EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000005536 (Gene tree)
Gene ID: 107088357
Gene Symbol: sf3b4
Alias: chunp6902|fb36a04|wu:fb36a04
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 5574 bases
Position: chrKL652716.1:934009-939582
Accession: 107088357
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000022717	RRM_1	PF00076.22	2.6e-39	1	2
ENSCVAP00000022717	RRM_1	PF00076.22	2.6e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000008649	-	1375	XM_015380481	ENSCVAP00000022717	389 (aa)	XP_015235967	UPI00074277D7

Gene Model

Click here to download ENSCVAG00000005536's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000005536's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000005536	sf3b4	54	100.000	ENSG00000143368	SF3B4	99	94.180	Homo_sapiens
ENSCVAG00000005536	sf3b4	59	96.507	ENSAPOG00000017647	sf3b4	67	95.489	Acanthochromis_polyacanthus
ENSCVAG00000005536	sf3b4	73	82.517	ENSACIG00000018455	sf3b4	70	95.781	Amphilophus_citrinellus
ENSCVAG00000005536	sf3b4	54	100.000	ENSAOCG00000019801	sf3b4	67	95.113	Amphiprion_ocellaris
ENSCVAG00000005536	sf3b4	54	100.000	ENSAPEG00000010365	sf3b4	67	95.113	Amphiprion_percula
ENSCVAG00000005536	sf3b4	59	96.522	ENSATEG00000012844	sf3b4	66	96.617	Anabas_testudineus
ENSCVAG00000005536	sf3b4	55	100.000	ENSACAG00000010019	SF3B4	64	88.148	Anolis_carolinensis
ENSCVAG00000005536	sf3b4	69	92.910	ENSACLG00000014260	sf3b4	67	94.757	Astatotilapia_calliptera
ENSCVAG00000005536	sf3b4	59	95.633	ENSAMXG00000008282	sf3b4	66	94.677	Astyanax_mexicanus
ENSCVAG00000005536	sf3b4	63	64.113	ENSCHIG00000006654	-	50	74.627	Capra_hircus
ENSCVAG00000005536	sf3b4	54	99.057	ENSCCAG00000021751	-	59	86.347	Cebus_capucinus
ENSCVAG00000005536	sf3b4	75	68.065	ENSCCAG00000019823	-	61	77.734	Cebus_capucinus
ENSCVAG00000005536	sf3b4	55	100.000	ENSCPBG00000008041	SF3B4	64	87.778	Chrysemys_picta_bellii
ENSCVAG00000005536	sf3b4	58	87.946	ENSCING00000002337	-	64	84.454	Ciona_intestinalis
ENSCVAG00000005536	sf3b4	57	86.184	ENSCSAVG00000007809	-	91	89.474	Ciona_savignyi
ENSCVAG00000005536	sf3b4	76	86.379	ENSCSEG00000015258	sf3b4	56	93.680	Cynoglossus_semilaevis
ENSCVAG00000005536	sf3b4	59	96.507	ENSDARG00000018574	sf3b4	66	95.076	Danio_rerio
ENSCVAG00000005536	sf3b4	95	64.249	ENSDNOG00000037231	-	56	79.821	Dasypus_novemcinctus
ENSCVAG00000005536	sf3b4	57	86.425	FBgn0015818	Spx	62	88.372	Drosophila_melanogaster
ENSCVAG00000005536	sf3b4	54	89.100	ENSETEG00000008963	SF3B4	56	84.388	Echinops_telfairi
ENSCVAG00000005536	sf3b4	88	82.133	ENSELUG00000012876	sf3b4	66	94.697	Esox_lucius
ENSCVAG00000005536	sf3b4	100	96.173	ENSFHEG00000008211	sf3b4	57	96.173	Fundulus_heteroclitus
ENSCVAG00000005536	sf3b4	59	95.197	ENSGMOG00000002519	sf3b4	70	94.937	Gadus_morhua
ENSCVAG00000005536	sf3b4	55	100.000	ENSGALG00000013352	SF3B4	64	88.889	Gallus_gallus
ENSCVAG00000005536	sf3b4	68	94.737	ENSGAFG00000010181	sf3b4	70	94.891	Gambusia_affinis
ENSCVAG00000005536	sf3b4	54	100.000	ENSGACG00000003819	sf3b4	66	93.511	Gasterosteus_aculeatus
ENSCVAG00000005536	sf3b4	55	100.000	ENSGAGG00000025055	SF3B4	56	87.778	Gopherus_agassizii
ENSCVAG00000005536	sf3b4	69	92.910	ENSHBUG00000002028	sf3b4	67	94.757	Haplochromis_burtoni
ENSCVAG00000005536	sf3b4	55	99.531	ENSHCOG00000003014	sf3b4	66	90.494	Hippocampus_comes
ENSCVAG00000005536	sf3b4	59	95.633	ENSIPUG00000012242	Sf3b4	66	94.697	Ictalurus_punctatus
ENSCVAG00000005536	sf3b4	96	55.779	ENSSTOG00000029627	-	52	72.489	Ictidomys_tridecemlineatus
ENSCVAG00000005536	sf3b4	53	71.429	ENSJJAG00000022500	Sf3b4	68	61.236	Jaculus_jaculus
ENSCVAG00000005536	sf3b4	96	87.037	ENSKMAG00000008154	sf3b4	70	94.161	Kryptolebias_marmoratus
ENSCVAG00000005536	sf3b4	60	95.279	ENSLBEG00000026818	sf3b4	66	93.985	Labrus_bergylta
ENSCVAG00000005536	sf3b4	58	95.175	ENSLACG00000004436	SF3B4	73	89.811	Latimeria_chalumnae
ENSCVAG00000005536	sf3b4	59	96.070	ENSLOCG00000009048	sf3b4	56	95.359	Lepisosteus_oculatus
ENSCVAG00000005536	sf3b4	89	60.000	ENSMFAG00000039067	-	60	75.893	Macaca_fascicularis
ENSCVAG00000005536	sf3b4	89	59.341	ENSMNEG00000031526	-	60	75.446	Macaca_nemestrina
ENSCVAG00000005536	sf3b4	61	94.515	ENSMAMG00000014692	sf3b4	67	94.361	Mastacembelus_armatus
ENSCVAG00000005536	sf3b4	69	92.910	ENSMZEG00005026741	sf3b4	67	94.757	Maylandia_zebra
ENSCVAG00000005536	sf3b4	55	100.000	ENSMGAG00000000653	SF3B4	64	88.889	Meleagris_gallopavo
ENSCVAG00000005536	sf3b4	53	98.049	ENSMOCG00000014155	-	63	85.115	Microtus_ochrogaster
ENSCVAG00000005536	sf3b4	58	96.916	ENSMALG00000006174	sf3b4	66	95.094	Monopterus_albus
ENSCVAG00000005536	sf3b4	69	92.910	ENSNBRG00000013865	sf3b4	67	94.757	Neolamprologus_brichardi
ENSCVAG00000005536	sf3b4	98	62.121	ENSNLEG00000000537	-	60	85.232	Nomascus_leucogenys
ENSCVAG00000005536	sf3b4	100	49.048	ENSNLEG00000009693	-	98	49.048	Nomascus_leucogenys
ENSCVAG00000005536	sf3b4	92	58.333	ENSODEG00000008916	-	55	74.429	Octodon_degus
ENSCVAG00000005536	sf3b4	56	82.569	ENSODEG00000003597	-	65	72.794	Octodon_degus
ENSCVAG00000005536	sf3b4	69	93.284	ENSONIG00000002730	sf3b4	67	95.131	Oreochromis_niloticus
ENSCVAG00000005536	sf3b4	67	71.269	ENSOANG00000004768	-	56	75.934	Ornithorhynchus_anatinus
ENSCVAG00000005536	sf3b4	88	86.207	ENSORLG00000003062	sf3b4	69	88.519	Oryzias_latipes
ENSCVAG00000005536	sf3b4	76	87.043	ENSORLG00020000687	sf3b4	67	88.519	Oryzias_latipes_hni
ENSCVAG00000005536	sf3b4	76	87.375	ENSORLG00015010989	sf3b4	67	88.519	Oryzias_latipes_hsok
ENSCVAG00000005536	sf3b4	59	95.259	ENSOMEG00000013694	sf3b4	68	92.937	Oryzias_melastigma
ENSCVAG00000005536	sf3b4	62	77.049	ENSOARG00000007368	-	55	80.088	Ovis_aries
ENSCVAG00000005536	sf3b4	79	71.160	ENSPPAG00000030024	-	58	83.966	Pan_paniscus
ENSCVAG00000005536	sf3b4	54	100.000	ENSPTIG00000014530	SF3B4	56	94.093	Panthera_tigris_altaica
ENSCVAG00000005536	sf3b4	79	72.347	ENSPTRG00000049727	-	59	84.388	Pan_troglodytes
ENSCVAG00000005536	sf3b4	59	94.828	ENSPKIG00000020669	sf3b4	70	94.318	Paramormyrops_kingsleyae
ENSCVAG00000005536	sf3b4	67	85.057	ENSPMAG00000007842	-	55	90.678	Petromyzon_marinus
ENSCVAG00000005536	sf3b4	68	96.241	ENSPFOG00000005754	sf3b4	100	94.937	Poecilia_formosa
ENSCVAG00000005536	sf3b4	89	95.389	ENSPLAG00000001401	sf3b4	95	95.389	Poecilia_latipinna
ENSCVAG00000005536	sf3b4	70	94.526	ENSPREG00000011076	sf3b4	68	95.985	Poecilia_reticulata
ENSCVAG00000005536	sf3b4	53	96.635	ENSPCAG00000000392	SF3B4	50	96.635	Procavia_capensis
ENSCVAG00000005536	sf3b4	69	92.910	ENSPNYG00000012700	sf3b4	67	94.757	Pundamilia_nyererei
ENSCVAG00000005536	sf3b4	59	96.070	ENSPNAG00000000686	sf3b4	67	94.697	Pygocentrus_nattereri
ENSCVAG00000005536	sf3b4	93	55.643	ENSRROG00000028213	-	58	71.179	Rhinopithecus_roxellana
ENSCVAG00000005536	sf3b4	78	61.111	ENSSBOG00000025174	-	58	68.266	Saimiri_boliviensis_boliviensis
ENSCVAG00000005536	sf3b4	62	92.946	ENSSFOG00015008864	sf3b4	65	94.318	Scleropages_formosus
ENSCVAG00000005536	sf3b4	76	90.604	ENSSMAG00000006837	sf3b4	67	95.865	Scophthalmus_maximus
ENSCVAG00000005536	sf3b4	68	93.609	ENSSDUG00000012064	sf3b4	66	95.113	Seriola_dumerili
ENSCVAG00000005536	sf3b4	68	94.361	ENSSLDG00000014226	sf3b4	66	95.865	Seriola_lalandi_dorsalis
ENSCVAG00000005536	sf3b4	76	81.481	ENSSPUG00000001028	SF3B4	59	94.915	Sphenodon_punctatus
ENSCVAG00000005536	sf3b4	59	95.652	ENSSPAG00000019219	sf3b4	66	94.361	Stegastes_partitus
ENSCVAG00000005536	sf3b4	100	48.866	ENSSSCG00000039440	-	58	61.181	Sus_scrofa
ENSCVAG00000005536	sf3b4	61	93.671	ENSTGUG00000004470	SF3B4	93	95.359	Taeniopygia_guttata
ENSCVAG00000005536	sf3b4	81	87.736	ENSTRUG00000004516	sf3b4	67	93.609	Takifugu_rubripes
ENSCVAG00000005536	sf3b4	68	90.602	ENSTNIG00000009156	sf3b4	68	89.630	Tetraodon_nigroviridis
ENSCVAG00000005536	sf3b4	53	96.618	ENSVVUG00000022697	-	54	84.211	Vulpes_vulpes
ENSCVAG00000005536	sf3b4	78	78.878	ENSXETG00000011038	sf3b4	58	95.909	Xenopus_tropicalis
ENSCVAG00000005536	sf3b4	68	95.113	ENSXCOG00000019895	sf3b4	70	95.255	Xiphophorus_couchianus
ENSCVAG00000005536	sf3b4	68	95.113	ENSXMAG00000003772	sf3b4	70	95.255	Xiphophorus_maculatus