.685
ENSCVAG00000005262	-	71	39.437	ENSCVAG00000001873	khsrp	52	39.437
ENSCVAG00000005262	-	92	62.030	ENSCVAG00000003674	pcbp4	73	62.030
ENSCVAG00000005262	-	64	52.703	ENSCVAG00000006278	hnrnpk	56	52.703
ENSCVAG00000005262	-	97	34.507	ENSCVAG00000008891	igf2bp3	65	34.507
ENSCVAG00000005262	-	88	40.845	ENSCVAG00000011460	nova1	51	40.845
ENSCVAG00000005262	-	68	40.000	ENSCVAG00000014487	fubp1	52	41.538
ENSCVAG00000005262	-	100	90.057	ENSCVAG00000014482	pcbp3	100	90.057
ENSCVAG00000005262	-	98	58.217	ENSCVAG00000013090	-	78	58.217
ENSCVAG00000005262	-	93	34.532	ENSCVAG00000004656	igf2bp2b	64	34.375

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000005262	-	100	99.083	ENSAPOG00000016582	-	100	99.083	Acanthochromis_polyacanthus
ENSCVAG00000005262	-	99	93.354	ENSAPOG00000020003	pcbp3	89	93.354	Acanthochromis_polyacanthus
ENSCVAG00000005262	-	99	91.395	ENSAMEG00000001697	-	99	87.216	Ailuropoda_melanoleuca
ENSCVAG00000005262	-	100	95.092	ENSACIG00000002739	-	100	95.092	Amphilophus_citrinellus
ENSCVAG00000005262	-	100	88.000	ENSACIG00000010933	pcbp3	100	88.000	Amphilophus_citrinellus
ENSCVAG00000005262	-	88	94.881	ENSAOCG00000007806	-	100	94.881	Amphiprion_ocellaris
ENSCVAG00000005262	-	97	97.097	ENSAOCG00000008592	-	100	95.268	Amphiprion_ocellaris
ENSCVAG00000005262	-	100	97.492	ENSAPEG00000005209	-	100	97.492	Amphiprion_percula
ENSCVAG00000005262	-	100	90.341	ENSAPEG00000008011	pcbp3	100	90.341	Amphiprion_percula
ENSCVAG00000005262	-	97	88.520	ENSATEG00000015787	-	100	88.520	Anabas_testudineus
ENSCVAG00000005262	-	100	97.492	ENSATEG00000009833	-	100	97.492	Anabas_testudineus
ENSCVAG00000005262	-	98	75.204	ENSAPLG00000008951	-	82	75.204	Anas_platyrhynchos
ENSCVAG00000005262	-	99	92.771	ENSAPLG00000002975	-	99	92.771	Anas_platyrhynchos
ENSCVAG00000005262	-	99	82.799	ENSACAG00000009819	-	99	82.799	Anolis_carolinensis
ENSCVAG00000005262	-	99	85.596	ENSACAG00000004607	-	99	85.596	Anolis_carolinensis
ENSCVAG00000005262	-	95	97.059	ENSANAG00000030702	-	100	97.059	Aotus_nancymaae
ENSCVAG00000005262	-	100	89.489	ENSACLG00000011835	pcbp3	100	89.489	Astatotilapia_calliptera
ENSCVAG00000005262	-	100	98.471	ENSACLG00000003801	-	100	98.471	Astatotilapia_calliptera
ENSCVAG00000005262	-	95	69.207	ENSAMXG00000001760	zgc:110045	72	69.207	Astyanax_mexicanus
ENSCVAG00000005262	-	100	92.000	ENSAMXG00000003440	pcbp3	100	92.000	Astyanax_mexicanus
ENSCVAG00000005262	-	97	92.532	ENSAMXG00000013588	-	100	92.532	Astyanax_mexicanus
ENSCVAG00000005262	-	92	96.567	ENSCAFG00020019472	-	83	96.567	Canis_lupus_dingo
ENSCVAG00000005262	-	99	97.170	ENSCSAG00000007440	-	90	97.170	Chlorocebus_sabaeus
ENSCVAG00000005262	-	96	97.403	ENSCPBG00000012151	-	99	91.420	Chrysemys_picta_bellii
ENSCVAG00000005262	-	97	82.583	ENSCPBG00000000733	-	77	78.977	Chrysemys_picta_bellii
ENSCVAG00000005262	-	100	79.130	ENSCSEG00000016984	-	100	79.130	Cynoglossus_semilaevis
ENSCVAG00000005262	-	97	93.831	ENSCSEG00000000822	pcbp3	99	93.831	Cynoglossus_semilaevis
ENSCVAG00000005262	-	100	92.571	ENSDARG00000054378	pcbp3	100	92.571	Danio_rerio
ENSCVAG00000005262	-	99	83.648	ENSETEG00000015988	-	99	83.648	Echinops_telfairi
ENSCVAG00000005262	-	92	70.850	ENSEBUG00000005495	pcbp3	74	70.850	Eptatretus_burgeri
ENSCVAG00000005262	-	87	73.571	ENSEBUG00000016192	pcbp3	99	73.978	Eptatretus_burgeri
ENSCVAG00000005262	-	98	81.073	ENSEBUG00000007485	-	94	80.176	Eptatretus_burgeri
ENSCVAG00000005262	-	100	98.165	ENSELUG00000001560	-	91	98.165	Esox_lucius
ENSCVAG00000005262	-	100	90.368	ENSELUG00000003521	pcbp3	100	90.368	Esox_lucius
ENSCVAG00000005262	-	98	75.477	ENSFALG00000004411	-	77	75.477	Ficedula_albicollis
ENSCVAG00000005262	-	99	96.226	ENSFALG00000003949	-	99	96.226	Ficedula_albicollis
ENSCVAG00000005262	-	100	99.373	ENSFHEG00000006539	-	100	99.373	Fundulus_heteroclitus
ENSCVAG00000005262	-	98	93.930	ENSFHEG00000016615	pcbp3	96	94.534	Fundulus_heteroclitus
ENSCVAG00000005262	-	97	80.597	ENSGMOG00000011992	pcbp3	97	80.597	Gadus_morhua
ENSCVAG00000005262	-	96	71.212	ENSGMOG00000008611	-	99	71.212	Gadus_morhua
ENSCVAG00000005262	-	99	83.565	ENSGALG00000004394	-	98	89.130	Gallus_gallus
ENSCVAG00000005262	-	98	81.871	ENSGALG00000013155	-	99	80.723	Gallus_gallus
ENSCVAG00000005262	-	100	84.795	ENSGAFG00000011430	pcbp3	99	84.795	Gambusia_affinis
ENSCVAG00000005262	-	100	99.083	ENSGAFG00000010274	-	100	99.083	Gambusia_affinis
ENSCVAG00000005262	-	100	79.396	ENSGACG00000014955	-	100	79.396	Gasterosteus_aculeatus
ENSCVAG00000005262	-	100	91.520	ENSGACG00000002266	-	100	91.520	Gasterosteus_aculeatus
ENSCVAG00000005262	-	94	89.139	ENSGAGG00000000271	-	100	89.139	Gopherus_agassizii
ENSCVAG00000005262	-	79	89.062	ENSGAGG00000006956	-	78	89.062	Gopherus_agassizii
ENSCVAG00000005262	-	97	94.194	ENSHBUG00000010697	pcbp3	98	94.194	Haplochromis_burtoni
ENSCVAG00000005262	-	100	98.471	ENSHBUG00000021782	-	100	98.471	Haplochromis_burtoni
ENSCVAG00000005262	-	100	90.313	ENSHCOG00000017868	pcbp3	100	90.313	Hippocampus_comes
ENSCVAG00000005262	-	100	93.458	ENSHCOG00000006067	-	100	93.458	Hippocampus_comes
ENSCVAG00000005262	-	100	96.552	ENSIPUG00000006238	pcbp3	100	96.552	Ictalurus_punctatus
ENSCVAG00000005262	-	100	90.341	ENSKMAG00000003046	pcbp3	100	90.341	Kryptolebias_marmoratus
ENSCVAG00000005262	-	100	97.859	ENSKMAG00000018530	-	100	97.859	Kryptolebias_marmoratus
ENSCVAG00000005262	-	100	83.025	ENSLBEG00000006542	-	100	83.025	Labrus_bergylta
ENSCVAG00000005262	-	99	93.354	ENSLBEG00000006201	pcbp3	98	93.354	Labrus_bergylta
ENSCVAG00000005262	-	97	76.901	ENSLACG00000010804	zgc:110045	78	74.595	Latimeria_chalumnae
ENSCVAG00000005262	-	96	83.616	ENSLACG00000010386	pcbp3	77	80.926	Latimeria_chalumnae
ENSCVAG00000005262	-	99	91.716	ENSLOCG00000009369	pcbp3	99	91.716	Lepisosteus_oculatus
ENSCVAG00000005262	-	95	82.875	ENSLOCG00000005058	zgc:110045	80	83.180	Lepisosteus_oculatus
ENSCVAG00000005262	-	97	94.212	ENSMAMG00000022336	pcbp3	94	94.212	Mastacembelus_armatus
ENSCVAG00000005262	-	100	96.238	ENSMAMG00000011620	-	100	96.238	Mastacembelus_armatus
ENSCVAG00000005262	-	100	88.757	ENSMZEG00005014882	-	100	89.349	Maylandia_zebra
ENSCVAG00000005262	-	100	87.714	ENSMZEG00005008993	pcbp3	100	87.714	Maylandia_zebra
ENSCVAG00000005262	-	97	77.374	ENSMGAG00000006794	-	78	75.067	Meleagris_gallopavo
ENSCVAG00000005262	-	96	81.089	ENSMGAG00000001883	-	97	81.197	Meleagris_gallopavo
ENSCVAG00000005262	-	97	93.269	ENSMMOG00000000730	pcbp3	88	93.269	Mola_mola
ENSCVAG00000005262	-	100	96.238	ENSMMOG00000005216	-	100	96.238	Mola_mola
ENSCVAG00000005262	-	71	78.037	ENSMODG00000027884	-	93	78.037	Monodelphis_domestica
ENSCVAG00000005262	-	100	88.034	ENSMALG00000000691	pcbp3	100	88.034	Monopterus_albus
ENSCVAG00000005262	-	99	86.310	ENSMPUG00000001779	-	91	86.310	Mustela_putorius_furo
ENSCVAG00000005262	-	100	89.349	ENSNBRG00000016714	-	100	89.349	Neolamprologus_brichardi
ENSCVAG00000005262	-	100	87.714	ENSNBRG00000016409	-	100	87.714	Neolamprologus_brichardi
ENSCVAG00000005262	-	94	82.799	ENSOPRG00000003431	-	99	82.799	Ochotona_princeps
ENSCVAG00000005262	-	100	98.442	ENSONIG00000004611	-	100	98.442	Oreochromis_niloticus
ENSCVAG00000005262	-	97	84.703	ENSONIG00000012122	-	98	84.703	Oreochromis_niloticus
ENSCVAG00000005262	-	99	96.226	ENSOCUG00000002696	-	90	96.226	Oryctolagus_cuniculus
ENSCVAG00000005262	-	100	98.754	ENSORLG00000022739	-	100	98.754	Oryzias_latipes
ENSCVAG00000005262	-	97	97.097	ENSORLG00000000059	pcbp3	100	97.097	Oryzias_latipes
ENSCVAG00000005262	-	100	98.442	ENSORLG00020006124	-	100	98.442	Oryzias_latipes_hni
ENSCVAG00000005262	-	99	95.611	ENSORLG00020012671	pcbp3	99	95.611	Oryzias_latipes_hni
ENSCVAG00000005262	-	99	98.160	ENSORLG00015008051	-	99	98.160	Oryzias_latipes_hsok
ENSCVAG00000005262	-	99	95.611	ENSORLG00015000429	pcbp3	99	95.611	Oryzias_latipes_hsok
ENSCVAG00000005262	-	100	98.131	ENSOMEG00000020162	-	100	98.131	Oryzias_melastigma
ENSCVAG00000005262	-	90	95.139	ENSOMEG00000020811	pcbp3	99	95.139	Oryzias_melastigma
ENSCVAG00000005262	-	99	83.791	ENSOGAG00000008044	-	99	83.791	Otolemur_garnettii
ENSCVAG00000005262	-	78	84.574	ENSPKIG00000020913	-	82	84.574	Paramormyrops_kingsleyae
ENSCVAG00000005262	-	100	97.248	ENSPKIG00000019329	pcbp3	100	97.248	Paramormyrops_kingsleyae
ENSCVAG00000005262	-	96	81.301	ENSPSIG00000008350	-	72	77.778	Pelodiscus_sinensis
ENSCVAG00000005262	-	99	83.333	ENSPSIG00000014970	-	99	83.929	Pelodiscus_sinensis
ENSCVAG00000005262	-	100	90.286	ENSPMGG00000022383	pcbp3	100	90.286	Periophthalmus_magnuspinnatus
ENSCVAG00000005262	-	98	73.585	ENSPMAG00000004551	pcbp3	91	73.585	Petromyzon_marinus
ENSCVAG00000005262	-	78	88.298	ENSPMAG00000004637	-	97	88.298	Petromyzon_marinus
ENSCVAG00000005262	-	99	90.323	ENSPCIG00000028092	-	99	90.323	Phascolarctos_cinereus
ENSCVAG00000005262	-	99	92.988	ENSPLAG00000004074	-	92	92.988	Poecilia_latipinna
ENSCVAG00000005262	-	100	80.000	ENSPLAG00000011449	pcbp3	100	76.000	Poecilia_latipinna
ENSCVAG00000005262	-	100	89.706	ENSPMEG00000006653	-	100	89.706	Poecilia_mexicana
ENSCVAG00000005262	-	100	89.548	ENSPMEG00000021239	pcbp3	100	89.548	Poecilia_mexicana
ENSCVAG00000005262	-	97	92.857	ENSPREG00000015736	pcbp3	99	92.857	Poecilia_reticulata
ENSCVAG00000005262	-	100	96.865	ENSPREG00000020585	-	100	96.865	Poecilia_reticulata
ENSCVAG00000005262	-	97	94.516	ENSPNYG00000012326	pcbp3	95	94.516	Pundamilia_nyererei
ENSCVAG00000005262	-	100	96.552	ENSPNYG00000013205	-	100	96.552	Pundamilia_nyererei
ENSCVAG00000005262	-	100	98.754	ENSPNAG00000015104	pcbp3	100	98.754	Pygocentrus_nattereri
ENSCVAG00000005262	-	96	93.137	ENSPNAG00000008541	-	98	93.137	Pygocentrus_nattereri
ENSCVAG00000005262	-	99	96.855	ENSRNOG00000001245	Pcbp3	99	96.855	Rattus_norvegicus
ENSCVAG00000005262	-	99	85.758	ENSRBIG00000028177	-	91	85.758	Rhinopithecus_bieti
ENSCVAG00000005262	-	99	90.828	ENSSHAG00000007890	-	99	90.828	Sarcophilus_harrisii
ENSCVAG00000005262	-	100	97.859	ENSSFOG00015010205	pcbp3	100	97.859	Scleropages_formosus
ENSCVAG00000005262	-	97	83.974	ENSSFOG00015007118	-	95	83.974	Scleropages_formosus
ENSCVAG00000005262	-	100	89.714	ENSSFOG00015014706	pcbp3	100	89.714	Scleropages_formosus
ENSCVAG00000005262	-	97	95.130	ENSSMAG00000011929	pcbp3	97	95.130	Scophthalmus_maximus
ENSCVAG00000005262	-	100	98.165	ENSSMAG00000003135	-	100	98.165	Scophthalmus_maximus
ENSCVAG00000005262	-	97	87.688	ENSSDUG00000011608	pcbp3	99	87.688	Seriola_dumerili
ENSCVAG00000005262	-	100	92.727	ENSSDUG00000008502	-	100	92.727	Seriola_dumerili
ENSCVAG00000005262	-	100	99.083	ENSSLDG00000020161	-	100	99.083	Seriola_lalandi_dorsalis
ENSCVAG00000005262	-	97	87.688	ENSSLDG00000008518	pcbp3	99	87.688	Seriola_lalandi_dorsalis
ENSCVAG00000005262	-	97	81.443	ENSSPUG00000013214	-	92	82.927	Sphenodon_punctatus
ENSCVAG00000005262	-	100	78.000	ENSSPAG00000023341	-	100	78.000	Stegastes_partitus
ENSCVAG00000005262	-	88	95.222	ENSSPAG00000004190	-	100	95.222	Stegastes_partitus
ENSCVAG00000005262	-	99	88.166	ENSTGUG00000003316	-	99	88.166	Taeniopygia_guttata
ENSCVAG00000005262	-	98	89.809	ENSTGUG00000008158	-	99	89.809	Taeniopygia_guttata
ENSCVAG00000005262	-	99	92.429	ENSTRUG00000006280	-	99	92.429	Takifugu_rubripes
ENSCVAG00000005262	-	100	91.765	ENSTRUG00000013604	pcbp3	100	91.765	Takifugu_rubripes
ENSCVAG00000005262	-	99	84.211	ENSTTRG00000015075	-	99	84.211	Tursiops_truncatus
ENSCVAG00000005262	-	93	74.221	ENSXETG00000010491	pcbp2	77	74.221	Xenopus_tropicalis
ENSCVAG00000005262	-	98	89.521	ENSXETG00000011483	pcbp1	99	89.521	Xenopus_tropicalis
ENSCVAG00000005262	-	100	89.548	ENSXCOG00000020481	pcbp3	100	89.548	Xiphophorus_couchianus
ENSCVAG00000005262	-	100	99.388	ENSXMAG00000028711	-	100	99.388	Xiphophorus_maculatus
ENSCVAG00000005262	-	100	90.341	ENSXMAG00000008175	pcbp3	100	90.341	Xiphophorus_maculatus