EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000005472 (Gene tree)
Gene ID: 107102025
Gene Symbol: -
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: RNA-binding protein 38-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 11080 bases
Position: chrKL653689.1:106952-118031
Accession: 107102025
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000004191	RRM_1	PF00076.22	9.6e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000008752	-	2258	XM_015401164	ENSCVAP00000004191	244 (aa)	XP_015256650	UPI000742695E

Gene Model

Click here to download ENSCVAG00000005472's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000005472's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000005472	-	73	66.495	ENSCVAG00000020675	rbm24a	98	61.157
ENSCVAG00000005472	-	60	73.548	ENSCVAG00000011805	rbm24b	98	60.643
ENSCVAG00000005472	-	99	62.249	ENSCVAG00000015952	rbm38	98	62.948

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000005472	-	92	66.809	ENSG00000132819	RBM38	91	91.071	Homo_sapiens
ENSCVAG00000005472	-	100	65.737	ENSAPOG00000003301	rbm38	98	64.542	Acanthochromis_polyacanthus
ENSCVAG00000005472	-	100	89.344	ENSAPOG00000009939	-	100	89.344	Acanthochromis_polyacanthus
ENSCVAG00000005472	-	100	64.286	ENSACIG00000000010	rbm38	98	63.095	Amphilophus_citrinellus
ENSCVAG00000005472	-	100	89.344	ENSACIG00000012502	-	100	91.200	Amphilophus_citrinellus
ENSCVAG00000005472	-	97	89.030	ENSAOCG00000012559	RBM38	100	89.030	Amphiprion_ocellaris
ENSCVAG00000005472	-	100	65.737	ENSAOCG00000013497	-	98	64.542	Amphiprion_ocellaris
ENSCVAG00000005472	-	100	65.737	ENSAPEG00000013137	rbm38	98	64.542	Amphiprion_percula
ENSCVAG00000005472	-	100	88.525	ENSAPEG00000023581	-	100	88.525	Amphiprion_percula
ENSCVAG00000005472	-	100	89.754	ENSATEG00000016710	-	100	89.754	Anabas_testudineus
ENSCVAG00000005472	-	100	61.961	ENSATEG00000016366	rbm38	98	61.905	Anabas_testudineus
ENSCVAG00000005472	-	93	65.957	ENSACAG00000016238	RBM38	89	65.801	Anolis_carolinensis
ENSCVAG00000005472	-	92	67.660	ENSANAG00000031959	RBM38	78	95.745	Aotus_nancymaae
ENSCVAG00000005472	-	100	88.115	ENSACLG00000019514	-	100	88.115	Astatotilapia_calliptera
ENSCVAG00000005472	-	100	77.869	ENSAMXG00000015601	-	100	78.689	Astyanax_mexicanus
ENSCVAG00000005472	-	96	64.530	ENSAMXG00000038120	rbm38	97	63.248	Astyanax_mexicanus
ENSCVAG00000005472	-	92	66.239	ENSBTAG00000008105	RBM38	89	64.935	Bos_taurus
ENSCVAG00000005472	-	53	66.923	WBGene00006321	sup-12	62	79.787	Caenorhabditis_elegans
ENSCVAG00000005472	-	92	67.660	ENSCJAG00000019139	RBM38	78	95.745	Callithrix_jacchus
ENSCVAG00000005472	-	92	68.376	ENSCAFG00020021943	RBM38	89	68.103	Canis_lupus_dingo
ENSCVAG00000005472	-	99	63.158	ENSCHIG00000002609	RBM38	92	62.753	Capra_hircus
ENSCVAG00000005472	-	92	67.660	ENSCPOG00000012781	RBM38	89	67.382	Cavia_porcellus
ENSCVAG00000005472	-	92	67.660	ENSCCAG00000036872	RBM38	78	95.745	Cebus_capucinus
ENSCVAG00000005472	-	92	66.379	ENSCATG00000032133	RBM38	78	95.745	Cercocebus_atys
ENSCVAG00000005472	-	78	75.377	ENSCLAG00000005906	RBM38	78	78.022	Chinchilla_lanigera
ENSCVAG00000005472	-	92	66.379	ENSCSAG00000015503	RBM38	76	76.374	Chlorocebus_sabaeus
ENSCVAG00000005472	-	93	68.670	ENSCPBG00000024059	RBM38	99	68.261	Chrysemys_picta_bellii
ENSCVAG00000005472	-	62	62.733	ENSCING00000025102	-	76	58.989	Ciona_intestinalis
ENSCVAG00000005472	-	61	63.057	ENSCSAVG00000001132	-	67	59.444	Ciona_savignyi
ENSCVAG00000005472	-	92	50.218	ENSCANG00000030105	-	64	56.425	Colobus_angolensis_palliatus
ENSCVAG00000005472	-	72	75.824	ENSCGRG00001012928	Rbm38	89	65.086	Cricetulus_griseus_chok1gshd
ENSCVAG00000005472	-	77	61.053	ENSCSEG00000020943	rbm38	61	64.674	Cynoglossus_semilaevis
ENSCVAG00000005472	-	100	86.475	ENSCSEG00000004701	-	100	86.475	Cynoglossus_semilaevis
ENSCVAG00000005472	-	86	78.571	ENSDARG00000058818	rbm38	82	82.051	Danio_rerio
ENSCVAG00000005472	-	92	66.522	ENSDNOG00000032004	RBM38	98	65.939	Dasypus_novemcinctus
ENSCVAG00000005472	-	92	66.234	ENSECAG00000007700	RBM38	89	65.948	Equus_caballus
ENSCVAG00000005472	-	92	66.239	ENSEEUG00000013489	RBM38	89	67.094	Erinaceus_europaeus
ENSCVAG00000005472	-	90	64.444	ENSELUG00000000585	-	80	72.043	Esox_lucius
ENSCVAG00000005472	-	100	79.518	ENSELUG00000005849	-	100	78.715	Esox_lucius
ENSCVAG00000005472	-	92	66.667	ENSFCAG00000042916	RBM38	78	94.681	Felis_catus
ENSCVAG00000005472	-	69	76.744	ENSFALG00000010805	RBM38	88	76.744	Ficedula_albicollis
ENSCVAG00000005472	-	100	89.516	ENSFHEG00000006160	-	100	90.726	Fundulus_heteroclitus
ENSCVAG00000005472	-	100	61.961	ENSFHEG00000017748	rbm38	98	62.948	Fundulus_heteroclitus
ENSCVAG00000005472	-	73	87.151	ENSGMOG00000016655	-	96	87.151	Gadus_morhua
ENSCVAG00000005472	-	93	66.379	ENSGALG00000026081	RBM38	99	67.241	Gallus_gallus
ENSCVAG00000005472	-	95	64.655	ENSGACG00000015224	rbm38	100	64.655	Gasterosteus_aculeatus
ENSCVAG00000005472	-	94	80.000	ENSGACG00000009873	-	100	80.000	Gasterosteus_aculeatus
ENSCVAG00000005472	-	93	68.670	ENSGAGG00000001187	RBM38	99	69.565	Gopherus_agassizii
ENSCVAG00000005472	-	100	88.115	ENSHBUG00000011778	-	100	88.115	Haplochromis_burtoni
ENSCVAG00000005472	-	100	63.922	ENSHBUG00000012058	rbm38	98	63.492	Haplochromis_burtoni
ENSCVAG00000005472	-	92	64.530	ENSHGLG00000015077	RBM38	89	66.953	Heterocephalus_glaber_female
ENSCVAG00000005472	-	84	86.408	ENSHCOG00000005622	-	58	86.634	Hippocampus_comes
ENSCVAG00000005472	-	92	50.420	ENSHCOG00000019040	rbm38	78	56.122	Hippocampus_comes
ENSCVAG00000005472	-	100	73.469	ENSIPUG00000019349	-	100	72.245	Ictalurus_punctatus
ENSCVAG00000005472	-	92	59.657	ENSKMAG00000012402	rbm38	98	60.086	Kryptolebias_marmoratus
ENSCVAG00000005472	-	100	85.484	ENSLBEG00000016163	RBM38	100	85.484	Labrus_bergylta
ENSCVAG00000005472	-	100	63.095	ENSLBEG00000018878	rbm38	98	62.302	Labrus_bergylta
ENSCVAG00000005472	-	100	75.820	ENSLOCG00000003456	rbm38	100	74.590	Lepisosteus_oculatus
ENSCVAG00000005472	-	92	66.379	ENSMFAG00000043808	RBM38	78	95.745	Macaca_fascicularis
ENSCVAG00000005472	-	92	66.379	ENSMMUG00000031391	RBM38	78	95.745	Macaca_mulatta
ENSCVAG00000005472	-	92	66.379	ENSMNEG00000034683	RBM38	78	95.745	Macaca_nemestrina
ENSCVAG00000005472	-	100	64.591	ENSMAMG00000024135	rbm38	98	64.427	Mastacembelus_armatus
ENSCVAG00000005472	-	100	88.115	ENSMAMG00000020499	RBM38	100	88.115	Mastacembelus_armatus
ENSCVAG00000005472	-	100	88.115	ENSMZEG00005000849	-	100	88.115	Maylandia_zebra
ENSCVAG00000005472	-	100	63.922	ENSMZEG00005026036	rbm38	98	63.492	Maylandia_zebra
ENSCVAG00000005472	-	72	77.473	ENSMAUG00000021211	Rbm38	89	67.241	Mesocricetus_auratus
ENSCVAG00000005472	-	92	67.234	ENSMICG00000038011	RBM38	98	66.810	Microcebus_murinus
ENSCVAG00000005472	-	72	76.923	ENSMOCG00000008715	Rbm38	89	66.810	Microtus_ochrogaster
ENSCVAG00000005472	-	100	88.115	ENSMMOG00000020051	-	100	88.115	Mola_mola
ENSCVAG00000005472	-	93	65.217	ENSMODG00000016458	RBM38	91	66.087	Monodelphis_domestica
ENSCVAG00000005472	-	77	91.534	ENSMALG00000004680	RBM38	72	91.534	Monopterus_albus
ENSCVAG00000005472	-	69	71.765	ENSMALG00000022327	rbm38	72	71.765	Monopterus_albus
ENSCVAG00000005472	-	92	64.103	MGP_CAROLIEiJ_G0024745	Rbm38	89	65.948	Mus_caroli
ENSCVAG00000005472	-	92	64.103	ENSMUSG00000027510	Rbm38	89	65.948	Mus_musculus
ENSCVAG00000005472	-	92	64.103	MGP_PahariEiJ_G0026186	Rbm38	89	66.094	Mus_pahari
ENSCVAG00000005472	-	92	64.103	MGP_SPRETEiJ_G0025665	Rbm38	89	65.948	Mus_spretus
ENSCVAG00000005472	-	72	77.473	ENSMPUG00000006518	RBM38	93	75.132	Mustela_putorius_furo
ENSCVAG00000005472	-	92	64.502	ENSMLUG00000011140	RBM38	98	64.069	Myotis_lucifugus
ENSCVAG00000005472	-	100	88.115	ENSNBRG00000022545	-	100	88.115	Neolamprologus_brichardi
ENSCVAG00000005472	-	100	64.314	ENSNBRG00000022685	rbm38	98	63.889	Neolamprologus_brichardi
ENSCVAG00000005472	-	92	66.809	ENSODEG00000007980	RBM38	89	66.094	Octodon_degus
ENSCVAG00000005472	-	99	64.173	ENSONIG00000017073	rbm38	100	63.745	Oreochromis_niloticus
ENSCVAG00000005472	-	99	88.066	ENSONIG00000020324	-	100	88.066	Oreochromis_niloticus
ENSCVAG00000005472	-	92	67.686	ENSOANG00000009259	RBM38	81	67.544	Ornithorhynchus_anatinus
ENSCVAG00000005472	-	96	60.744	ENSORLG00000012154	rbm38	98	59.127	Oryzias_latipes
ENSCVAG00000005472	-	100	84.959	ENSORLG00000027180	-	100	86.179	Oryzias_latipes
ENSCVAG00000005472	-	100	59.524	ENSORLG00020017871	rbm38	98	59.524	Oryzias_latipes_hni
ENSCVAG00000005472	-	100	84.959	ENSORLG00020020751	-	100	86.179	Oryzias_latipes_hni
ENSCVAG00000005472	-	100	59.921	ENSORLG00015012606	rbm38	98	59.921	Oryzias_latipes_hsok
ENSCVAG00000005472	-	100	86.531	ENSORLG00015017040	-	100	86.122	Oryzias_latipes_hsok
ENSCVAG00000005472	-	99	61.200	ENSOMEG00000006805	rbm38	96	62.397	Oryzias_melastigma
ENSCVAG00000005472	-	100	87.705	ENSOMEG00000023912	-	100	87.705	Oryzias_melastigma
ENSCVAG00000005472	-	92	67.234	ENSOGAG00000029136	RBM38	88	66.379	Otolemur_garnettii
ENSCVAG00000005472	-	92	66.667	ENSPPRG00000009507	RBM38	78	94.681	Panthera_pardus
ENSCVAG00000005472	-	58	77.852	ENSPTRG00000045845	-	80	77.852	Pan_troglodytes
ENSCVAG00000005472	-	72	76.374	ENSPTRG00000013661	RBM38	78	95.745	Pan_troglodytes
ENSCVAG00000005472	-	93	53.648	ENSPANG00000033127	-	91	53.017	Papio_anubis
ENSCVAG00000005472	-	92	66.379	ENSPANG00000020919	-	78	95.745	Papio_anubis
ENSCVAG00000005472	-	100	70.281	ENSPKIG00000025417	rbm38	100	70.281	Paramormyrops_kingsleyae
ENSCVAG00000005472	-	100	71.545	ENSPKIG00000018122	-	95	90.991	Paramormyrops_kingsleyae
ENSCVAG00000005472	-	93	68.240	ENSPSIG00000011649	RBM38	91	67.826	Pelodiscus_sinensis
ENSCVAG00000005472	-	99	60.800	ENSPMGG00000011343	rbm38	98	61.753	Periophthalmus_magnuspinnatus
ENSCVAG00000005472	-	100	80.242	ENSPMGG00000017094	-	100	80.645	Periophthalmus_magnuspinnatus
ENSCVAG00000005472	-	93	66.094	ENSPCIG00000013648	RBM38	100	62.353	Phascolarctos_cinereus
ENSCVAG00000005472	-	100	59.449	ENSPFOG00000011658	rbm38	98	61.961	Poecilia_formosa
ENSCVAG00000005472	-	100	96.341	ENSPLAG00000002500	-	100	96.341	Poecilia_latipinna
ENSCVAG00000005472	-	100	59.608	ENSPLAG00000005218	rbm38	98	61.569	Poecilia_latipinna
ENSCVAG00000005472	-	100	59.843	ENSPMEG00000015770	rbm38	98	61.961	Poecilia_mexicana
ENSCVAG00000005472	-	100	59.843	ENSPREG00000007398	rbm38	98	61.961	Poecilia_reticulata
ENSCVAG00000005472	-	92	68.103	ENSPCOG00000026201	RBM38	77	95.745	Propithecus_coquereli
ENSCVAG00000005472	-	92	44.589	ENSPVAG00000006457	RBM38	89	44.589	Pteropus_vampyrus
ENSCVAG00000005472	-	100	63.529	ENSPNYG00000021373	rbm38	98	63.095	Pundamilia_nyererei
ENSCVAG00000005472	-	100	88.115	ENSPNYG00000019727	-	100	92.000	Pundamilia_nyererei
ENSCVAG00000005472	-	80	77.436	ENSPNAG00000010596	rbm38	82	77.436	Pygocentrus_nattereri
ENSCVAG00000005472	-	100	77.049	ENSPNAG00000015123	-	97	83.459	Pygocentrus_nattereri
ENSCVAG00000005472	-	92	65.517	ENSRNOG00000006420	Rbm38	89	65.517	Rattus_norvegicus
ENSCVAG00000005472	-	93	53.913	ENSRROG00000036388	-	71	65.672	Rhinopithecus_roxellana
ENSCVAG00000005472	-	92	67.660	ENSSBOG00000031053	RBM38	88	95.745	Saimiri_boliviensis_boliviensis
ENSCVAG00000005472	-	100	68.273	ENSSFOG00015004453	rbm38	100	70.445	Scleropages_formosus
ENSCVAG00000005472	-	100	89.344	ENSSDUG00000021082	RBM38	100	89.344	Seriola_dumerili
ENSCVAG00000005472	-	100	65.476	ENSSDUG00000022611	rbm38	98	64.286	Seriola_dumerili
ENSCVAG00000005472	-	100	90.164	ENSSLDG00000011778	RBM38	100	90.164	Seriola_lalandi_dorsalis
ENSCVAG00000005472	-	100	65.476	ENSSLDG00000010845	rbm38	98	64.286	Seriola_lalandi_dorsalis
ENSCVAG00000005472	-	100	65.476	ENSSPAG00000011113	rbm38	98	64.286	Stegastes_partitus
ENSCVAG00000005472	-	100	89.344	ENSSPAG00000020989	RBM38	100	89.344	Stegastes_partitus
ENSCVAG00000005472	-	92	66.234	ENSSSCG00000007504	RBM38	89	66.234	Sus_scrofa
ENSCVAG00000005472	-	100	85.306	ENSTRUG00000019869	-	100	85.306	Takifugu_rubripes
ENSCVAG00000005472	-	96	63.333	ENSTRUG00000024954	rbm38	94	63.333	Takifugu_rubripes
ENSCVAG00000005472	-	95	83.983	ENSTNIG00000007093	-	100	83.983	Tetraodon_nigroviridis
ENSCVAG00000005472	-	72	77.473	ENSUAMG00000019780	RBM38	89	67.241	Ursus_americanus
ENSCVAG00000005472	-	92	68.376	ENSVVUG00000017246	RBM38	89	68.103	Vulpes_vulpes
ENSCVAG00000005472	-	93	65.217	ENSXETG00000011268	rbm38	97	65.517	Xenopus_tropicalis
ENSCVAG00000005472	-	82	73.558	ENSXCOG00000017324	-	68	87.898	Xiphophorus_couchianus
ENSCVAG00000005472	-	100	62.151	ENSXMAG00000023662	rbm38	98	63.347	Xiphophorus_maculatus