EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000005458 (Gene tree)
Gene ID: 107089377
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 1A
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 6362 bases
Position: chrKL652749.1:999085-1005446
Accession: 107089377
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000004166	RRM_1	PF00076.22	4.1e-34	1	2
ENSCVAP00000004166	RRM_1	PF00076.22	4.1e-34	2	2
ENSCVAP00000004170	RRM_1	PF00076.22	2e-33	1	2
ENSCVAP00000004170	RRM_1	PF00076.22	2e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000008796	-	2770	XM_015382124	ENSCVAP00000004170	247 (aa)	XP_015237610	UPI000742A444
ENSCVAT00000008806	-	609	-	ENSCVAP00000004166	202 (aa)	-	-

Gene Model

Click here to download ENSCVAG00000005458's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000005458's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000005458	-	86	45.405	ENSCVAG00000017240	srsf5b	55	45.699
ENSCVAG00000005458	-	90	86.813	ENSCVAG00000018617	-	78	87.113
ENSCVAG00000005458	-	86	41.146	ENSCVAG00000016982	srsf5a	97	40.714
ENSCVAG00000005458	-	61	45.669	ENSCVAG00000001863	SRSF6	93	45.669
ENSCVAG00000005458	-	88	62.712	ENSCVAG00000021417	srsf9	74	64.674

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000005458	-	98	86.179	ENSG00000136450	SRSF1	94	86.458	Homo_sapiens
ENSCVAG00000005458	-	91	91.979	ENSAPOG00000008542	-	80	92.965	Acanthochromis_polyacanthus
ENSCVAG00000005458	-	90	86.813	ENSAPOG00000002748	-	78	87.113	Acanthochromis_polyacanthus
ENSCVAG00000005458	-	91	86.339	ENSAMEG00000002635	SRSF1	77	87.692	Ailuropoda_melanoleuca
ENSCVAG00000005458	-	90	86.264	ENSACIG00000008091	srsf1a	82	86.598	Amphilophus_citrinellus
ENSCVAG00000005458	-	91	91.979	ENSAOCG00000000337	-	80	92.965	Amphiprion_ocellaris
ENSCVAG00000005458	-	90	86.813	ENSAOCG00000010671	-	82	87.113	Amphiprion_ocellaris
ENSCVAG00000005458	-	91	91.979	ENSAPEG00000023352	-	79	92.965	Amphiprion_percula
ENSCVAG00000005458	-	90	86.813	ENSAPEG00000009915	-	82	87.113	Amphiprion_percula
ENSCVAG00000005458	-	90	86.813	ENSATEG00000022403	-	77	87.113	Anabas_testudineus
ENSCVAG00000005458	-	93	90.476	ENSATEG00000021567	-	81	90.909	Anabas_testudineus
ENSCVAG00000005458	-	91	88.525	ENSACAG00000005542	-	78	88.718	Anolis_carolinensis
ENSCVAG00000005458	-	98	86.179	ENSANAG00000020583	-	95	84.058	Aotus_nancymaae
ENSCVAG00000005458	-	93	59.893	ENSANAG00000025417	-	73	62.051	Aotus_nancymaae
ENSCVAG00000005458	-	60	75.352	ENSAMXG00000024373	-	71	77.070	Astyanax_mexicanus
ENSCVAG00000005458	-	95	84.647	ENSAMXG00000035996	srsf1a	79	89.000	Astyanax_mexicanus
ENSCVAG00000005458	-	98	86.179	ENSBTAG00000014766	SRSF1	78	89.744	Bos_taurus
ENSCVAG00000005458	-	98	86.179	ENSCJAG00000041713	-	95	84.058	Callithrix_jacchus
ENSCVAG00000005458	-	91	81.967	ENSCJAG00000008111	-	86	82.051	Callithrix_jacchus
ENSCVAG00000005458	-	98	86.179	ENSCAFG00000017430	SRSF1	76	89.744	Canis_familiaris
ENSCVAG00000005458	-	98	86.179	ENSCAFG00020025632	-	76	89.744	Canis_lupus_dingo
ENSCVAG00000005458	-	91	89.617	ENSCHIG00000010787	SRSF1	78	89.744	Capra_hircus
ENSCVAG00000005458	-	98	86.179	ENSTSYG00000013899	-	95	84.058	Carlito_syrichta
ENSCVAG00000005458	-	98	86.179	ENSCPOG00000032681	-	78	89.744	Cavia_porcellus
ENSCVAG00000005458	-	98	86.179	ENSCCAG00000029484	-	95	84.058	Cebus_capucinus
ENSCVAG00000005458	-	98	86.179	ENSCATG00000042294	-	95	84.058	Cercocebus_atys
ENSCVAG00000005458	-	98	86.179	ENSCLAG00000014707	-	78	89.744	Chinchilla_lanigera
ENSCVAG00000005458	-	98	85.366	ENSCSAG00000005642	-	76	88.718	Chlorocebus_sabaeus
ENSCVAG00000005458	-	91	89.617	ENSCHOG00000001899	SRSF1	78	89.744	Choloepus_hoffmanni
ENSCVAG00000005458	-	98	85.772	ENSCPBG00000009851	-	78	89.231	Chrysemys_picta_bellii
ENSCVAG00000005458	-	98	86.179	ENSCANG00000029726	-	95	84.058	Colobus_angolensis_palliatus
ENSCVAG00000005458	-	98	86.179	ENSCGRG00001000670	Srsf1	76	89.744	Cricetulus_griseus_chok1gshd
ENSCVAG00000005458	-	98	86.179	ENSCGRG00000005590	Srsf1	78	89.744	Cricetulus_griseus_crigri
ENSCVAG00000005458	-	93	82.587	ENSCSEG00000009973	-	80	84.211	Cynoglossus_semilaevis
ENSCVAG00000005458	-	90	88.525	ENSCSEG00000014272	-	78	88.718	Cynoglossus_semilaevis
ENSCVAG00000005458	-	92	89.730	ENSDARG00000017843	srsf1b	80	89.848	Danio_rerio
ENSCVAG00000005458	-	92	86.528	ENSDARG00000057691	srsf1a	100	87.047	Danio_rerio
ENSCVAG00000005458	-	98	86.179	ENSDNOG00000011737	-	76	89.744	Dasypus_novemcinctus
ENSCVAG00000005458	-	98	86.179	ENSDORG00000015082	Srsf1	78	89.744	Dipodomys_ordii
ENSCVAG00000005458	-	98	83.333	ENSETEG00000005349	-	68	83.333	Echinops_telfairi
ENSCVAG00000005458	-	98	86.179	ENSEASG00005002922	-	76	89.744	Equus_asinus_asinus
ENSCVAG00000005458	-	91	89.617	ENSECAG00000016654	SRSF1	78	89.744	Equus_caballus
ENSCVAG00000005458	-	98	83.838	ENSEEUG00000009255	-	62	89.617	Erinaceus_europaeus
ENSCVAG00000005458	-	92	88.108	ENSELUG00000021646	srsf1a	77	87.817	Esox_lucius
ENSCVAG00000005458	-	98	86.179	ENSFCAG00000002250	-	97	84.694	Felis_catus
ENSCVAG00000005458	-	74	86.567	ENSFALG00000005062	-	76	69.231	Ficedula_albicollis
ENSCVAG00000005458	-	98	86.179	ENSFDAG00000010646	-	78	89.744	Fukomys_damarensis
ENSCVAG00000005458	-	90	86.813	ENSFHEG00000003174	srsf1a	82	87.113	Fundulus_heteroclitus
ENSCVAG00000005458	-	91	83.186	ENSGMOG00000014787	-	80	83.505	Gadus_morhua
ENSCVAG00000005458	-	91	89.071	ENSGALG00000005525	SRSF1	78	89.231	Gallus_gallus
ENSCVAG00000005458	-	97	82.051	ENSGACG00000020621	srsf1b	78	84.615	Gasterosteus_aculeatus
ENSCVAG00000005458	-	98	85.772	ENSGAGG00000022965	-	76	89.231	Gopherus_agassizii
ENSCVAG00000005458	-	98	86.179	ENSGGOG00000004386	SRSF1	95	84.058	Gorilla_gorilla
ENSCVAG00000005458	-	90	86.264	ENSHBUG00000016788	srsf1a	80	86.598	Haplochromis_burtoni
ENSCVAG00000005458	-	76	90.196	ENSHGLG00000000600	-	76	91.515	Heterocephalus_glaber_female
ENSCVAG00000005458	-	76	90.196	ENSHGLG00000000669	-	76	91.515	Heterocephalus_glaber_female
ENSCVAG00000005458	-	98	86.179	ENSHGLG00100016906	-	78	89.744	Heterocephalus_glaber_male
ENSCVAG00000005458	-	92	83.422	ENSHCOG00000018918	srsf1a	78	84.925	Hippocampus_comes
ENSCVAG00000005458	-	90	87.634	ENSIPUG00000017039	srsf1a	79	88.384	Ictalurus_punctatus
ENSCVAG00000005458	-	91	89.130	ENSIPUG00000008750	srsf1b	79	89.286	Ictalurus_punctatus
ENSCVAG00000005458	-	98	86.179	ENSSTOG00000000243	-	92	89.189	Ictidomys_tridecemlineatus
ENSCVAG00000005458	-	98	86.179	ENSJJAG00000000102	-	78	89.744	Jaculus_jaculus
ENSCVAG00000005458	-	62	83.333	ENSJJAG00000014464	-	93	82.677	Jaculus_jaculus
ENSCVAG00000005458	-	90	86.813	ENSKMAG00000019232	srsf1a	78	87.113	Kryptolebias_marmoratus
ENSCVAG00000005458	-	90	86.813	ENSLBEG00000020864	-	82	87.113	Labrus_bergylta
ENSCVAG00000005458	-	92	86.096	ENSLBEG00000015294	-	80	86.935	Labrus_bergylta
ENSCVAG00000005458	-	91	86.413	ENSLACG00000014160	srsf1a	72	87.179	Latimeria_chalumnae
ENSCVAG00000005458	-	91	87.978	ENSLOCG00000005994	srsf1a	78	88.205	Lepisosteus_oculatus
ENSCVAG00000005458	-	91	89.617	ENSLAFG00000025743	SRSF1	78	89.744	Loxodonta_africana
ENSCVAG00000005458	-	98	86.179	ENSMFAG00000040003	-	95	84.058	Macaca_fascicularis
ENSCVAG00000005458	-	98	83.333	ENSMMUG00000003260	-	94	85.787	Macaca_mulatta
ENSCVAG00000005458	-	98	86.179	ENSMMUG00000004725	SRSF1	95	84.058	Macaca_mulatta
ENSCVAG00000005458	-	98	82.927	ENSMNEG00000015983	-	76	86.154	Macaca_nemestrina
ENSCVAG00000005458	-	98	86.179	ENSMNEG00000027680	-	95	84.058	Macaca_nemestrina
ENSCVAG00000005458	-	91	84.153	ENSMLEG00000015243	-	76	85.128	Mandrillus_leucophaeus
ENSCVAG00000005458	-	91	89.617	ENSMLEG00000040509	SRSF1	78	89.744	Mandrillus_leucophaeus
ENSCVAG00000005458	-	91	88.525	ENSMAMG00000019691	-	80	89.744	Mastacembelus_armatus
ENSCVAG00000005458	-	91	89.071	ENSMAMG00000019687	-	78	90.256	Mastacembelus_armatus
ENSCVAG00000005458	-	90	86.813	ENSMAMG00000018454	-	78	87.113	Mastacembelus_armatus
ENSCVAG00000005458	-	98	86.179	ENSMAUG00000021845	Srsf1	78	89.744	Mesocricetus_auratus
ENSCVAG00000005458	-	98	86.179	ENSMICG00000013639	-	95	84.058	Microcebus_murinus
ENSCVAG00000005458	-	98	86.179	ENSMOCG00000001996	Srsf1	78	89.744	Microtus_ochrogaster
ENSCVAG00000005458	-	90	86.264	ENSMMOG00000014354	srsf1a	82	86.598	Mola_mola
ENSCVAG00000005458	-	98	83.333	ENSMODG00000014781	-	62	89.617	Monodelphis_domestica
ENSCVAG00000005458	-	91	72.678	ENSMALG00000007763	-	77	78.462	Monopterus_albus
ENSCVAG00000005458	-	91	85.792	ENSMALG00000017129	-	75	86.598	Monopterus_albus
ENSCVAG00000005458	-	98	86.179	MGP_CAROLIEiJ_G0016943	Srsf1	91	89.189	Mus_caroli
ENSCVAG00000005458	-	98	86.179	ENSMUSG00000018379	Srsf1	91	89.189	Mus_musculus
ENSCVAG00000005458	-	98	86.179	MGP_PahariEiJ_G0018074	Srsf1	72	96.053	Mus_pahari
ENSCVAG00000005458	-	98	86.179	MGP_SPRETEiJ_G0017790	Srsf1	91	89.189	Mus_spretus
ENSCVAG00000005458	-	91	89.617	ENSMPUG00000015369	SRSF1	78	89.744	Mustela_putorius_furo
ENSCVAG00000005458	-	91	82.514	ENSMLUG00000023995	-	77	83.077	Myotis_lucifugus
ENSCVAG00000005458	-	91	89.617	ENSMLUG00000011040	SRSF1	78	89.744	Myotis_lucifugus
ENSCVAG00000005458	-	91	89.617	ENSNGAG00000011395	Srsf1	78	89.744	Nannospalax_galili
ENSCVAG00000005458	-	98	78.601	ENSNBRG00000008041	srsf1b	78	75.897	Neolamprologus_brichardi
ENSCVAG00000005458	-	98	86.179	ENSNLEG00000008088	-	95	84.058	Nomascus_leucogenys
ENSCVAG00000005458	-	62	85.600	ENSMEUG00000002783	-	98	85.714	Notamacropus_eugenii
ENSCVAG00000005458	-	60	90.909	ENSOPRG00000001234	-	72	92.481	Ochotona_princeps
ENSCVAG00000005458	-	98	86.179	ENSODEG00000011481	-	78	89.744	Octodon_degus
ENSCVAG00000005458	-	94	87.931	ENSONIG00000004860	-	79	88.718	Oreochromis_niloticus
ENSCVAG00000005458	-	90	86.264	ENSONIG00000013160	-	77	86.598	Oreochromis_niloticus
ENSCVAG00000005458	-	98	67.200	ENSOCUG00000010894	-	74	72.105	Oryctolagus_cuniculus
ENSCVAG00000005458	-	90	86.813	ENSORLG00000004580	srsf1a	78	87.113	Oryzias_latipes
ENSCVAG00000005458	-	90	86.813	ENSORLG00020009456	srsf1a	82	87.113	Oryzias_latipes_hni
ENSCVAG00000005458	-	90	86.813	ENSORLG00015014384	srsf1a	82	87.113	Oryzias_latipes_hsok
ENSCVAG00000005458	-	82	86.061	ENSOMEG00000004106	srsf1a	71	86.441	Oryzias_melastigma
ENSCVAG00000005458	-	91	89.617	ENSOGAG00000025950	-	78	89.744	Otolemur_garnettii
ENSCVAG00000005458	-	91	84.153	ENSOARG00000008323	SRSF1	77	84.615	Ovis_aries
ENSCVAG00000005458	-	98	86.179	ENSPPAG00000043403	-	95	84.058	Pan_paniscus
ENSCVAG00000005458	-	98	86.179	ENSPPRG00000004238	-	97	84.694	Panthera_pardus
ENSCVAG00000005458	-	98	86.179	ENSPTRG00000049077	SRSF1	95	84.058	Pan_troglodytes
ENSCVAG00000005458	-	98	86.179	ENSPANG00000022305	-	95	84.058	Papio_anubis
ENSCVAG00000005458	-	98	67.073	ENSPANG00000030275	-	75	63.819	Papio_anubis
ENSCVAG00000005458	-	91	88.525	ENSPKIG00000012857	srsf1b	78	88.718	Paramormyrops_kingsleyae
ENSCVAG00000005458	-	92	87.027	ENSPKIG00000007204	srsf1a	84	86.802	Paramormyrops_kingsleyae
ENSCVAG00000005458	-	91	81.622	ENSPSIG00000009000	-	72	91.791	Pelodiscus_sinensis
ENSCVAG00000005458	-	92	85.185	ENSPMGG00000013112	-	81	86.170	Periophthalmus_magnuspinnatus
ENSCVAG00000005458	-	90	86.264	ENSPMGG00000005467	-	77	87.634	Periophthalmus_magnuspinnatus
ENSCVAG00000005458	-	98	86.179	ENSPEMG00000021416	Srsf1	78	89.744	Peromyscus_maniculatus_bairdii
ENSCVAG00000005458	-	91	89.071	ENSPCIG00000006076	-	78	89.744	Phascolarctos_cinereus
ENSCVAG00000005458	-	100	98.785	ENSPFOG00000018325	-	88	98.785	Poecilia_formosa
ENSCVAG00000005458	-	100	98.785	ENSPLAG00000008416	srsf1b	100	98.785	Poecilia_latipinna
ENSCVAG00000005458	-	100	98.785	ENSPMEG00000002388	-	100	98.785	Poecilia_mexicana
ENSCVAG00000005458	-	62	81.600	ENSPMEG00000020607	-	98	81.600	Poecilia_mexicana
ENSCVAG00000005458	-	62	81.600	ENSPMEG00000014312	-	98	81.600	Poecilia_mexicana
ENSCVAG00000005458	-	95	83.246	ENSPREG00000009667	srsf1a	78	87.113	Poecilia_reticulata
ENSCVAG00000005458	-	98	86.179	ENSPPYG00000008240	SRSF1	78	89.744	Pongo_abelii
ENSCVAG00000005458	-	91	89.617	ENSPCAG00000005199	SRSF1	78	89.744	Procavia_capensis
ENSCVAG00000005458	-	98	86.179	ENSPCOG00000023654	-	95	84.058	Propithecus_coquereli
ENSCVAG00000005458	-	93	68.617	ENSPCOG00000025736	-	94	70.202	Propithecus_coquereli
ENSCVAG00000005458	-	59	96.491	ENSPVAG00000000519	-	53	95.652	Pteropus_vampyrus
ENSCVAG00000005458	-	91	86.885	ENSPNAG00000014601	srsf1b	78	86.667	Pygocentrus_nattereri
ENSCVAG00000005458	-	95	84.454	ENSPNAG00000022241	srsf1a	79	87.817	Pygocentrus_nattereri
ENSCVAG00000005458	-	91	89.617	ENSRNOG00000050323	Srsf1	78	89.744	Rattus_norvegicus
ENSCVAG00000005458	-	98	86.179	ENSRBIG00000034445	-	95	84.058	Rhinopithecus_bieti
ENSCVAG00000005458	-	98	86.179	ENSRROG00000041506	-	95	84.058	Rhinopithecus_roxellana
ENSCVAG00000005458	-	98	86.179	ENSSBOG00000025377	-	95	84.058	Saimiri_boliviensis_boliviensis
ENSCVAG00000005458	-	91	89.071	ENSSHAG00000002552	-	78	89.744	Sarcophilus_harrisii
ENSCVAG00000005458	-	91	87.432	ENSSFOG00015004800	srsf1a	77	87.692	Scleropages_formosus
ENSCVAG00000005458	-	90	86.264	ENSSMAG00000007018	-	78	86.598	Scophthalmus_maximus
ENSCVAG00000005458	-	91	87.234	ENSSMAG00000009719	-	78	89.000	Scophthalmus_maximus
ENSCVAG00000005458	-	98	75.620	ENSSDUG00000003929	-	82	82.653	Seriola_dumerili
ENSCVAG00000005458	-	90	86.813	ENSSDUG00000011303	-	82	87.113	Seriola_dumerili
ENSCVAG00000005458	-	92	81.720	ENSSLDG00000016895	-	77	82.796	Seriola_lalandi_dorsalis
ENSCVAG00000005458	-	91	78.261	ENSSLDG00000016868	-	76	77.041	Seriola_lalandi_dorsalis
ENSCVAG00000005458	-	90	86.813	ENSSLDG00000010543	-	78	87.113	Seriola_lalandi_dorsalis
ENSCVAG00000005458	-	92	88.172	ENSSARG00000010949	-	62	89.617	Sorex_araneus
ENSCVAG00000005458	-	98	85.772	ENSSPUG00000000804	-	98	84.184	Sphenodon_punctatus
ENSCVAG00000005458	-	90	87.363	ENSSPAG00000022562	-	78	87.629	Stegastes_partitus
ENSCVAG00000005458	-	92	89.796	ENSSPAG00000014152	-	81	89.904	Stegastes_partitus
ENSCVAG00000005458	-	98	86.179	ENSSSCG00000017626	-	78	89.744	Sus_scrofa
ENSCVAG00000005458	-	60	90.164	ENSTGUG00000008416	-	72	91.791	Taeniopygia_guttata
ENSCVAG00000005458	-	90	86.264	ENSTRUG00000003691	srsf1a	78	86.082	Takifugu_rubripes
ENSCVAG00000005458	-	90	86.264	ENSTNIG00000016223	srsf1a	77	86.082	Tetraodon_nigroviridis
ENSCVAG00000005458	-	98	82.828	ENSTBEG00000015378	-	62	87.978	Tupaia_belangeri
ENSCVAG00000005458	-	60	90.909	ENSTTRG00000007310	SRSF1	72	92.481	Tursiops_truncatus
ENSCVAG00000005458	-	91	89.617	ENSUAMG00000009858	SRSF1	78	89.744	Ursus_americanus
ENSCVAG00000005458	-	98	86.179	ENSUMAG00000000455	-	76	89.744	Ursus_maritimus
ENSCVAG00000005458	-	91	89.071	ENSVPAG00000010094	SRSF1	78	89.231	Vicugna_pacos
ENSCVAG00000005458	-	98	86.179	ENSVVUG00000011882	-	76	89.744	Vulpes_vulpes
ENSCVAG00000005458	-	91	84.699	ENSXETG00000008954	srsf1	79	83.491	Xenopus_tropicalis
ENSCVAG00000005458	-	90	86.813	ENSXMAG00000011766	srsf1a	78	87.113	Xiphophorus_maculatus