EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000005345 (Gene tree)
Gene ID: 107087779
Gene Symbol: hdlbpb
Alias: fa07b03|sb:eu532|si:dkey-38p12.2|wu:fa07b03
Full Name: vigilin-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 32131 bases
Position: chrKL652693.1:850481-882611
Accession: 107087779
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000003981	KH_1	PF00013.29	1.4e-192	1	14
ENSCVAP00000003981	KH_1	PF00013.29	1.4e-192	2	14
ENSCVAP00000003981	KH_1	PF00013.29	1.4e-192	3	14
ENSCVAP00000003981	KH_1	PF00013.29	1.4e-192	4	14
ENSCVAP00000003981	KH_1	PF00013.29	1.4e-192	5	14
ENSCVAP00000003981	KH_1	PF00013.29	1.4e-192	6	14
ENSCVAP00000003981	KH_1	PF00013.29	1.4e-192	7	14
ENSCVAP00000003981	KH_1	PF00013.29	1.4e-192	8	14
ENSCVAP00000003981	KH_1	PF00013.29	1.4e-192	9	14
ENSCVAP00000003981	KH_1	PF00013.29	1.4e-192	10	14
ENSCVAP00000003981	KH_1	PF00013.29	1.4e-192	11	14
ENSCVAP00000003981	KH_1	PF00013.29	1.4e-192	12	14
ENSCVAP00000003981	KH_1	PF00013.29	1.4e-192	13	14
ENSCVAP00000003981	KH_1	PF00013.29	1.4e-192	14	14
ENSCVAP00000004007	KH_1	PF00013.29	1.7e-191	1	14
ENSCVAP00000004007	KH_1	PF00013.29	1.7e-191	2	14
ENSCVAP00000004007	KH_1	PF00013.29	1.7e-191	3	14
ENSCVAP00000004007	KH_1	PF00013.29	1.7e-191	4	14
ENSCVAP00000004007	KH_1	PF00013.29	1.7e-191	5	14
ENSCVAP00000004007	KH_1	PF00013.29	1.7e-191	6	14
ENSCVAP00000004007	KH_1	PF00013.29	1.7e-191	7	14
ENSCVAP00000004007	KH_1	PF00013.29	1.7e-191	8	14
ENSCVAP00000004007	KH_1	PF00013.29	1.7e-191	9	14
ENSCVAP00000004007	KH_1	PF00013.29	1.7e-191	10	14
ENSCVAP00000004007	KH_1	PF00013.29	1.7e-191	11	14
ENSCVAP00000004007	KH_1	PF00013.29	1.7e-191	12	14
ENSCVAP00000004007	KH_1	PF00013.29	1.7e-191	13	14
ENSCVAP00000004007	KH_1	PF00013.29	1.7e-191	14	14

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000009078	-	6813	XM_015379525	ENSCVAP00000004007	1268 (aa)	XP_015235011	UPI000742B385
ENSCVAT00000009123	-	3648	-	ENSCVAP00000003981	1215 (aa)	-	-

Gene Model

Click here to download ENSCVAG00000005345's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000005345's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000005345	hdlbpb	100	71.104	ENSCVAG00000017892	hdlbpa	100	71.026

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000005345	hdlbpb	100	95.662	ENSAPOG00000006904	hdlbpb	100	95.662	Acanthochromis_polyacanthus
ENSCVAG00000005345	hdlbpb	100	90.581	ENSACIG00000016154	hdlbpb	100	90.816	Amphilophus_citrinellus
ENSCVAG00000005345	hdlbpb	100	96.215	ENSAOCG00000004083	hdlbpb	100	96.215	Amphiprion_ocellaris
ENSCVAG00000005345	hdlbpb	100	96.136	ENSAPEG00000012270	hdlbpb	100	96.136	Amphiprion_percula
ENSCVAG00000005345	hdlbpb	100	95.505	ENSATEG00000019877	hdlbpb	100	95.505	Anabas_testudineus
ENSCVAG00000005345	hdlbpb	100	81.546	ENSACAG00000003606	-	100	81.467	Anolis_carolinensis
ENSCVAG00000005345	hdlbpb	100	95.505	ENSACLG00000006618	hdlbpb	100	95.505	Astatotilapia_calliptera
ENSCVAG00000005345	hdlbpb	100	77.577	ENSAMXG00000019946	hdlbpb	100	77.655	Astyanax_mexicanus
ENSCVAG00000005345	hdlbpb	100	94.322	ENSCSEG00000000955	hdlbpb	100	94.322	Cynoglossus_semilaevis
ENSCVAG00000005345	hdlbpb	99	85.320	ENSDARG00000061864	hdlbpb	99	85.241	Danio_rerio
ENSCVAG00000005345	hdlbpb	96	70.351	ENSEBUG00000005304	hdlbpb	96	70.180	Eptatretus_burgeri
ENSCVAG00000005345	hdlbpb	100	66.610	ENSELUG00000019925	hdlbpb	100	78.083	Esox_lucius
ENSCVAG00000005345	hdlbpb	100	34.769	ENSFHEG00000001701	hdlbpb	100	92.508	Fundulus_heteroclitus
ENSCVAG00000005345	hdlbpb	96	86.888	ENSGMOG00000004522	hdlbpb	78	86.888	Gadus_morhua
ENSCVAG00000005345	hdlbpb	100	97.161	ENSGAFG00000005278	hdlbpb	100	97.161	Gambusia_affinis
ENSCVAG00000005345	hdlbpb	99	91.081	ENSGACG00000019361	hdlbpb	100	91.081	Gasterosteus_aculeatus
ENSCVAG00000005345	hdlbpb	100	95.347	ENSHBUG00000018434	hdlbpb	100	95.347	Haplochromis_burtoni
ENSCVAG00000005345	hdlbpb	100	84.961	ENSIPUG00000003291	HDLBP	100	85.266	Ictalurus_punctatus
ENSCVAG00000005345	hdlbpb	100	96.688	ENSKMAG00000016562	hdlbpb	100	96.688	Kryptolebias_marmoratus
ENSCVAG00000005345	hdlbpb	100	95.347	ENSLBEG00000027855	hdlbpb	100	95.347	Labrus_bergylta
ENSCVAG00000005345	hdlbpb	100	84.845	ENSLACG00000007661	hdlbpb	90	84.845	Latimeria_chalumnae
ENSCVAG00000005345	hdlbpb	100	82.506	ENSLOCG00000013909	hdlbpb	100	82.506	Lepisosteus_oculatus
ENSCVAG00000005345	hdlbpb	100	95.978	ENSMAMG00000003035	hdlbpb	100	95.978	Mastacembelus_armatus
ENSCVAG00000005345	hdlbpb	100	95.505	ENSMZEG00005021465	hdlbpb	100	95.505	Maylandia_zebra
ENSCVAG00000005345	hdlbpb	100	93.927	ENSMMOG00000012525	hdlbpb	100	93.927	Mola_mola
ENSCVAG00000005345	hdlbpb	100	93.218	ENSMALG00000008938	hdlbpb	100	93.218	Monopterus_albus
ENSCVAG00000005345	hdlbpb	100	95.584	ENSNBRG00000002236	hdlbpb	100	95.584	Neolamprologus_brichardi
ENSCVAG00000005345	hdlbpb	100	95.347	ENSONIG00000009211	hdlbpb	100	95.347	Oreochromis_niloticus
ENSCVAG00000005345	hdlbpb	100	94.795	ENSORLG00000006581	hdlbpb	100	94.795	Oryzias_latipes
ENSCVAG00000005345	hdlbpb	100	94.874	ENSORLG00020010012	hdlbpb	100	94.874	Oryzias_latipes_hni
ENSCVAG00000005345	hdlbpb	100	95.032	ENSORLG00015006863	hdlbpb	100	95.032	Oryzias_latipes_hsok
ENSCVAG00000005345	hdlbpb	100	95.347	ENSOMEG00000011131	hdlbpb	100	95.347	Oryzias_melastigma
ENSCVAG00000005345	hdlbpb	100	88.486	ENSPKIG00000005966	hdlbpb	100	88.486	Paramormyrops_kingsleyae
ENSCVAG00000005345	hdlbpb	90	94.167	ENSPMGG00000019853	hdlbpb	99	94.167	Periophthalmus_magnuspinnatus
ENSCVAG00000005345	hdlbpb	92	64.901	ENSPMAG00000000249	-	99	64.744	Petromyzon_marinus
ENSCVAG00000005345	hdlbpb	97	74.561	ENSPMAG00000002131	hdlbpb	100	74.561	Petromyzon_marinus
ENSCVAG00000005345	hdlbpb	100	96.646	ENSPFOG00000008755	hdlbpb	100	96.646	Poecilia_formosa
ENSCVAG00000005345	hdlbpb	100	97.713	ENSPLAG00000007055	hdlbpb	100	97.713	Poecilia_latipinna
ENSCVAG00000005345	hdlbpb	100	97.634	ENSPMEG00000001952	hdlbpb	100	97.634	Poecilia_mexicana
ENSCVAG00000005345	hdlbpb	100	97.397	ENSPREG00000012848	hdlbpb	100	97.397	Poecilia_reticulata
ENSCVAG00000005345	hdlbpb	100	95.347	ENSPNYG00000022467	hdlbpb	100	95.347	Pundamilia_nyererei
ENSCVAG00000005345	hdlbpb	100	87.303	ENSPNAG00000011104	hdlbpb	100	87.303	Pygocentrus_nattereri
ENSCVAG00000005345	hdlbpb	100	88.364	ENSSFOG00015023199	hdlbpb	100	88.364	Scleropages_formosus
ENSCVAG00000005345	hdlbpb	100	95.505	ENSSMAG00000008790	hdlbpb	100	95.505	Scophthalmus_maximus
ENSCVAG00000005345	hdlbpb	100	96.530	ENSSDUG00000020694	hdlbpb	100	96.530	Seriola_dumerili
ENSCVAG00000005345	hdlbpb	100	96.057	ENSSLDG00000020807	hdlbpb	100	96.057	Seriola_lalandi_dorsalis
ENSCVAG00000005345	hdlbpb	100	82.177	ENSSPUG00000018688	-	100	82.177	Sphenodon_punctatus
ENSCVAG00000005345	hdlbpb	100	96.215	ENSSPAG00000016969	hdlbpb	100	96.215	Stegastes_partitus
ENSCVAG00000005345	hdlbpb	98	93.060	ENSTRUG00000012888	hdlbpb	99	91.528	Takifugu_rubripes
ENSCVAG00000005345	hdlbpb	99	92.874	ENSTNIG00000002555	hdlbpb	100	92.874	Tetraodon_nigroviridis
ENSCVAG00000005345	hdlbpb	100	84.707	ENSXCOG00000001797	hdlbpb	100	84.707	Xiphophorus_couchianus
ENSCVAG00000005345	hdlbpb	100	97.082	ENSXMAG00000015633	hdlbpb	100	97.082	Xiphophorus_maculatus