EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000006167 (Gene tree)
Gene ID: 107090526
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 33242 bases
Position: chrKL652798.1:522287-555528
Accession: 107090526
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000004799	Upf2	PF04050.14	7.3e-33	1	1
ENSCVAP00000023024	Upf2	PF04050.14	7.3e-33	1	1
ENSCVAP00000023038	Upf2	PF04050.14	7.5e-33	1	1
ENSCVAP00000023041	Upf2	PF04050.14	7.8e-33	1	1
ENSCVAP00000023038	MIF4G	PF02854.19	9.4e-76	1	3
ENSCVAP00000023038	MIF4G	PF02854.19	9.4e-76	2	3
ENSCVAP00000023038	MIF4G	PF02854.19	9.4e-76	3	3
ENSCVAP00000023041	MIF4G	PF02854.19	9.9e-76	1	3
ENSCVAP00000023041	MIF4G	PF02854.19	9.9e-76	2	3
ENSCVAP00000023041	MIF4G	PF02854.19	9.9e-76	3	3
ENSCVAP00000004799	MIF4G	PF02854.19	1e-75	1	3
ENSCVAP00000004799	MIF4G	PF02854.19	1e-75	2	3
ENSCVAP00000004799	MIF4G	PF02854.19	1e-75	3	3
ENSCVAP00000023024	MIF4G	PF02854.19	1e-75	1	3
ENSCVAP00000023024	MIF4G	PF02854.19	1e-75	2	3
ENSCVAP00000023024	MIF4G	PF02854.19	1e-75	3	3
ENSCVAP00000023019	MIF4G	PF02854.19	1.1e-71	1	2
ENSCVAP00000023019	MIF4G	PF02854.19	1.1e-71	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000007781	UPF2-203	4131	-	ENSCVAP00000023041	1264 (aa)	-	-
ENSCVAT00000007761	UPF2-202	4250	-	ENSCVAP00000023038	1247 (aa)	-	-
ENSCVAT00000007738	UPF2-201	6843	-	ENSCVAP00000004799	1266 (aa)	-	UPI000742B41E
ENSCVAT00000007801	UPF2-204	5505	XM_015383942	ENSCVAP00000023024	1266 (aa)	XP_015239428	UPI000742B41E
ENSCVAT00000007823	UPF2-205	1743	-	ENSCVAP00000023019	580 (aa)	-	-

Gene Model

Click here to download ENSCVAG00000006167's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000006167's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000006167	UPF2	100	81.790	ENSG00000151461	UPF2	99	82.025	Homo_sapiens
ENSCVAG00000006167	UPF2	100	88.933	ENSAPOG00000015837	UPF2	99	88.574	Acanthochromis_polyacanthus
ENSCVAG00000006167	UPF2	100	82.455	ENSAMEG00000004586	UPF2	99	83.006	Ailuropoda_melanoleuca
ENSCVAG00000006167	UPF2	100	93.602	ENSACIG00000018078	UPF2	99	94.155	Amphilophus_citrinellus
ENSCVAG00000006167	UPF2	100	94.712	ENSAOCG00000016766	UPF2	99	94.791	Amphiprion_ocellaris
ENSCVAG00000006167	UPF2	100	94.791	ENSAPEG00000019084	UPF2	99	94.870	Amphiprion_percula
ENSCVAG00000006167	UPF2	100	93.849	ENSATEG00000021677	UPF2	99	94.401	Anabas_testudineus
ENSCVAG00000006167	UPF2	100	78.980	ENSAPLG00000010287	UPF2	90	83.162	Anas_platyrhynchos
ENSCVAG00000006167	UPF2	100	82.325	ENSACAG00000009259	UPF2	99	82.639	Anolis_carolinensis
ENSCVAG00000006167	UPF2	89	85.049	ENSANAG00000028451	UPF2	94	78.772	Aotus_nancymaae
ENSCVAG00000006167	UPF2	100	93.691	ENSACLG00000012696	UPF2	99	94.243	Astatotilapia_calliptera
ENSCVAG00000006167	UPF2	100	88.022	ENSAMXG00000013700	UPF2	98	88.346	Astyanax_mexicanus
ENSCVAG00000006167	UPF2	100	82.639	ENSBTAG00000000288	UPF2	99	83.111	Bos_taurus
ENSCVAG00000006167	UPF2	100	81.697	ENSCJAG00000020685	UPF2	99	81.304	Callithrix_jacchus
ENSCVAG00000006167	UPF2	100	82.482	ENSCAFG00000004839	UPF2	99	82.954	Canis_familiaris
ENSCVAG00000006167	UPF2	95	85.859	ENSCAFG00020005882	UPF2	97	83.813	Canis_lupus_dingo
ENSCVAG00000006167	UPF2	100	82.561	ENSCHIG00000020359	UPF2	99	83.032	Capra_hircus
ENSCVAG00000006167	UPF2	100	82.168	ENSTSYG00000000935	UPF2	96	85.955	Carlito_syrichta
ENSCVAG00000006167	UPF2	94	76.740	ENSCAPG00000016658	UPF2	95	74.172	Cavia_aperea
ENSCVAG00000006167	UPF2	100	79.291	ENSCPOG00000008809	UPF2	99	79.843	Cavia_porcellus
ENSCVAG00000006167	UPF2	100	75.491	ENSCCAG00000035991	UPF2	99	75.177	Cebus_capucinus
ENSCVAG00000006167	UPF2	100	81.947	ENSCATG00000032679	UPF2	99	82.182	Cercocebus_atys
ENSCVAG00000006167	UPF2	100	81.053	ENSCLAG00000011434	UPF2	99	81.525	Chinchilla_lanigera
ENSCVAG00000006167	UPF2	100	81.947	ENSCSAG00000013372	UPF2	99	82.182	Chlorocebus_sabaeus
ENSCVAG00000006167	UPF2	77	92.541	ENSCHOG00000000422	UPF2	84	89.333	Choloepus_hoffmanni
ENSCVAG00000006167	UPF2	100	80.378	ENSCPBG00000027823	UPF2	99	81.087	Chrysemys_picta_bellii
ENSCVAG00000006167	UPF2	98	53.368	ENSCSAVG00000007772	-	99	48.283	Ciona_savignyi
ENSCVAG00000006167	UPF2	100	76.833	ENSCANG00000040396	UPF2	99	77.376	Colobus_angolensis_palliatus
ENSCVAG00000006167	UPF2	100	81.840	ENSCGRG00001019347	Upf2	99	82.233	Cricetulus_griseus_chok1gshd
ENSCVAG00000006167	UPF2	100	81.840	ENSCGRG00000017993	Upf2	99	82.233	Cricetulus_griseus_crigri
ENSCVAG00000006167	UPF2	100	86.346	ENSCSEG00000003520	UPF2	99	85.354	Cynoglossus_semilaevis
ENSCVAG00000006167	UPF2	79	82.826	ENSDARG00000111388	CABZ01068469.1	95	83.512	Danio_rerio
ENSCVAG00000006167	UPF2	100	82.325	ENSDNOG00000018160	UPF2	99	82.875	Dasypus_novemcinctus
ENSCVAG00000006167	UPF2	100	81.854	ENSDORG00000002478	Upf2	99	82.168	Dipodomys_ordii
ENSCVAG00000006167	UPF2	90	36.104	FBgn0029992	Upf2	73	39.912	Drosophila_melanogaster
ENSCVAG00000006167	UPF2	73	94.118	ENSETEG00000011583	-	62	94.118	Echinops_telfairi
ENSCVAG00000006167	UPF2	65	70.861	ENSEBUG00000012448	-	93	68.161	Eptatretus_burgeri
ENSCVAG00000006167	UPF2	100	81.525	ENSEASG00005019274	UPF2	99	82.160	Equus_asinus_asinus
ENSCVAG00000006167	UPF2	100	81.525	ENSECAG00000017022	UPF2	99	81.997	Equus_caballus
ENSCVAG00000006167	UPF2	82	72.727	ENSEEUG00000007819	UPF2	70	84.500	Erinaceus_europaeus
ENSCVAG00000006167	UPF2	100	87.795	ENSELUG00000012014	UPF2	99	88.452	Esox_lucius
ENSCVAG00000006167	UPF2	100	84.699	ENSFCAG00000005785	UPF2	99	83.032	Felis_catus
ENSCVAG00000006167	UPF2	100	83.504	ENSFALG00000001889	UPF2	97	83.739	Ficedula_albicollis
ENSCVAG00000006167	UPF2	100	80.818	ENSFDAG00000014348	UPF2	99	81.132	Fukomys_damarensis
ENSCVAG00000006167	UPF2	100	97.235	ENSFHEG00000009826	UPF2	100	97.235	Fundulus_heteroclitus
ENSCVAG00000006167	UPF2	97	85.362	ENSGMOG00000005557	UPF2	99	85.377	Gadus_morhua
ENSCVAG00000006167	UPF2	100	83.281	ENSGALG00000033772	UPF2	99	83.320	Gallus_gallus
ENSCVAG00000006167	UPF2	100	95.893	ENSGAFG00000020867	UPF2	99	95.893	Gambusia_affinis
ENSCVAG00000006167	UPF2	100	91.260	ENSGACG00000001080	UPF2	99	91.811	Gasterosteus_aculeatus
ENSCVAG00000006167	UPF2	93	85.424	ENSGAGG00000002700	UPF2	92	84.394	Gopherus_agassizii
ENSCVAG00000006167	UPF2	100	81.790	ENSGGOG00000001479	UPF2	99	82.025	Gorilla_gorilla
ENSCVAG00000006167	UPF2	100	93.681	ENSHBUG00000004249	UPF2	99	94.234	Haplochromis_burtoni
ENSCVAG00000006167	UPF2	100	72.262	ENSHGLG00000003822	-	99	72.598	Heterocephalus_glaber_female
ENSCVAG00000006167	UPF2	100	80.818	ENSHGLG00000015176	-	99	81.289	Heterocephalus_glaber_female
ENSCVAG00000006167	UPF2	93	84.686	ENSHGLG00100010036	UPF2	99	76.283	Heterocephalus_glaber_male
ENSCVAG00000006167	UPF2	100	90.094	ENSHCOG00000004025	UPF2	99	89.929	Hippocampus_comes
ENSCVAG00000006167	UPF2	99	87.254	ENSIPUG00000015524	UPF2	99	87.018	Ictalurus_punctatus
ENSCVAG00000006167	UPF2	100	82.168	ENSSTOG00000013075	UPF2	99	82.561	Ictidomys_tridecemlineatus
ENSCVAG00000006167	UPF2	100	78.931	ENSJJAG00000004913	Upf2	99	81.540	Jaculus_jaculus
ENSCVAG00000006167	UPF2	100	93.297	ENSKMAG00000001071	UPF2	100	93.533	Kryptolebias_marmoratus
ENSCVAG00000006167	UPF2	100	92.666	ENSLBEG00000016394	-	98	92.981	Labrus_bergylta
ENSCVAG00000006167	UPF2	81	90.504	ENSLBEG00000000728	-	93	90.246	Labrus_bergylta
ENSCVAG00000006167	UPF2	98	76.929	ENSLACG00000015945	UPF2	99	76.701	Latimeria_chalumnae
ENSCVAG00000006167	UPF2	100	86.929	ENSLOCG00000015698	UPF2	100	86.939	Lepisosteus_oculatus
ENSCVAG00000006167	UPF2	100	81.947	ENSMFAG00000043865	UPF2	99	82.182	Macaca_fascicularis
ENSCVAG00000006167	UPF2	100	81.947	ENSMMUG00000008241	UPF2	99	82.182	Macaca_mulatta
ENSCVAG00000006167	UPF2	81	82.874	ENSMNEG00000008062	UPF2	99	82.480	Macaca_nemestrina
ENSCVAG00000006167	UPF2	100	79.969	ENSMLEG00000036120	UPF2	99	80.110	Mandrillus_leucophaeus
ENSCVAG00000006167	UPF2	100	91.719	ENSMAMG00000018276	UPF2	99	92.271	Mastacembelus_armatus
ENSCVAG00000006167	UPF2	100	93.691	ENSMZEG00005021595	UPF2	99	94.243	Maylandia_zebra
ENSCVAG00000006167	UPF2	99	82.859	ENSMGAG00000004573	UPF2	99	82.900	Meleagris_gallopavo
ENSCVAG00000006167	UPF2	100	79.796	ENSMAUG00000016512	Upf2	99	80.189	Mesocricetus_auratus
ENSCVAG00000006167	UPF2	95	85.354	ENSMICG00000001716	UPF2	99	86.364	Microcebus_murinus
ENSCVAG00000006167	UPF2	100	80.960	ENSMOCG00000008263	Upf2	99	81.275	Microtus_ochrogaster
ENSCVAG00000006167	UPF2	100	89.723	ENSMMOG00000006528	UPF2	99	89.091	Mola_mola
ENSCVAG00000006167	UPF2	100	80.676	ENSMODG00000016794	UPF2	99	83.189	Monodelphis_domestica
ENSCVAG00000006167	UPF2	100	92.016	ENSMALG00000002663	UPF2	99	92.095	Monopterus_albus
ENSCVAG00000006167	UPF2	100	81.604	MGP_CAROLIEiJ_G0023157	Upf2	99	84.361	Mus_caroli
ENSCVAG00000006167	UPF2	100	81.997	ENSMUSG00000043241	Upf2	99	83.051	Mus_musculus
ENSCVAG00000006167	UPF2	100	81.997	MGP_PahariEiJ_G0019217	Upf2	100	82.863	Mus_pahari
ENSCVAG00000006167	UPF2	100	82.154	MGP_SPRETEiJ_G0024075	Upf2	100	83.051	Mus_spretus
ENSCVAG00000006167	UPF2	100	82.325	ENSMPUG00000001064	UPF2	99	82.875	Mustela_putorius_furo
ENSCVAG00000006167	UPF2	100	81.461	ENSMLUG00000000228	UPF2	99	82.039	Myotis_lucifugus
ENSCVAG00000006167	UPF2	100	93.691	ENSNBRG00000013629	UPF2	99	94.243	Neolamprologus_brichardi
ENSCVAG00000006167	UPF2	100	81.868	ENSNLEG00000012058	UPF2	99	82.104	Nomascus_leucogenys
ENSCVAG00000006167	UPF2	73	94.366	ENSOPRG00000006801	-	73	94.366	Ochotona_princeps
ENSCVAG00000006167	UPF2	100	81.020	ENSODEG00000001290	UPF2	99	81.412	Octodon_degus
ENSCVAG00000006167	UPF2	100	93.375	ENSONIG00000017991	UPF2	99	93.927	Oreochromis_niloticus
ENSCVAG00000006167	UPF2	75	89.401	ENSOANG00000019744	-	92	87.021	Ornithorhynchus_anatinus
ENSCVAG00000006167	UPF2	100	80.094	ENSOCUG00000006230	UPF2	99	80.799	Oryctolagus_cuniculus
ENSCVAG00000006167	UPF2	100	91.483	ENSORLG00000017189	UPF2	99	91.798	Oryzias_latipes
ENSCVAG00000006167	UPF2	100	91.562	ENSORLG00020005969	UPF2	99	91.877	Oryzias_latipes_hni
ENSCVAG00000006167	UPF2	100	91.562	ENSORLG00015005713	UPF2	99	91.877	Oryzias_latipes_hsok
ENSCVAG00000006167	UPF2	100	87.984	ENSOMEG00000023420	UPF2	97	88.142	Oryzias_melastigma
ENSCVAG00000006167	UPF2	100	82.482	ENSOGAG00000005796	UPF2	99	82.325	Otolemur_garnettii
ENSCVAG00000006167	UPF2	100	82.431	ENSOARG00000014587	UPF2	99	82.902	Ovis_aries
ENSCVAG00000006167	UPF2	100	79.340	ENSPPAG00000037953	UPF2	99	79.481	Pan_paniscus
ENSCVAG00000006167	UPF2	100	82.482	ENSPPRG00000000690	UPF2	99	83.032	Panthera_pardus
ENSCVAG00000006167	UPF2	100	82.482	ENSPTIG00000008867	UPF2	99	83.032	Panthera_tigris_altaica
ENSCVAG00000006167	UPF2	100	81.790	ENSPTRG00000002291	UPF2	99	82.025	Pan_troglodytes
ENSCVAG00000006167	UPF2	100	81.947	ENSPANG00000023399	UPF2	99	82.182	Papio_anubis
ENSCVAG00000006167	UPF2	100	86.772	ENSPKIG00000025502	UPF2	99	85.523	Paramormyrops_kingsleyae
ENSCVAG00000006167	UPF2	51	85.891	ENSPSIG00000015158	UPF2	83	85.191	Pelodiscus_sinensis
ENSCVAG00000006167	UPF2	100	88.687	ENSPMGG00000005259	UPF2	99	88.766	Periophthalmus_magnuspinnatus
ENSCVAG00000006167	UPF2	93	75.964	ENSPEMG00000015731	Upf2	99	75.964	Peromyscus_maniculatus_bairdii
ENSCVAG00000006167	UPF2	100	82.524	ENSPCIG00000006656	UPF2	99	82.915	Phascolarctos_cinereus
ENSCVAG00000006167	UPF2	100	96.524	ENSPFOG00000017118	UPF2	99	96.524	Poecilia_formosa
ENSCVAG00000006167	UPF2	100	96.603	ENSPLAG00000005094	UPF2	99	96.603	Poecilia_latipinna
ENSCVAG00000006167	UPF2	100	96.524	ENSPMEG00000017009	UPF2	99	96.524	Poecilia_mexicana
ENSCVAG00000006167	UPF2	100	94.699	ENSPREG00000021880	UPF2	99	95.016	Poecilia_reticulata
ENSCVAG00000006167	UPF2	93	85.240	ENSPPYG00000002089	-	100	84.834	Pongo_abelii
ENSCVAG00000006167	UPF2	86	74.932	ENSPCAG00000000684	UPF2	98	70.556	Procavia_capensis
ENSCVAG00000006167	UPF2	100	79.386	ENSPCOG00000021656	UPF2	99	80.016	Propithecus_coquereli
ENSCVAG00000006167	UPF2	100	75.824	ENSPVAG00000017286	UPF2	99	76.295	Pteropus_vampyrus
ENSCVAG00000006167	UPF2	100	91.074	ENSPNYG00000017096	UPF2	99	91.627	Pundamilia_nyererei
ENSCVAG00000006167	UPF2	100	87.962	ENSPNAG00000009357	UPF2	99	88.286	Pygocentrus_nattereri
ENSCVAG00000006167	UPF2	100	77.648	ENSRNOG00000023593	Upf2	100	93.333	Rattus_norvegicus
ENSCVAG00000006167	UPF2	100	80.724	ENSRBIG00000037780	UPF2	99	80.881	Rhinopithecus_bieti
ENSCVAG00000006167	UPF2	100	81.711	ENSRROG00000043547	UPF2	99	81.868	Rhinopithecus_roxellana
ENSCVAG00000006167	UPF2	100	81.618	ENSSBOG00000020012	UPF2	99	81.147	Saimiri_boliviensis_boliviensis
ENSCVAG00000006167	UPF2	100	85.928	ENSSFOG00015023788	upf2	99	85.894	Scleropages_formosus
ENSCVAG00000006167	UPF2	93	93.002	ENSSMAG00000007637	UPF2	99	90.368	Scophthalmus_maximus
ENSCVAG00000006167	UPF2	100	94.475	ENSSDUG00000017244	UPF2	98	94.554	Seriola_dumerili
ENSCVAG00000006167	UPF2	100	89.723	ENSSLDG00000016866	UPF2	99	90.751	Seriola_lalandi_dorsalis
ENSCVAG00000006167	UPF2	100	81.275	ENSSARG00000008615	UPF2	99	81.932	Sorex_araneus
ENSCVAG00000006167	UPF2	94	86.264	ENSSPUG00000014544	UPF2	98	80.157	Sphenodon_punctatus
ENSCVAG00000006167	UPF2	93	85.240	ENSSSCG00000011117	-	99	84.817	Sus_scrofa
ENSCVAG00000006167	UPF2	59	82.941	ENSTGUG00000015714	-	100	82.663	Taeniopygia_guttata
ENSCVAG00000006167	UPF2	99	83.386	ENSTGUG00000002163	-	99	83.622	Taeniopygia_guttata
ENSCVAG00000006167	UPF2	100	91.325	ENSTRUG00000007519	UPF2	98	91.798	Takifugu_rubripes
ENSCVAG00000006167	UPF2	100	88.110	ENSTNIG00000004453	UPF2	99	88.583	Tetraodon_nigroviridis
ENSCVAG00000006167	UPF2	94	72.420	ENSTBEG00000012679	UPF2	92	74.450	Tupaia_belangeri
ENSCVAG00000006167	UPF2	100	81.211	ENSTTRG00000016388	UPF2	99	81.604	Tursiops_truncatus
ENSCVAG00000006167	UPF2	87	93.258	ENSUAMG00000023560	UPF2	97	93.258	Ursus_americanus
ENSCVAG00000006167	UPF2	100	82.404	ENSUMAG00000012953	UPF2	94	82.954	Ursus_maritimus
ENSCVAG00000006167	UPF2	82	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSCVAG00000006167	UPF2	100	82.404	ENSVVUG00000006166	UPF2	99	82.875	Vulpes_vulpes
ENSCVAG00000006167	UPF2	93	84.954	ENSXETG00000033103	UPF2	91	83.477	Xenopus_tropicalis
ENSCVAG00000006167	UPF2	100	95.965	ENSXCOG00000011604	UPF2	99	95.965	Xiphophorus_couchianus
ENSCVAG00000006167	UPF2	100	96.130	ENSXMAG00000017209	UPF2	99	96.130	Xiphophorus_maculatus