EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000007038 (Gene tree)
Gene ID: 107086076
Gene Symbol: sbno1
Alias: -
Full Name: strawberry notch homolog 1
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 28259 bases
Position: chrKL652642.1:299686-327944
Accession: 107086076
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000005538	ResIII	PF04851.15	9.2e-08	1	1
ENSCVAP00000005568	ResIII	PF04851.15	1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000006470	-	6032	XM_015376819	ENSCVAP00000005568	1404 (aa)	XP_015232305	UPI0007429483
ENSCVAT00000006513	-	4029	-	ENSCVAP00000005538	1342 (aa)	-	-

Gene Model

Click here to download ENSCVAG00000007038's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000007038's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000007038	sbno1	73	65.596	ENSCVAG00000005663	si:ch73-63e15.2	65	64.853

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000007038	sbno1	99	75.664	ENSG00000139697	SBNO1	99	75.404	Homo_sapiens
ENSCVAG00000007038	sbno1	82	93.739	ENSAPOG00000003196	sbno1	98	93.565	Acanthochromis_polyacanthus
ENSCVAG00000007038	sbno1	99	76.064	ENSAMEG00000015151	SBNO1	99	75.666	Ailuropoda_melanoleuca
ENSCVAG00000007038	sbno1	100	86.107	ENSACIG00000008088	sbno1	99	86.248	Amphilophus_citrinellus
ENSCVAG00000007038	sbno1	100	90.263	ENSAOCG00000014859	sbno1	99	90.476	Amphiprion_ocellaris
ENSCVAG00000007038	sbno1	100	90.192	ENSAPEG00000006069	sbno1	99	90.405	Amphiprion_percula
ENSCVAG00000007038	sbno1	100	91.187	ENSATEG00000006667	sbno1	100	90.974	Anabas_testudineus
ENSCVAG00000007038	sbno1	98	75.917	ENSAPLG00000015674	SBNO1	99	75.653	Anas_platyrhynchos
ENSCVAG00000007038	sbno1	98	75.129	ENSACAG00000015441	SBNO1	88	74.873	Anolis_carolinensis
ENSCVAG00000007038	sbno1	95	83.666	ENSANAG00000029958	-	99	83.154	Aotus_nancymaae
ENSCVAG00000007038	sbno1	100	84.555	ENSACLG00000024913	sbno1	100	85.015	Astatotilapia_calliptera
ENSCVAG00000007038	sbno1	100	81.502	ENSAMXG00000019473	sbno1	100	81.715	Astyanax_mexicanus
ENSCVAG00000007038	sbno1	100	76.101	ENSBTAG00000020505	SBNO1	99	75.772	Bos_taurus
ENSCVAG00000007038	sbno1	99	76.037	ENSCJAG00000016599	SBNO1	99	75.474	Callithrix_jacchus
ENSCVAG00000007038	sbno1	99	75.978	ENSCAFG00000007503	SBNO1	97	84.722	Canis_familiaris
ENSCVAG00000007038	sbno1	97	80.790	ENSCAFG00020015363	SBNO1	99	80.969	Canis_lupus_dingo
ENSCVAG00000007038	sbno1	95	83.154	ENSCHIG00000008382	SBNO1	99	83.154	Capra_hircus
ENSCVAG00000007038	sbno1	99	75.965	ENSTSYG00000012749	SBNO1	99	77.117	Carlito_syrichta
ENSCVAG00000007038	sbno1	91	83.303	ENSCAPG00000000384	SBNO1	99	83.303	Cavia_aperea
ENSCVAG00000007038	sbno1	95	83.303	ENSCPOG00000008109	SBNO1	99	83.303	Cavia_porcellus
ENSCVAG00000007038	sbno1	99	71.680	ENSCCAG00000035316	SBNO1	99	72.043	Cebus_capucinus
ENSCVAG00000007038	sbno1	91	83.483	ENSCATG00000008239	SBNO1	99	83.483	Cercocebus_atys
ENSCVAG00000007038	sbno1	95	83.303	ENSCLAG00000008995	SBNO1	99	83.303	Chinchilla_lanigera
ENSCVAG00000007038	sbno1	85	80.500	ENSCSAG00000002064	SBNO1	99	81.481	Chlorocebus_sabaeus
ENSCVAG00000007038	sbno1	96	73.346	ENSCHOG00000008814	SBNO1	96	72.770	Choloepus_hoffmanni
ENSCVAG00000007038	sbno1	98	75.782	ENSCPBG00000025968	SBNO1	99	75.194	Chrysemys_picta_bellii
ENSCVAG00000007038	sbno1	99	72.320	ENSCANG00000042688	-	99	71.972	Colobus_angolensis_palliatus
ENSCVAG00000007038	sbno1	95	82.079	ENSCGRG00001017470	Sbno1	99	82.079	Cricetulus_griseus_chok1gshd
ENSCVAG00000007038	sbno1	95	82.079	ENSCGRG00000004756	Sbno1	99	82.079	Cricetulus_griseus_crigri
ENSCVAG00000007038	sbno1	100	87.775	ENSCSEG00000011919	sbno1	100	87.562	Cynoglossus_semilaevis
ENSCVAG00000007038	sbno1	99	81.495	ENSDARG00000099080	sbno1	99	81.779	Danio_rerio
ENSCVAG00000007038	sbno1	99	78.327	ENSDNOG00000017147	SBNO1	96	78.327	Dasypus_novemcinctus
ENSCVAG00000007038	sbno1	95	80.714	ENSDORG00000015261	Sbno1	99	80.234	Dipodomys_ordii
ENSCVAG00000007038	sbno1	93	72.327	ENSETEG00000005620	SBNO1	93	72.327	Echinops_telfairi
ENSCVAG00000007038	sbno1	74	63.689	ENSEBUG00000013823	sbno1	93	62.633	Eptatretus_burgeri
ENSCVAG00000007038	sbno1	50	76.197	ENSEASG00005012595	-	92	76.633	Equus_asinus_asinus
ENSCVAG00000007038	sbno1	99	76.014	ENSECAG00000006127	SBNO1	99	76.360	Equus_caballus
ENSCVAG00000007038	sbno1	81	76.949	ENSEEUG00000003793	SBNO1	82	76.503	Erinaceus_europaeus
ENSCVAG00000007038	sbno1	100	83.003	ENSELUG00000002886	sbno1	99	82.790	Esox_lucius
ENSCVAG00000007038	sbno1	99	76.154	ENSFCAG00000015331	SBNO1	99	75.755	Felis_catus
ENSCVAG00000007038	sbno1	98	76.132	ENSFALG00000009273	SBNO1	99	75.723	Ficedula_albicollis
ENSCVAG00000007038	sbno1	95	80.797	ENSFDAG00000014232	SBNO1	99	80.251	Fukomys_damarensis
ENSCVAG00000007038	sbno1	100	95.513	ENSFHEG00000007360	sbno1	100	95.513	Fundulus_heteroclitus
ENSCVAG00000007038	sbno1	97	82.824	ENSGMOG00000018229	sbno1	99	85.188	Gadus_morhua
ENSCVAG00000007038	sbno1	88	76.077	ENSGALG00000003392	SBNO1	99	75.837	Gallus_gallus
ENSCVAG00000007038	sbno1	100	95.085	ENSGAFG00000003960	sbno1	100	95.085	Gambusia_affinis
ENSCVAG00000007038	sbno1	94	87.913	ENSGACG00000015633	sbno1	99	87.838	Gasterosteus_aculeatus
ENSCVAG00000007038	sbno1	96	83.333	ENSGAGG00000001065	SBNO1	99	83.513	Gopherus_agassizii
ENSCVAG00000007038	sbno1	95	83.303	ENSGGOG00000015000	SBNO1	99	83.303	Gorilla_gorilla
ENSCVAG00000007038	sbno1	100	78.551	ENSHBUG00000011910	sbno1	100	78.906	Haplochromis_burtoni
ENSCVAG00000007038	sbno1	95	84.029	ENSHGLG00000014165	-	99	83.633	Heterocephalus_glaber_female
ENSCVAG00000007038	sbno1	92	91.683	ENSHCOG00000003246	sbno1	95	91.683	Hippocampus_comes
ENSCVAG00000007038	sbno1	100	81.657	ENSIPUG00000015830	Sbno1	98	82.320	Ictalurus_punctatus
ENSCVAG00000007038	sbno1	95	83.303	ENSSTOG00000023221	SBNO1	99	83.303	Ictidomys_tridecemlineatus
ENSCVAG00000007038	sbno1	99	75.857	ENSJJAG00000001741	Sbno1	99	79.533	Jaculus_jaculus
ENSCVAG00000007038	sbno1	99	92.505	ENSKMAG00000009696	sbno1	99	92.577	Kryptolebias_marmoratus
ENSCVAG00000007038	sbno1	100	88.298	ENSLBEG00000007623	sbno1	100	88.369	Labrus_bergylta
ENSCVAG00000007038	sbno1	100	72.433	ENSLACG00000017227	SBNO1	99	74.722	Latimeria_chalumnae
ENSCVAG00000007038	sbno1	100	80.929	ENSLOCG00000005725	sbno1	97	80.577	Lepisosteus_oculatus
ENSCVAG00000007038	sbno1	99	75.524	ENSLAFG00000002135	SBNO1	99	75.264	Loxodonta_africana
ENSCVAG00000007038	sbno1	95	80.107	ENSMFAG00000031429	SBNO1	99	80.107	Macaca_fascicularis
ENSCVAG00000007038	sbno1	95	80.107	ENSMMUG00000011496	SBNO1	99	80.107	Macaca_mulatta
ENSCVAG00000007038	sbno1	95	83.303	ENSMLEG00000033260	SBNO1	99	83.303	Mandrillus_leucophaeus
ENSCVAG00000007038	sbno1	100	90.812	ENSMAMG00000005473	sbno1	100	90.812	Mastacembelus_armatus
ENSCVAG00000007038	sbno1	98	76.314	ENSMGAG00000003274	SBNO1	99	75.901	Meleagris_gallopavo
ENSCVAG00000007038	sbno1	51	72.727	ENSMAUG00000004834	-	99	77.185	Mesocricetus_auratus
ENSCVAG00000007038	sbno1	95	80.762	ENSMICG00000006573	-	99	80.287	Microcebus_murinus
ENSCVAG00000007038	sbno1	95	82.796	ENSMOCG00000009390	Sbno1	99	82.796	Microtus_ochrogaster
ENSCVAG00000007038	sbno1	100	83.210	ENSMMOG00000008691	sbno1	99	83.222	Mola_mola
ENSCVAG00000007038	sbno1	99	75.105	ENSMODG00000012470	SBNO1	98	75.353	Monodelphis_domestica
ENSCVAG00000007038	sbno1	100	89.837	ENSMALG00000001056	sbno1	100	89.765	Monopterus_albus
ENSCVAG00000007038	sbno1	99	75.828	MGP_CAROLIEiJ_G0027749	Sbno1	95	91.228	Mus_caroli
ENSCVAG00000007038	sbno1	99	75.806	ENSMUSG00000038095	Sbno1	94	91.228	Mus_musculus
ENSCVAG00000007038	sbno1	99	76.288	MGP_PahariEiJ_G0024329	Sbno1	95	91.228	Mus_pahari
ENSCVAG00000007038	sbno1	99	75.736	MGP_SPRETEiJ_G0028747	Sbno1	95	91.228	Mus_spretus
ENSCVAG00000007038	sbno1	99	76.137	ENSMPUG00000001658	SBNO1	99	75.738	Mustela_putorius_furo
ENSCVAG00000007038	sbno1	99	75.966	ENSMLUG00000017159	SBNO1	99	75.404	Myotis_lucifugus
ENSCVAG00000007038	sbno1	92	84.180	ENSNGAG00000012620	Sbno1	98	84.180	Nannospalax_galili
ENSCVAG00000007038	sbno1	100	85.237	ENSNBRG00000019189	sbno1	100	85.725	Neolamprologus_brichardi
ENSCVAG00000007038	sbno1	99	73.105	ENSNLEG00000001502	SBNO1	99	75.583	Nomascus_leucogenys
ENSCVAG00000007038	sbno1	62	74.051	ENSMEUG00000008768	-	93	75.949	Notamacropus_eugenii
ENSCVAG00000007038	sbno1	99	74.877	ENSOPRG00000011054	SBNO1	99	74.614	Ochotona_princeps
ENSCVAG00000007038	sbno1	95	83.483	ENSODEG00000009997	SBNO1	99	83.483	Octodon_degus
ENSCVAG00000007038	sbno1	100	89.694	ENSONIG00000015348	sbno1	100	89.908	Oreochromis_niloticus
ENSCVAG00000007038	sbno1	98	75.178	ENSOCUG00000002441	SBNO1	95	74.696	Oryctolagus_cuniculus
ENSCVAG00000007038	sbno1	100	89.631	ENSORLG00000001593	sbno1	100	89.276	Oryzias_latipes
ENSCVAG00000007038	sbno1	100	89.908	ENSORLG00020015216	sbno1	100	89.623	Oryzias_latipes_hni
ENSCVAG00000007038	sbno1	100	89.694	ENSORLG00015002726	sbno1	100	89.410	Oryzias_latipes_hsok
ENSCVAG00000007038	sbno1	100	89.047	ENSOMEG00000019313	sbno1	100	88.976	Oryzias_melastigma
ENSCVAG00000007038	sbno1	51	71.788	ENSOGAG00000010781	-	99	75.628	Otolemur_garnettii
ENSCVAG00000007038	sbno1	100	75.613	ENSOARG00000004404	SBNO1	99	75.457	Ovis_aries
ENSCVAG00000007038	sbno1	95	83.303	ENSPPAG00000024635	SBNO1	99	83.303	Pan_paniscus
ENSCVAG00000007038	sbno1	99	76.154	ENSPPRG00000022092	SBNO1	99	75.755	Panthera_pardus
ENSCVAG00000007038	sbno1	99	76.174	ENSPTIG00000017803	SBNO1	99	75.775	Panthera_tigris_altaica
ENSCVAG00000007038	sbno1	95	83.303	ENSPTRG00000005597	SBNO1	99	83.303	Pan_troglodytes
ENSCVAG00000007038	sbno1	95	83.303	ENSPANG00000011640	SBNO1	99	83.303	Papio_anubis
ENSCVAG00000007038	sbno1	100	80.862	ENSPKIG00000001441	sbno1	100	80.579	Paramormyrops_kingsleyae
ENSCVAG00000007038	sbno1	92	72.464	ENSPSIG00000009256	-	99	72.311	Pelodiscus_sinensis
ENSCVAG00000007038	sbno1	98	75.913	ENSPSIG00000009572	-	99	75.658	Pelodiscus_sinensis
ENSCVAG00000007038	sbno1	95	82.616	ENSPEMG00000016087	Sbno1	99	82.616	Peromyscus_maniculatus_bairdii
ENSCVAG00000007038	sbno1	99	75.282	ENSPCIG00000010985	SBNO1	99	75.371	Phascolarctos_cinereus
ENSCVAG00000007038	sbno1	100	95.445	ENSPFOG00000005069	sbno1	100	95.658	Poecilia_formosa
ENSCVAG00000007038	sbno1	100	95.374	ENSPLAG00000015015	sbno1	100	95.587	Poecilia_latipinna
ENSCVAG00000007038	sbno1	100	95.448	ENSPMEG00000021212	sbno1	100	95.661	Poecilia_mexicana
ENSCVAG00000007038	sbno1	100	94.950	ENSPREG00000017746	sbno1	100	95.164	Poecilia_reticulata
ENSCVAG00000007038	sbno1	99	75.439	ENSPPYG00000005084	SBNO1	99	75.458	Pongo_abelii
ENSCVAG00000007038	sbno1	89	69.038	ENSPCAG00000008634	SBNO1	88	68.692	Procavia_capensis
ENSCVAG00000007038	sbno1	95	83.607	ENSPCOG00000024277	SBNO1	99	83.607	Propithecus_coquereli
ENSCVAG00000007038	sbno1	87	83.698	ENSPVAG00000015304	SBNO1	87	83.698	Pteropus_vampyrus
ENSCVAG00000007038	sbno1	100	89.552	ENSPNYG00000004291	sbno1	100	89.908	Pundamilia_nyererei
ENSCVAG00000007038	sbno1	100	81.799	ENSPNAG00000015622	sbno1	100	81.374	Pygocentrus_nattereri
ENSCVAG00000007038	sbno1	95	82.796	ENSRNOG00000001064	Sbno1	99	82.944	Rattus_norvegicus
ENSCVAG00000007038	sbno1	95	83.303	ENSRROG00000034230	SBNO1	99	83.303	Rhinopithecus_roxellana
ENSCVAG00000007038	sbno1	97	73.980	ENSSBOG00000015422	SBNO1	99	72.959	Saimiri_boliviensis_boliviensis
ENSCVAG00000007038	sbno1	100	81.581	ENSSFOG00015019025	sbno1	100	81.369	Scleropages_formosus
ENSCVAG00000007038	sbno1	100	90.107	ENSSMAG00000013640	sbno1	100	90.249	Scophthalmus_maximus
ENSCVAG00000007038	sbno1	100	91.756	ENSSDUG00000023480	sbno1	100	91.684	Seriola_dumerili
ENSCVAG00000007038	sbno1	100	91.613	ENSSLDG00000007928	sbno1	100	91.542	Seriola_lalandi_dorsalis
ENSCVAG00000007038	sbno1	89	81.583	ENSSARG00000002594	SBNO1	89	80.937	Sorex_araneus
ENSCVAG00000007038	sbno1	98	75.967	ENSSPUG00000012640	SBNO1	99	75.547	Sphenodon_punctatus
ENSCVAG00000007038	sbno1	100	91.471	ENSSPAG00000016244	sbno1	100	91.684	Stegastes_partitus
ENSCVAG00000007038	sbno1	99	75.857	ENSSSCG00000009776	SBNO1	99	75.619	Sus_scrofa
ENSCVAG00000007038	sbno1	98	75.899	ENSTGUG00000005380	SBNO1	99	75.494	Taeniopygia_guttata
ENSCVAG00000007038	sbno1	99	86.752	ENSTRUG00000018490	sbno1	99	87.402	Takifugu_rubripes
ENSCVAG00000007038	sbno1	57	83.935	ENSTNIG00000013506	sbno1	99	83.835	Tetraodon_nigroviridis
ENSCVAG00000007038	sbno1	99	76.154	ENSUAMG00000019671	SBNO1	99	75.755	Ursus_americanus
ENSCVAG00000007038	sbno1	99	76.154	ENSUMAG00000004002	SBNO1	99	75.755	Ursus_maritimus
ENSCVAG00000007038	sbno1	95	73.333	ENSVPAG00000007024	SBNO1	95	73.333	Vicugna_pacos
ENSCVAG00000007038	sbno1	99	76.084	ENSVVUG00000027807	SBNO1	99	75.685	Vulpes_vulpes
ENSCVAG00000007038	sbno1	99	72.440	ENSXETG00000031930	SBNO1	99	72.082	Xenopus_tropicalis
ENSCVAG00000007038	sbno1	89	91.033	ENSXCOG00000011607	sbno1	99	90.877	Xiphophorus_couchianus
ENSCVAG00000007038	sbno1	100	95.021	ENSXMAG00000002140	sbno1	100	95.235	Xiphophorus_maculatus