EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000005663 (Gene tree)
Gene ID: 107097933
Gene Symbol: si:ch73-63e15.2
Alias: si:dkey-19f23.4
Full Name: strawberry notch homolog 2
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 90365 bases
Position: chrKL653235.1:336154-426518
Accession: 107097933
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000004337	ResIII	PF04851.15	9.1e-08	1	1
ENSCVAP00000004342	ResIII	PF04851.15	9.2e-08	1	1
ENSCVAP00000004361	ResIII	PF04851.15	9.8e-08	1	1
ENSCVAP00000004372	ResIII	PF04851.15	1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000008449	-	9004	XM_015395296	ENSCVAP00000004372	1569 (aa)	XP_015250782	UPI0007425BED
ENSCVAT00000008468	-	8923	-	ENSCVAP00000004361	1542 (aa)	-	-
ENSCVAT00000008483	-	8694	XM_015395298	ENSCVAP00000004342	1492 (aa)	XP_015250784	-
ENSCVAT00000008501	-	8784	XM_015395299	ENSCVAP00000004337	1483 (aa)	XP_015250785	-

Gene Model

Click here to download ENSCVAG00000005663's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000005663's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000005663	si:ch73-63e15.2	65	64.853	ENSCVAG00000007038	sbno1	73	65.596

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000005663	si:ch73-63e15.2	77	67.549	ENSG00000064932	SBNO2	88	68.089	Homo_sapiens
ENSCVAG00000005663	si:ch73-63e15.2	100	79.095	ENSAPOG00000003185	si:ch73-63e15.2	100	78.864	Acanthochromis_polyacanthus
ENSCVAG00000005663	si:ch73-63e15.2	89	82.855	ENSAOCG00000016581	si:ch73-63e15.2	94	87.723	Amphiprion_ocellaris
ENSCVAG00000005663	si:ch73-63e15.2	89	82.925	ENSAPEG00000008862	si:ch73-63e15.2	100	79.355	Amphiprion_percula
ENSCVAG00000005663	si:ch73-63e15.2	90	80.959	ENSATEG00000023838	si:ch73-63e15.2	99	84.051	Anabas_testudineus
ENSCVAG00000005663	si:ch73-63e15.2	77	70.940	ENSAPLG00000007158	SBNO2	89	71.416	Anas_platyrhynchos
ENSCVAG00000005663	si:ch73-63e15.2	77	67.265	ENSANAG00000026685	SBNO2	89	67.464	Aotus_nancymaae
ENSCVAG00000005663	si:ch73-63e15.2	100	76.600	ENSACLG00000005090	si:ch73-63e15.2	100	76.856	Astatotilapia_calliptera
ENSCVAG00000005663	si:ch73-63e15.2	88	74.924	ENSAMXG00000015881	si:ch73-63e15.2	93	73.319	Astyanax_mexicanus
ENSCVAG00000005663	si:ch73-63e15.2	79	78.136	ENSAMXG00000018868	sbno2a	97	78.498	Astyanax_mexicanus
ENSCVAG00000005663	si:ch73-63e15.2	77	68.809	ENSBTAG00000020780	SBNO2	88	68.686	Bos_taurus
ENSCVAG00000005663	si:ch73-63e15.2	76	69.576	ENSCAFG00000019543	SBNO2	90	66.322	Canis_familiaris
ENSCVAG00000005663	si:ch73-63e15.2	76	69.576	ENSCAFG00020017115	SBNO2	95	66.322	Canis_lupus_dingo
ENSCVAG00000005663	si:ch73-63e15.2	76	69.291	ENSCHIG00000026127	SBNO2	90	65.794	Capra_hircus
ENSCVAG00000005663	si:ch73-63e15.2	76	66.290	ENSCAPG00000005731	SBNO2	94	66.521	Cavia_aperea
ENSCVAG00000005663	si:ch73-63e15.2	76	66.551	ENSCPOG00000007477	SBNO2	86	66.812	Cavia_porcellus
ENSCVAG00000005663	si:ch73-63e15.2	77	67.037	ENSCCAG00000037518	SBNO2	89	67.662	Cebus_capucinus
ENSCVAG00000005663	si:ch73-63e15.2	77	68.003	ENSCATG00000037046	SBNO2	88	68.259	Cercocebus_atys
ENSCVAG00000005663	si:ch73-63e15.2	78	67.891	ENSCLAG00000010178	SBNO2	99	68.668	Chinchilla_lanigera
ENSCVAG00000005663	si:ch73-63e15.2	76	68.512	ENSCSAG00000012317	SBNO2	90	65.440	Chlorocebus_sabaeus
ENSCVAG00000005663	si:ch73-63e15.2	77	69.810	ENSCPBG00000008920	SBNO2	78	85.106	Chrysemys_picta_bellii
ENSCVAG00000005663	si:ch73-63e15.2	74	67.765	ENSCANG00000036745	SBNO2	96	68.032	Colobus_angolensis_palliatus
ENSCVAG00000005663	si:ch73-63e15.2	76	66.349	ENSCGRG00001023960	Sbno2	88	64.701	Cricetulus_griseus_chok1gshd
ENSCVAG00000005663	si:ch73-63e15.2	76	67.851	ENSCGRG00000011984	Sbno2	88	66.141	Cricetulus_griseus_crigri
ENSCVAG00000005663	si:ch73-63e15.2	79	82.995	ENSCSEG00000006856	si:ch73-63e15.2	97	86.551	Cynoglossus_semilaevis
ENSCVAG00000005663	si:ch73-63e15.2	81	75.082	ENSDARG00000098801	sbno2a	94	72.630	Danio_rerio
ENSCVAG00000005663	si:ch73-63e15.2	100	68.176	ENSDARG00000016188	SBNO2	87	77.997	Danio_rerio
ENSCVAG00000005663	si:ch73-63e15.2	76	68.571	ENSDORG00000002916	Sbno2	88	66.446	Dipodomys_ordii
ENSCVAG00000005663	si:ch73-63e15.2	77	68.691	ENSEASG00005021621	SBNO2	89	69.060	Equus_asinus_asinus
ENSCVAG00000005663	si:ch73-63e15.2	77	68.435	ENSECAG00000011827	SBNO2	89	69.060	Equus_caballus
ENSCVAG00000005663	si:ch73-63e15.2	100	72.284	ENSELUG00000020457	si:ch73-63e15.2	99	71.197	Esox_lucius
ENSCVAG00000005663	si:ch73-63e15.2	77	70.698	ENSFALG00000013988	SBNO2	92	67.005	Ficedula_albicollis
ENSCVAG00000005663	si:ch73-63e15.2	74	66.490	ENSFDAG00000015186	SBNO2	88	65.810	Fukomys_damarensis
ENSCVAG00000005663	si:ch73-63e15.2	100	84.810	ENSFHEG00000022262	si:ch73-63e15.2	100	84.756	Fundulus_heteroclitus
ENSCVAG00000005663	si:ch73-63e15.2	77	86.240	ENSGMOG00000007542	si:ch73-63e15.2	95	86.240	Gadus_morhua
ENSCVAG00000005663	si:ch73-63e15.2	89	64.989	ENSGALG00000037522	SBNO2	94	64.989	Gallus_gallus
ENSCVAG00000005663	si:ch73-63e15.2	80	93.263	ENSGAFG00000004860	si:ch73-63e15.2	93	93.862	Gambusia_affinis
ENSCVAG00000005663	si:ch73-63e15.2	76	87.565	ENSGACG00000013190	si:ch73-63e15.2	95	87.565	Gasterosteus_aculeatus
ENSCVAG00000005663	si:ch73-63e15.2	86	67.174	ENSGAGG00000008348	SBNO2	95	67.174	Gopherus_agassizii
ENSCVAG00000005663	si:ch73-63e15.2	100	77.358	ENSHBUG00000010742	si:ch73-63e15.2	100	77.264	Haplochromis_burtoni
ENSCVAG00000005663	si:ch73-63e15.2	76	68.221	ENSHGLG00000008739	SBNO2	88	65.850	Heterocephalus_glaber_female
ENSCVAG00000005663	si:ch73-63e15.2	78	67.630	ENSHGLG00100005269	SBNO2	99	68.371	Heterocephalus_glaber_male
ENSCVAG00000005663	si:ch73-63e15.2	82	82.049	ENSHCOG00000000884	si:ch73-63e15.2	97	79.366	Hippocampus_comes
ENSCVAG00000005663	si:ch73-63e15.2	78	80.155	ENSIPUG00000000537	si:ch73-63e15.2	85	80.155	Ictalurus_punctatus
ENSCVAG00000005663	si:ch73-63e15.2	91	71.264	ENSIPUG00000019672	sbno2	99	76.522	Ictalurus_punctatus
ENSCVAG00000005663	si:ch73-63e15.2	76	68.284	ENSSTOG00000025832	SBNO2	88	67.027	Ictidomys_tridecemlineatus
ENSCVAG00000005663	si:ch73-63e15.2	76	65.744	ENSJJAG00000017397	Sbno2	89	64.374	Jaculus_jaculus
ENSCVAG00000005663	si:ch73-63e15.2	100	78.909	ENSKMAG00000005541	si:ch73-63e15.2	99	78.909	Kryptolebias_marmoratus
ENSCVAG00000005663	si:ch73-63e15.2	100	75.382	ENSLBEG00000025016	si:ch73-63e15.2	99	86.984	Labrus_bergylta
ENSCVAG00000005663	si:ch73-63e15.2	80	81.963	ENSLOCG00000004643	si:ch73-63e15.2	85	82.762	Lepisosteus_oculatus
ENSCVAG00000005663	si:ch73-63e15.2	76	65.425	ENSLAFG00000008824	SBNO2	89	65.847	Loxodonta_africana
ENSCVAG00000005663	si:ch73-63e15.2	77	66.297	ENSMFAG00000040030	SBNO2	90	66.638	Macaca_fascicularis
ENSCVAG00000005663	si:ch73-63e15.2	76	68.512	ENSMMUG00000010886	SBNO2	87	67.220	Macaca_mulatta
ENSCVAG00000005663	si:ch73-63e15.2	77	68.089	ENSMNEG00000039927	SBNO2	88	68.345	Macaca_nemestrina
ENSCVAG00000005663	si:ch73-63e15.2	70	69.137	ENSMLEG00000038556	SBNO2	90	69.512	Mandrillus_leucophaeus
ENSCVAG00000005663	si:ch73-63e15.2	89	81.871	ENSMAMG00000018758	si:ch73-63e15.2	100	76.923	Mastacembelus_armatus
ENSCVAG00000005663	si:ch73-63e15.2	100	77.143	ENSMZEG00005010682	si:ch73-63e15.2	100	76.904	Maylandia_zebra
ENSCVAG00000005663	si:ch73-63e15.2	77	71.538	ENSMGAG00000003801	SBNO2	90	71.883	Meleagris_gallopavo
ENSCVAG00000005663	si:ch73-63e15.2	76	68.225	ENSMAUG00000008034	Sbno2	85	68.881	Mesocricetus_auratus
ENSCVAG00000005663	si:ch73-63e15.2	77	67.665	ENSMICG00000013071	SBNO2	88	68.225	Microcebus_murinus
ENSCVAG00000005663	si:ch73-63e15.2	76	68.166	ENSMOCG00000010504	Sbno2	88	66.389	Microtus_ochrogaster
ENSCVAG00000005663	si:ch73-63e15.2	77	70.256	ENSMODG00000005382	SBNO2	98	62.324	Monodelphis_domestica
ENSCVAG00000005663	si:ch73-63e15.2	63	80.553	ENSMALG00000021831	si:ch73-63e15.2	99	80.556	Monopterus_albus
ENSCVAG00000005663	si:ch73-63e15.2	76	68.139	ENSMUSG00000035673	Sbno2	97	66.639	Mus_musculus
ENSCVAG00000005663	si:ch73-63e15.2	76	68.139	MGP_PahariEiJ_G0030976	Sbno2	88	66.584	Mus_pahari
ENSCVAG00000005663	si:ch73-63e15.2	76	68.312	MGP_SPRETEiJ_G0016381	Sbno2	94	66.667	Mus_spretus
ENSCVAG00000005663	si:ch73-63e15.2	65	71.256	ENSMPUG00000008747	SBNO2	91	71.371	Mustela_putorius_furo
ENSCVAG00000005663	si:ch73-63e15.2	77	66.695	ENSNGAG00000004308	Sbno2	90	65.311	Nannospalax_galili
ENSCVAG00000005663	si:ch73-63e15.2	81	87.364	ENSNBRG00000022968	si:ch73-63e15.2	99	89.744	Neolamprologus_brichardi
ENSCVAG00000005663	si:ch73-63e15.2	73	68.794	ENSNLEG00000001305	SBNO2	89	68.794	Nomascus_leucogenys
ENSCVAG00000005663	si:ch73-63e15.2	62	66.172	ENSMEUG00000013511	-	78	66.172	Notamacropus_eugenii
ENSCVAG00000005663	si:ch73-63e15.2	76	67.102	ENSOPRG00000017238	SBNO2	94	68.042	Ochotona_princeps
ENSCVAG00000005663	si:ch73-63e15.2	76	67.530	ENSODEG00000011822	SBNO2	89	65.441	Octodon_degus
ENSCVAG00000005663	si:ch73-63e15.2	100	77.474	ENSONIG00000002490	si:ch73-63e15.2	98	87.373	Oreochromis_niloticus
ENSCVAG00000005663	si:ch73-63e15.2	100	76.578	ENSORLG00000000913	si:ch73-63e15.2	100	76.612	Oryzias_latipes
ENSCVAG00000005663	si:ch73-63e15.2	100	76.578	ENSORLG00020010978	si:ch73-63e15.2	100	76.612	Oryzias_latipes_hni
ENSCVAG00000005663	si:ch73-63e15.2	100	76.643	ENSORLG00015000202	si:ch73-63e15.2	100	76.678	Oryzias_latipes_hsok
ENSCVAG00000005663	si:ch73-63e15.2	89	79.466	ENSOMEG00000000359	si:ch73-63e15.2	100	75.579	Oryzias_melastigma
ENSCVAG00000005663	si:ch73-63e15.2	76	66.494	ENSOARG00000011130	SBNO2	86	66.579	Ovis_aries
ENSCVAG00000005663	si:ch73-63e15.2	77	66.723	ENSPPAG00000032482	SBNO2	90	67.090	Pan_paniscus
ENSCVAG00000005663	si:ch73-63e15.2	77	67.549	ENSPTRG00000010185	SBNO2	88	68.003	Pan_troglodytes
ENSCVAG00000005663	si:ch73-63e15.2	77	64.249	ENSPANG00000009658	SBNO2	88	64.761	Papio_anubis
ENSCVAG00000005663	si:ch73-63e15.2	92	83.333	ENSPKIG00000024201	si:ch73-63e15.2	87	80.948	Paramormyrops_kingsleyae
ENSCVAG00000005663	si:ch73-63e15.2	68	78.355	ENSPKIG00000009707	-	98	69.561	Paramormyrops_kingsleyae
ENSCVAG00000005663	si:ch73-63e15.2	65	73.077	ENSPSIG00000002852	SBNO2	99	73.178	Pelodiscus_sinensis
ENSCVAG00000005663	si:ch73-63e15.2	82	79.984	ENSPMGG00000014375	si:ch73-63e15.2	98	77.117	Periophthalmus_magnuspinnatus
ENSCVAG00000005663	si:ch73-63e15.2	76	66.984	ENSPEMG00000024122	Sbno2	88	64.937	Peromyscus_maniculatus_bairdii
ENSCVAG00000005663	si:ch73-63e15.2	76	70.553	ENSPCIG00000011264	SBNO2	89	67.063	Phascolarctos_cinereus
ENSCVAG00000005663	si:ch73-63e15.2	100	83.385	ENSPFOG00000004096	si:ch73-63e15.2	100	90.652	Poecilia_formosa
ENSCVAG00000005663	si:ch73-63e15.2	100	83.562	ENSPLAG00000014653	si:ch73-63e15.2	100	83.848	Poecilia_latipinna
ENSCVAG00000005663	si:ch73-63e15.2	100	83.893	ENSPMEG00000002129	si:ch73-63e15.2	100	83.851	Poecilia_mexicana
ENSCVAG00000005663	si:ch73-63e15.2	100	83.913	ENSPREG00000006755	si:ch73-63e15.2	100	84.534	Poecilia_reticulata
ENSCVAG00000005663	si:ch73-63e15.2	71	68.534	ENSPCAG00000012256	SBNO2	77	69.238	Procavia_capensis
ENSCVAG00000005663	si:ch73-63e15.2	78	62.063	ENSPCOG00000015216	SBNO2	88	62.095	Propithecus_coquereli
ENSCVAG00000005663	si:ch73-63e15.2	100	77.945	ENSPNYG00000019926	si:ch73-63e15.2	100	77.394	Pundamilia_nyererei
ENSCVAG00000005663	si:ch73-63e15.2	78	78.662	ENSPNAG00000026609	sbno2a	99	69.894	Pygocentrus_nattereri
ENSCVAG00000005663	si:ch73-63e15.2	88	75.915	ENSPNAG00000020260	si:ch73-63e15.2	91	75.915	Pygocentrus_nattereri
ENSCVAG00000005663	si:ch73-63e15.2	76	68.225	ENSRNOG00000013987	Sbno2	89	68.712	Rattus_norvegicus
ENSCVAG00000005663	si:ch73-63e15.2	71	66.451	ENSRBIG00000009740	SBNO2	86	67.653	Rhinopithecus_bieti
ENSCVAG00000005663	si:ch73-63e15.2	68	70.595	ENSRROG00000044671	SBNO2	86	70.714	Rhinopithecus_roxellana
ENSCVAG00000005663	si:ch73-63e15.2	77	67.208	ENSSBOG00000023562	SBNO2	89	67.577	Saimiri_boliviensis_boliviensis
ENSCVAG00000005663	si:ch73-63e15.2	75	71.064	ENSSHAG00000010241	SBNO2	98	70.226	Sarcophilus_harrisii
ENSCVAG00000005663	si:ch73-63e15.2	79	80.272	ENSSFOG00015005861	si:ch73-63e15.2	95	80.867	Scleropages_formosus
ENSCVAG00000005663	si:ch73-63e15.2	100	76.913	ENSSMAG00000012489	si:ch73-63e15.2	93	79.038	Scophthalmus_maximus
ENSCVAG00000005663	si:ch73-63e15.2	100	77.693	ENSSDUG00000003527	si:ch73-63e15.2	100	77.325	Seriola_dumerili
ENSCVAG00000005663	si:ch73-63e15.2	100	77.565	ENSSLDG00000004623	si:ch73-63e15.2	100	77.197	Seriola_lalandi_dorsalis
ENSCVAG00000005663	si:ch73-63e15.2	88	82.396	ENSSPAG00000017717	si:ch73-63e15.2	100	78.710	Stegastes_partitus
ENSCVAG00000005663	si:ch73-63e15.2	77	68.515	ENSSSCG00000030042	SBNO2	90	68.515	Sus_scrofa
ENSCVAG00000005663	si:ch73-63e15.2	74	87.196	ENSTRUG00000018193	si:ch73-63e15.2	86	88.015	Takifugu_rubripes
ENSCVAG00000005663	si:ch73-63e15.2	70	70.094	ENSUAMG00000006568	SBNO2	91	74.461	Ursus_americanus
ENSCVAG00000005663	si:ch73-63e15.2	76	69.490	ENSVVUG00000022823	SBNO2	89	66.322	Vulpes_vulpes
ENSCVAG00000005663	si:ch73-63e15.2	69	76.566	ENSXETG00000021579	sbno2	90	76.566	Xenopus_tropicalis
ENSCVAG00000005663	si:ch73-63e15.2	88	89.800	ENSXCOG00000009209	si:ch73-63e15.2	94	91.731	Xiphophorus_couchianus
ENSCVAG00000005663	si:ch73-63e15.2	100	84.381	ENSXMAG00000012091	si:ch73-63e15.2	100	84.238	Xiphophorus_maculatus