EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCVAG00000005489 (Gene tree)
Gene ID
107088373
Gene Symbol
pabpc1b
Alias
-
Full Name
polyadenylate-binding protein 1
Gene Type
protein_coding
Species
Cyprinodon_variegatus
Status
putative
Strand
Minus strand
Length
10519 bases
Position
chrKL652716.1:956594-967112
Accession
107088373
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCVAP00000004186PABPPF00658.181.1e-3011
ENSCVAP00000004186RRM_5PF13893.66.9e-1213
ENSCVAP00000004186RRM_5PF13893.66.9e-1223
ENSCVAP00000004186RRM_5PF13893.66.9e-1233
ENSCVAP00000004186RRM_1PF00076.227.6e-8614
ENSCVAP00000004186RRM_1PF00076.227.6e-8624
ENSCVAP00000004186RRM_1PF00076.227.6e-8634
ENSCVAP00000004186RRM_1PF00076.227.6e-8644
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCVAT00000008766-3680XM_015380501ENSCVAP00000004186635 (aa)XP_015235987UPI00074264FD
Gene Model
Click here to download ENSCVAG00000005489's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000005489's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCVAG00000005489pabpc1b5932.632ENSCVAG00000013006rbms2b5032.632
ENSCVAG00000005489pabpc1b10088.106ENSCVAG00000021872pabpc1a10087.950
ENSCVAG00000005489pabpc1b5830.208ENSCVAG00000015489tia17130.208
ENSCVAG00000005489pabpc1b5540.278ENSCVAG00000014408-5440.278
ENSCVAG00000005489pabpc1b5637.333ENSCVAG00000000300rbm195937.333
ENSCVAG00000005489pabpc1b5837.349ENSCVAG00000013913ELAVL28637.349
ENSCVAG00000005489pabpc1b5235.227ENSCVAG00000009088-5836.047
ENSCVAG00000005489pabpc1b9868.938ENSCVAG00000015943-9987.023
ENSCVAG00000005489pabpc1b5937.349ENSCVAG00000014060elavl39237.349
ENSCVAG00000005489pabpc1b5336.047ENSCVAG00000004383-5836.047
ENSCVAG00000005489pabpc1b5031.690ENSCVAG00000006051-8931.690
ENSCVAG00000005489pabpc1b9875.606ENSCVAG00000019246pabpc49876.090
ENSCVAG00000005489pabpc1b5936.145ENSCVAG00000019080elavl48631.410
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCVAG00000005489pabpc1b5879.592ENSG00000184388PABPC1L2B9879.592Homo_sapiens
ENSCVAG00000005489pabpc1b5879.592ENSG00000186288PABPC1L2A9879.592Homo_sapiens
ENSCVAG00000005489pabpc1b10088.263ENSAPOG00000015105pabpc1a10088.263Acanthochromis_polyacanthus
ENSCVAG00000005489pabpc1b10094.016ENSAPOG00000017776pabpc1b10094.016Acanthochromis_polyacanthus
ENSCVAG00000005489pabpc1b5879.592ENSAMEG00000019441-9879.592Ailuropoda_melanoleuca
ENSCVAG00000005489pabpc1b10087.950ENSACIG00000004685pabpc1a10087.950Amphilophus_citrinellus
ENSCVAG00000005489pabpc1b10087.365ENSACIG00000018366pabpc1b10087.365Amphilophus_citrinellus
ENSCVAG00000005489pabpc1b10093.701ENSAOCG00000019839pabpc1b10093.701Amphiprion_ocellaris
ENSCVAG00000005489pabpc1b10087.793ENSAOCG00000011656pabpc1a10087.950Amphiprion_ocellaris
ENSCVAG00000005489pabpc1b10087.793ENSAPEG00000006963pabpc1a10087.950Amphiprion_percula
ENSCVAG00000005489pabpc1b10093.701ENSAPEG00000010435pabpc1b10093.701Amphiprion_percula
ENSCVAG00000005489pabpc1b10087.793ENSATEG00000024852pabpc1a10087.950Anabas_testudineus
ENSCVAG00000005489pabpc1b10093.407ENSATEG00000012917pabpc1b10093.407Anabas_testudineus
ENSCVAG00000005489pabpc1b5879.592ENSANAG00000019431-9879.592Aotus_nancymaae
ENSCVAG00000005489pabpc1b5879.592ENSANAG00000019429-9879.592Aotus_nancymaae
ENSCVAG00000005489pabpc1b10092.598ENSACLG00000014335pabpc1b10092.598Astatotilapia_calliptera
ENSCVAG00000005489pabpc1b9989.474ENSACLG00000009399pabpc1a10089.474Astatotilapia_calliptera
ENSCVAG00000005489pabpc1b10092.138ENSAMXG00000008599pabpc1b10092.138Astyanax_mexicanus
ENSCVAG00000005489pabpc1b5978.537ENSBTAG00000050902-9878.537Bos_taurus
ENSCVAG00000005489pabpc1b5976.555ENSBTAG00000052491-9876.555Bos_taurus
ENSCVAG00000005489pabpc1b5879.592ENSCJAG00000041326-9879.592Callithrix_jacchus
ENSCVAG00000005489pabpc1b5978.537ENSCAFG00020002052-9878.537Canis_lupus_dingo
ENSCVAG00000005489pabpc1b5879.592ENSCHIG00000011138-9879.592Capra_hircus
ENSCVAG00000005489pabpc1b5879.592ENSCHIG00000006283-9879.592Capra_hircus
ENSCVAG00000005489pabpc1b5879.592ENSTSYG00000001775-9879.592Carlito_syrichta
ENSCVAG00000005489pabpc1b5879.592ENSCPOG00000009525-9879.592Cavia_porcellus
ENSCVAG00000005489pabpc1b5879.592ENSCCAG00000031524-9879.592Cebus_capucinus
ENSCVAG00000005489pabpc1b5879.592ENSCATG00000042826-9879.592Cercocebus_atys
ENSCVAG00000005489pabpc1b5879.592ENSCATG00000043125-9879.592Cercocebus_atys
ENSCVAG00000005489pabpc1b5878.571ENSCLAG00000017409-9878.571Chinchilla_lanigera
ENSCVAG00000005489pabpc1b5878.571ENSCLAG00000017412-9878.571Chinchilla_lanigera
ENSCVAG00000005489pabpc1b5879.592ENSCSAG00000000102-9879.592Chlorocebus_sabaeus
ENSCVAG00000005489pabpc1b5780.110ENSCGRG00001023387-9678.351Cricetulus_griseus_chok1gshd
ENSCVAG00000005489pabpc1b9988.273ENSCSEG00000013324pabpc1a9988.431Cynoglossus_semilaevis
ENSCVAG00000005489pabpc1b10088.976ENSCSEG00000015241-10088.976Cynoglossus_semilaevis
ENSCVAG00000005489pabpc1b10089.639ENSDARG00000017219pabpc1a10089.639Danio_rerio
ENSCVAG00000005489pabpc1b10091.509ENSDARG00000021140pabpc1b9993.617Danio_rerio
ENSCVAG00000005489pabpc1b5880.423ENSDNOG00000030926-9878.061Dasypus_novemcinctus
ENSCVAG00000005489pabpc1b5878.061ENSDORG00000011362-9878.061Dipodomys_ordii
ENSCVAG00000005489pabpc1b5978.155ENSEASG00005010399-9878.155Equus_asinus_asinus
ENSCVAG00000005489pabpc1b5978.155ENSECAG00000002620-9878.155Equus_caballus
ENSCVAG00000005489pabpc1b5975.000ENSEEUG00000008203-9875.000Erinaceus_europaeus
ENSCVAG00000005489pabpc1b9989.011ENSELUG00000003614pabpc1a10088.697Esox_lucius
ENSCVAG00000005489pabpc1b5959.052ENSELUG00000005389-9759.052Esox_lucius
ENSCVAG00000005489pabpc1b10089.342ENSELUG00000015062-10089.342Esox_lucius
ENSCVAG00000005489pabpc1b5879.592ENSFCAG00000039701-9879.592Felis_catus
ENSCVAG00000005489pabpc1b5879.592ENSFDAG00000005484-9879.592Fukomys_damarensis
ENSCVAG00000005489pabpc1b10094.803ENSFHEG00000008186pabpc1b10094.803Fundulus_heteroclitus
ENSCVAG00000005489pabpc1b10087.637ENSFHEG00000018979pabpc1a10087.793Fundulus_heteroclitus
ENSCVAG00000005489pabpc1b9987.031ENSGMOG00000013448pabpc1a9987.031Gadus_morhua
ENSCVAG00000005489pabpc1b10082.737ENSGMOG00000002448-10082.737Gadus_morhua
ENSCVAG00000005489pabpc1b10087.011ENSGAFG00000019750pabpc1a10087.167Gambusia_affinis
ENSCVAG00000005489pabpc1b10095.591ENSGAFG00000010193pabpc1b10095.591Gambusia_affinis
ENSCVAG00000005489pabpc1b10088.263ENSGACG00000003572pabpc1a10088.263Gasterosteus_aculeatus
ENSCVAG00000005489pabpc1b10090.328ENSGACG00000003771pabpc1b10090.513Gasterosteus_aculeatus
ENSCVAG00000005489pabpc1b5879.592ENSGGOG00000038606-9879.592Gorilla_gorilla
ENSCVAG00000005489pabpc1b5879.592ENSGGOG00000043933-9879.592Gorilla_gorilla
ENSCVAG00000005489pabpc1b10092.598ENSHBUG00000002075pabpc1b10092.598Haplochromis_burtoni
ENSCVAG00000005489pabpc1b9989.474ENSHBUG00000020487pabpc1a10089.474Haplochromis_burtoni
ENSCVAG00000005489pabpc1b5879.592ENSHGLG00000019762-9879.592Heterocephalus_glaber_female
ENSCVAG00000005489pabpc1b5879.592ENSHGLG00000019668-9879.592Heterocephalus_glaber_female
ENSCVAG00000005489pabpc1b5879.592ENSHGLG00100020854-9879.592Heterocephalus_glaber_male
ENSCVAG00000005489pabpc1b10087.637ENSHCOG00000013502pabpc1a10087.793Hippocampus_comes
ENSCVAG00000005489pabpc1b9870.192ENSHCOG00000003175pabpc1b9975.274Hippocampus_comes
ENSCVAG00000005489pabpc1b10086.950ENSIPUG00000008848pabpc1a10086.950Ictalurus_punctatus
ENSCVAG00000005489pabpc1b7455.094ENSIPUG00000021244-6555.094Ictalurus_punctatus
ENSCVAG00000005489pabpc1b10084.591ENSIPUG00000010791-10084.748Ictalurus_punctatus
ENSCVAG00000005489pabpc1b7453.731ENSIPUG00000018724-7653.731Ictalurus_punctatus
ENSCVAG00000005489pabpc1b5880.102ENSSTOG00000022096-9880.102Ictidomys_tridecemlineatus
ENSCVAG00000005489pabpc1b5880.102ENSSTOG00000026028-9880.102Ictidomys_tridecemlineatus
ENSCVAG00000005489pabpc1b5879.082ENSJJAG00000007037-9879.082Jaculus_jaculus
ENSCVAG00000005489pabpc1b10088.106ENSKMAG00000000605pabpc1a10087.950Kryptolebias_marmoratus
ENSCVAG00000005489pabpc1b10092.283ENSKMAG00000008049pabpc1b10092.598Kryptolebias_marmoratus
ENSCVAG00000005489pabpc1b10092.756ENSLBEG00000026845pabpc1b10092.756Labrus_bergylta
ENSCVAG00000005489pabpc1b10087.637ENSLBEG00000024002-10087.637Labrus_bergylta
ENSCVAG00000005489pabpc1b5878.974ENSLAFG00000023096-9878.974Loxodonta_africana
ENSCVAG00000005489pabpc1b5879.188ENSMFAG00000028878-9879.188Macaca_fascicularis
ENSCVAG00000005489pabpc1b5879.592ENSMMUG00000037681-9879.592Macaca_mulatta
ENSCVAG00000005489pabpc1b5879.592ENSMMUG00000039929-9879.592Macaca_mulatta
ENSCVAG00000005489pabpc1b5879.592ENSMMUG00000009740-9879.592Macaca_mulatta
ENSCVAG00000005489pabpc1b5879.592ENSMNEG00000037732-9879.592Macaca_nemestrina
ENSCVAG00000005489pabpc1b5879.592ENSMLEG00000027495-9879.592Mandrillus_leucophaeus
ENSCVAG00000005489pabpc1b10093.701ENSMAMG00000014610pabpc1b10093.701Mastacembelus_armatus
ENSCVAG00000005489pabpc1b10087.480ENSMAMG00000004502-10088.330Mastacembelus_armatus
ENSCVAG00000005489pabpc1b9989.474ENSMZEG00005025416pabpc1a10089.474Maylandia_zebra
ENSCVAG00000005489pabpc1b10092.598ENSMZEG00005026745pabpc1b10092.598Maylandia_zebra
ENSCVAG00000005489pabpc1b5879.592ENSMICG00000047642-9879.592Microcebus_murinus
ENSCVAG00000005489pabpc1b9987.643ENSMMOG00000018044pabpc1a10087.643Mola_mola
ENSCVAG00000005489pabpc1b10086.299ENSMMOG00000018009pabpc1b10086.457Mola_mola
ENSCVAG00000005489pabpc1b9970.801ENSMODG00000013156-9970.958Monodelphis_domestica
ENSCVAG00000005489pabpc1b9965.403ENSMODG00000015024-9965.087Monodelphis_domestica
ENSCVAG00000005489pabpc1b10087.011ENSMALG00000013020-10087.324Monopterus_albus
ENSCVAG00000005489pabpc1b10085.827ENSMALG00000006066pabpc1b10087.402Monopterus_albus
ENSCVAG00000005489pabpc1b5881.967ENSNGAG00000012688-9879.082Nannospalax_galili
ENSCVAG00000005489pabpc1b9989.474ENSNBRG00000003068-10089.474Neolamprologus_brichardi
ENSCVAG00000005489pabpc1b10092.598ENSNBRG00000013737pabpc1b10092.598Neolamprologus_brichardi
ENSCVAG00000005489pabpc1b5879.592ENSNLEG00000018128-9879.592Nomascus_leucogenys
ENSCVAG00000005489pabpc1b5879.082ENSODEG00000018540-9879.082Octodon_degus
ENSCVAG00000005489pabpc1b10092.441ENSONIG00000002717pabpc1b10092.441Oreochromis_niloticus
ENSCVAG00000005489pabpc1b10087.637ENSONIG00000006871-10087.637Oreochromis_niloticus
ENSCVAG00000005489pabpc1b5879.592ENSOCUG00000002565-9879.592Oryctolagus_cuniculus
ENSCVAG00000005489pabpc1b10085.512ENSORLG00000003008-10085.039Oryzias_latipes
ENSCVAG00000005489pabpc1b9991.211ENSORLG00000002691pabpc1a10087.324Oryzias_latipes
ENSCVAG00000005489pabpc1b10087.324ENSORLG00020022398pabpc1a10087.480Oryzias_latipes_hni
ENSCVAG00000005489pabpc1b10085.827ENSORLG00020022259-10085.354Oryzias_latipes_hni
ENSCVAG00000005489pabpc1b10085.827ENSORLG00015010932-10085.354Oryzias_latipes_hsok
ENSCVAG00000005489pabpc1b10087.167ENSORLG00015013633pabpc110087.324Oryzias_latipes_hsok
ENSCVAG00000005489pabpc1b9583.220ENSOMEG00000013627pabpc1b10083.220Oryzias_melastigma
ENSCVAG00000005489pabpc1b10087.637ENSOMEG00000020219pabpc1a10087.793Oryzias_melastigma
ENSCVAG00000005489pabpc1b5879.592ENSOGAG00000026047-9879.592Otolemur_garnettii
ENSCVAG00000005489pabpc1b5879.592ENSOGAG00000029513-9879.592Otolemur_garnettii
ENSCVAG00000005489pabpc1b5879.592ENSOARG00000005943-9879.592Ovis_aries
ENSCVAG00000005489pabpc1b5879.592ENSPPAG00000012920-9879.592Pan_paniscus
ENSCVAG00000005489pabpc1b5879.592ENSPPRG00000011804-9879.592Panthera_pardus
ENSCVAG00000005489pabpc1b5879.592ENSPPRG00000011809-9879.592Panthera_pardus
ENSCVAG00000005489pabpc1b5879.592ENSPTRG00000028252-9879.592Pan_troglodytes
ENSCVAG00000005489pabpc1b5879.592ENSPANG00000011549-9879.592Papio_anubis
ENSCVAG00000005489pabpc1b10092.138ENSPKIG00000005676pabpc1b10092.138Paramormyrops_kingsleyae
ENSCVAG00000005489pabpc1b7091.031ENSPMGG00000022487pabpc1a9291.031Periophthalmus_magnuspinnatus
ENSCVAG00000005489pabpc1b7092.601ENSPMGG00000023134-9792.601Periophthalmus_magnuspinnatus
ENSCVAG00000005489pabpc1b9970.635ENSPCIG00000016995-5470.635Phascolarctos_cinereus
ENSCVAG00000005489pabpc1b10095.906ENSPFOG00000005917pabpc1b10095.906Poecilia_formosa
ENSCVAG00000005489pabpc1b10086.482ENSPFOG00000010815pabpc1a10086.636Poecilia_formosa
ENSCVAG00000005489pabpc1b10087.950ENSPLAG00000004114pabpc1a10088.106Poecilia_latipinna
ENSCVAG00000005489pabpc1b10096.220ENSPLAG00000001388pabpc1b10096.220Poecilia_latipinna
ENSCVAG00000005489pabpc1b10095.906ENSPMEG00000014399pabpc1b10095.906Poecilia_mexicana
ENSCVAG00000005489pabpc1b10087.950ENSPMEG00000001334pabpc1a10088.106Poecilia_mexicana
ENSCVAG00000005489pabpc1b10096.220ENSPREG00000010911pabpc1b10096.220Poecilia_reticulata
ENSCVAG00000005489pabpc1b9989.016ENSPREG00000019595pabpc1a10089.016Poecilia_reticulata
ENSCVAG00000005489pabpc1b5879.592ENSPPYG00000020468-9879.592Pongo_abelii
ENSCVAG00000005489pabpc1b5979.592ENSPCAG00000005308-9879.592Procavia_capensis
ENSCVAG00000005489pabpc1b5880.102ENSPCOG00000026349-9880.102Propithecus_coquereli
ENSCVAG00000005489pabpc1b5980.000ENSPVAG00000016117-9880.000Pteropus_vampyrus
ENSCVAG00000005489pabpc1b10092.598ENSPNYG00000012578pabpc1b10092.598Pundamilia_nyererei
ENSCVAG00000005489pabpc1b10087.793ENSPNYG00000005192pabpc1a10087.793Pundamilia_nyererei
ENSCVAG00000005489pabpc1b10091.667ENSPNAG00000024626pabpc1b10091.667Pygocentrus_nattereri
ENSCVAG00000005489pabpc1b10088.697ENSPNAG00000028408pabpc1a10088.383Pygocentrus_nattereri
ENSCVAG00000005489pabpc1b5879.592ENSRBIG00000027173-9879.592Rhinopithecus_bieti
ENSCVAG00000005489pabpc1b9989.125ENSRBIG00000028738-9489.125Rhinopithecus_bieti
ENSCVAG00000005489pabpc1b5879.592ENSRROG00000017404-9879.592Rhinopithecus_roxellana
ENSCVAG00000005489pabpc1b9862.600ENSSHAG00000000511-10062.440Sarcophilus_harrisii
ENSCVAG00000005489pabpc1b10088.522ENSSFOG00015006662pabpc1a10088.522Scleropages_formosus
ENSCVAG00000005489pabpc1b7079.191ENSSFOG00015019668-9179.191Scleropages_formosus
ENSCVAG00000005489pabpc1b10091.969ENSSFOG00015002752-10091.969Scleropages_formosus
ENSCVAG00000005489pabpc1b10088.263ENSSMAG00000010803pabpc1a10088.263Scophthalmus_maximus
ENSCVAG00000005489pabpc1b10092.913ENSSMAG00000006869pabpc1b10092.913Scophthalmus_maximus
ENSCVAG00000005489pabpc1b10091.654ENSSDUG00000011965pabpc1b10091.654Seriola_dumerili
ENSCVAG00000005489pabpc1b10087.793ENSSDUG00000006675pabpc1a10087.793Seriola_dumerili
ENSCVAG00000005489pabpc1b10087.793ENSSLDG00000011661pabpc1a10087.793Seriola_lalandi_dorsalis
ENSCVAG00000005489pabpc1b10093.281ENSSLDG00000014156pabpc1b10093.281Seriola_lalandi_dorsalis
ENSCVAG00000005489pabpc1b10087.950ENSSPAG00000014453-10088.106Stegastes_partitus
ENSCVAG00000005489pabpc1b10094.646ENSSPAG00000019265pabpc1b10094.646Stegastes_partitus
ENSCVAG00000005489pabpc1b5879.592ENSSSCG00000036336-9879.592Sus_scrofa
ENSCVAG00000005489pabpc1b5879.592ENSSSCG00000032167-9879.592Sus_scrofa
ENSCVAG00000005489pabpc1b10087.167ENSTRUG00000011577-10087.167Takifugu_rubripes
ENSCVAG00000005489pabpc1b10089.780ENSTRUG00000003767-10089.623Takifugu_rubripes
ENSCVAG00000005489pabpc1b10084.105ENSTNIG00000013307pabpc1a10084.105Tetraodon_nigroviridis
ENSCVAG00000005489pabpc1b10089.671ENSTNIG00000009153pabpc1b10089.671Tetraodon_nigroviridis
ENSCVAG00000005489pabpc1b5879.592ENSTTRG00000013181-9879.592Tursiops_truncatus
ENSCVAG00000005489pabpc1b5879.592ENSUAMG00000008089-9879.592Ursus_americanus
ENSCVAG00000005489pabpc1b9753.312ENSUMAG00000023926-8967.680Ursus_maritimus
ENSCVAG00000005489pabpc1b5879.592ENSUMAG00000003364-9879.592Ursus_maritimus
ENSCVAG00000005489pabpc1b5878.500ENSVVUG00000015892-9778.500Vulpes_vulpes
ENSCVAG00000005489pabpc1b9944.719ENSXETG00000015439-10044.719Xenopus_tropicalis
ENSCVAG00000005489pabpc1b10089.449ENSXCOG00000019901pabpc1b10090.079Xiphophorus_couchianus
ENSCVAG00000005489pabpc1b10083.937ENSXCOG00000017066pabpc1a10084.724Xiphophorus_couchianus
ENSCVAG00000005489pabpc1b10096.063ENSXMAG00000003753pabpc1b10096.063Xiphophorus_maculatus
ENSCVAG00000005489pabpc1b10087.480ENSXMAG00000002555pabpc1a10087.637Xiphophorus_maculatus

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