EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000007043 (Gene tree)
Gene ID: 107083277
Gene Symbol: pum1
Alias: fb96a03|si:ch211-285e16.1|wu:fb96a03|wu:fb96a08|zgc:63671
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 39063 bases
Position: chrKL652571.1:803065-842127
Accession: 107083277
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000023582	PUF	PF00806.19	2.1e-69	1	8
ENSCVAP00000023582	PUF	PF00806.19	2.1e-69	2	8
ENSCVAP00000023582	PUF	PF00806.19	2.1e-69	3	8
ENSCVAP00000023582	PUF	PF00806.19	2.1e-69	4	8
ENSCVAP00000023582	PUF	PF00806.19	2.1e-69	5	8
ENSCVAP00000023582	PUF	PF00806.19	2.1e-69	6	8
ENSCVAP00000023582	PUF	PF00806.19	2.1e-69	7	8
ENSCVAP00000023582	PUF	PF00806.19	2.1e-69	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000006401	-	5185	XM_015372368	ENSCVAP00000023582	1163 (aa)	XP_015227854	UPI000742931B

Gene Model

Click here to download ENSCVAG00000007043's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000007043's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000007043	pum1	95	65.290	ENSCVAG00000002426	pum2	94	62.864

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000007043	pum1	100	75.785	ENSG00000134644	PUM1	100	80.817	Homo_sapiens
ENSCVAG00000007043	pum1	100	97.850	ENSAPOG00000021632	pum1	100	98.072	Acanthochromis_polyacanthus
ENSCVAG00000007043	pum1	100	75.825	ENSAMEG00000017656	PUM1	97	73.967	Ailuropoda_melanoleuca
ENSCVAG00000007043	pum1	100	97.077	ENSACIG00000021013	pum1	100	97.077	Amphilophus_citrinellus
ENSCVAG00000007043	pum1	100	97.850	ENSAOCG00000003944	pum1	100	98.072	Amphiprion_ocellaris
ENSCVAG00000007043	pum1	100	97.850	ENSAPEG00000014550	pum1	100	98.072	Amphiprion_percula
ENSCVAG00000007043	pum1	100	97.420	ENSATEG00000016004	pum1	100	98.072	Anabas_testudineus
ENSCVAG00000007043	pum1	100	76.383	ENSAPLG00000009351	PUM1	100	74.359	Anas_platyrhynchos
ENSCVAG00000007043	pum1	100	75.993	ENSACAG00000000682	PUM1	98	75.745	Anolis_carolinensis
ENSCVAG00000007043	pum1	100	75.557	ENSANAG00000027865	PUM1	100	80.693	Aotus_nancymaae
ENSCVAG00000007043	pum1	92	97.746	ENSACLG00000019354	pum1	100	97.746	Astatotilapia_calliptera
ENSCVAG00000007043	pum1	100	81.441	ENSAMXG00000020607	pum1	96	81.441	Astyanax_mexicanus
ENSCVAG00000007043	pum1	100	75.785	ENSBTAG00000018979	PUM1	100	80.964	Bos_taurus
ENSCVAG00000007043	pum1	100	75.888	ENSCJAG00000006035	PUM1	100	80.817	Callithrix_jacchus
ENSCVAG00000007043	pum1	93	77.838	ENSCAFG00020024616	PUM1	98	80.941	Canis_lupus_dingo
ENSCVAG00000007043	pum1	100	75.785	ENSCHIG00000012952	PUM1	100	75.783	Capra_hircus
ENSCVAG00000007043	pum1	100	75.640	ENSTSYG00000008868	PUM1	100	80.817	Carlito_syrichta
ENSCVAG00000007043	pum1	100	75.475	ENSCPOG00000031613	PUM1	100	80.569	Cavia_porcellus
ENSCVAG00000007043	pum1	94	90.843	ENSCATG00000017991	PUM1	93	91.325	Cercocebus_atys
ENSCVAG00000007043	pum1	100	75.475	ENSCLAG00000007662	PUM1	100	80.569	Chinchilla_lanigera
ENSCVAG00000007043	pum1	100	74.714	ENSCSAG00000001028	PUM1	100	72.869	Chlorocebus_sabaeus
ENSCVAG00000007043	pum1	93	65.120	ENSCHOG00000010245	PUM1	93	65.459	Choloepus_hoffmanni
ENSCVAG00000007043	pum1	100	76.033	ENSCPBG00000009288	PUM1	100	81.188	Chrysemys_picta_bellii
ENSCVAG00000007043	pum1	100	75.785	ENSCANG00000042606	PUM1	100	80.817	Colobus_angolensis_palliatus
ENSCVAG00000007043	pum1	100	74.855	ENSCGRG00001024949	Pum1	100	82.447	Cricetulus_griseus_chok1gshd
ENSCVAG00000007043	pum1	100	74.855	ENSCGRG00000014197	Pum1	100	82.447	Cricetulus_griseus_crigri
ENSCVAG00000007043	pum1	92	95.876	ENSCSEG00000015981	pum1	100	95.876	Cynoglossus_semilaevis
ENSCVAG00000007043	pum1	100	83.065	ENSDARG00000099256	pum1	100	80.508	Danio_rerio
ENSCVAG00000007043	pum1	100	76.053	ENSDNOG00000010939	PUM1	100	74.276	Dasypus_novemcinctus
ENSCVAG00000007043	pum1	90	72.238	ENSETEG00000004355	PUM1	87	70.645	Echinops_telfairi
ENSCVAG00000007043	pum1	100	75.950	ENSEASG00005010813	PUM1	100	74.007	Equus_asinus_asinus
ENSCVAG00000007043	pum1	100	75.805	ENSECAG00000021369	PUM1	100	73.863	Equus_caballus
ENSCVAG00000007043	pum1	76	89.800	ENSEEUG00000003871	PUM1	74	90.244	Erinaceus_europaeus
ENSCVAG00000007043	pum1	100	88.396	ENSELUG00000002409	pum1	100	92.373	Esox_lucius
ENSCVAG00000007043	pum1	100	75.805	ENSFCAG00000010374	PUM1	100	80.941	Felis_catus
ENSCVAG00000007043	pum1	100	76.316	ENSFALG00000001214	PUM1	97	74.465	Ficedula_albicollis
ENSCVAG00000007043	pum1	100	75.475	ENSFDAG00000011319	PUM1	100	80.569	Fukomys_damarensis
ENSCVAG00000007043	pum1	100	90.102	ENSGMOG00000010491	pum1	100	90.273	Gadus_morhua
ENSCVAG00000007043	pum1	96	89.940	ENSGALG00000042598	PUM1	99	89.940	Gallus_gallus
ENSCVAG00000007043	pum1	100	98.280	ENSGAFG00000015617	pum1	100	99.036	Gambusia_affinis
ENSCVAG00000007043	pum1	99	96.207	ENSGACG00000005717	pum1	100	96.207	Gasterosteus_aculeatus
ENSCVAG00000007043	pum1	96	90.141	ENSGAGG00000001290	PUM1	99	90.141	Gopherus_agassizii
ENSCVAG00000007043	pum1	100	75.785	ENSGGOG00000011983	PUM1	100	80.817	Gorilla_gorilla
ENSCVAG00000007043	pum1	100	98.022	ENSHBUG00000018718	pum1	100	98.022	Haplochromis_burtoni
ENSCVAG00000007043	pum1	100	75.392	ENSHGLG00000013819	Pum1	100	80.446	Heterocephalus_glaber_female
ENSCVAG00000007043	pum1	100	75.392	ENSHGLG00100008621	Pum1	100	80.446	Heterocephalus_glaber_male
ENSCVAG00000007043	pum1	92	89.962	ENSHCOG00000005149	pum1	100	88.649	Hippocampus_comes
ENSCVAG00000007043	pum1	100	80.623	ENSIPUG00000020421	pum1	100	80.539	Ictalurus_punctatus
ENSCVAG00000007043	pum1	100	75.785	ENSSTOG00000010757	PUM1	100	80.817	Ictidomys_tridecemlineatus
ENSCVAG00000007043	pum1	100	75.620	ENSJJAG00000000530	Pum1	100	80.693	Jaculus_jaculus
ENSCVAG00000007043	pum1	100	97.334	ENSKMAG00000003481	pum1	100	97.334	Kryptolebias_marmoratus
ENSCVAG00000007043	pum1	100	96.647	ENSLBEG00000002527	pum1	100	96.647	Labrus_bergylta
ENSCVAG00000007043	pum1	100	74.938	ENSLACG00000017188	PUM1	99	72.599	Latimeria_chalumnae
ENSCVAG00000007043	pum1	100	81.667	ENSLOCG00000005210	pum1	99	80.667	Lepisosteus_oculatus
ENSCVAG00000007043	pum1	100	76.100	ENSLAFG00000003178	PUM1	100	74.255	Loxodonta_africana
ENSCVAG00000007043	pum1	100	75.473	ENSMFAG00000010291	PUM1	100	80.817	Macaca_fascicularis
ENSCVAG00000007043	pum1	100	75.473	ENSMMUG00000013520	PUM1	100	80.817	Macaca_mulatta
ENSCVAG00000007043	pum1	100	75.785	ENSMNEG00000034639	PUM1	100	80.817	Macaca_nemestrina
ENSCVAG00000007043	pum1	100	75.785	ENSMLEG00000038743	PUM1	100	80.817	Mandrillus_leucophaeus
ENSCVAG00000007043	pum1	100	97.334	ENSMAMG00000011606	pum1	100	97.334	Mastacembelus_armatus
ENSCVAG00000007043	pum1	100	98.022	ENSMZEG00005005834	pum1	100	98.022	Maylandia_zebra
ENSCVAG00000007043	pum1	100	76.612	ENSMGAG00000000724	PUM1	100	76.618	Meleagris_gallopavo
ENSCVAG00000007043	pum1	100	75.600	ENSMAUG00000022090	Pum1	100	82.797	Mesocricetus_auratus
ENSCVAG00000007043	pum1	94	87.500	ENSMICG00000012213	-	99	72.222	Microcebus_murinus
ENSCVAG00000007043	pum1	100	75.557	ENSMICG00000007713	-	100	80.693	Microcebus_murinus
ENSCVAG00000007043	pum1	100	74.959	ENSMOCG00000015463	Pum1	100	82.447	Microtus_ochrogaster
ENSCVAG00000007043	pum1	85	97.349	ENSMMOG00000019817	pum1	96	97.349	Mola_mola
ENSCVAG00000007043	pum1	100	75.808	ENSMODG00000017067	PUM1	100	74.025	Monodelphis_domestica
ENSCVAG00000007043	pum1	85	98.072	ENSMALG00000016399	pum1	100	98.072	Monopterus_albus
ENSCVAG00000007043	pum1	100	74.711	MGP_CAROLIEiJ_G0026549	Pum1	100	80.446	Mus_caroli
ENSCVAG00000007043	pum1	100	74.711	ENSMUSG00000028580	Pum1	100	80.322	Mus_musculus
ENSCVAG00000007043	pum1	100	74.628	MGP_PahariEiJ_G0028881	Pum1	100	80.322	Mus_pahari
ENSCVAG00000007043	pum1	100	75.207	MGP_SPRETEiJ_G0027529	Pum1	100	80.322	Mus_spretus
ENSCVAG00000007043	pum1	100	76.033	ENSMPUG00000015454	PUM1	100	74.007	Mustela_putorius_furo
ENSCVAG00000007043	pum1	100	75.640	ENSMLUG00000006490	PUM1	100	73.615	Myotis_lucifugus
ENSCVAG00000007043	pum1	100	75.868	ENSNGAG00000002378	Pum1	100	80.817	Nannospalax_galili
ENSCVAG00000007043	pum1	79	98.500	ENSNBRG00000010689	pum1	100	98.500	Neolamprologus_brichardi
ENSCVAG00000007043	pum1	94	87.229	ENSNLEG00000001151	PUM1	100	79.332	Nomascus_leucogenys
ENSCVAG00000007043	pum1	73	78.448	ENSMEUG00000000976	-	67	80.228	Notamacropus_eugenii
ENSCVAG00000007043	pum1	81	91.589	ENSOPRG00000001776	PUM1	75	91.589	Ochotona_princeps
ENSCVAG00000007043	pum1	100	75.537	ENSODEG00000003465	PUM1	100	80.569	Octodon_degus
ENSCVAG00000007043	pum1	100	97.936	ENSONIG00000002290	pum1	100	97.936	Oreochromis_niloticus
ENSCVAG00000007043	pum1	85	63.370	ENSOANG00000004902	-	100	61.235	Ornithorhynchus_anatinus
ENSCVAG00000007043	pum1	99	75.682	ENSOCUG00000008641	PUM1	99	73.737	Oryctolagus_cuniculus
ENSCVAG00000007043	pum1	100	96.572	ENSORLG00000011482	pum1	100	96.572	Oryzias_latipes
ENSCVAG00000007043	pum1	100	96.572	ENSORLG00020019461	pum1	100	96.572	Oryzias_latipes_hni
ENSCVAG00000007043	pum1	100	96.572	ENSORLG00015011375	pum1	100	96.572	Oryzias_latipes_hsok
ENSCVAG00000007043	pum1	87	97.831	ENSOMEG00000009312	pum1	100	97.831	Oryzias_melastigma
ENSCVAG00000007043	pum1	100	73.157	ENSOGAG00000011063	PUM1	100	71.286	Otolemur_garnettii
ENSCVAG00000007043	pum1	100	75.145	ENSOARG00000001899	PUM1	100	73.284	Ovis_aries
ENSCVAG00000007043	pum1	100	75.785	ENSPPAG00000044003	PUM1	100	80.817	Pan_paniscus
ENSCVAG00000007043	pum1	100	75.868	ENSPPRG00000001370	PUM1	100	80.941	Panthera_pardus
ENSCVAG00000007043	pum1	100	75.702	ENSPTIG00000010798	PUM1	100	81.188	Panthera_tigris_altaica
ENSCVAG00000007043	pum1	100	75.785	ENSPTRG00000000453	PUM1	100	80.817	Pan_troglodytes
ENSCVAG00000007043	pum1	100	75.785	ENSPANG00000016338	PUM1	100	80.817	Papio_anubis
ENSCVAG00000007043	pum1	95	92.771	ENSPKIG00000010578	pum1	100	76.833	Paramormyrops_kingsleyae
ENSCVAG00000007043	pum1	100	76.515	ENSPSIG00000014118	PUM1	100	74.421	Pelodiscus_sinensis
ENSCVAG00000007043	pum1	79	99.153	ENSPMGG00000005836	pum1	100	99.153	Periophthalmus_magnuspinnatus
ENSCVAG00000007043	pum1	100	75.600	ENSPEMG00000010009	Pum1	100	82.797	Peromyscus_maniculatus_bairdii
ENSCVAG00000007043	pum1	100	75.891	ENSPCIG00000014151	PUM1	100	80.817	Phascolarctos_cinereus
ENSCVAG00000007043	pum1	95	97.664	ENSPFOG00000007289	pum1	99	98.457	Poecilia_formosa
ENSCVAG00000007043	pum1	100	95.485	ENSPLAG00000007256	pum1	100	98.413	Poecilia_latipinna
ENSCVAG00000007043	pum1	92	97.666	ENSPMEG00000019543	pum1	99	97.666	Poecilia_mexicana
ENSCVAG00000007043	pum1	100	98.194	ENSPREG00000005195	pum1	100	98.305	Poecilia_reticulata
ENSCVAG00000007043	pum1	100	74.230	ENSPPYG00000001621	PUM1	100	72.484	Pongo_abelii
ENSCVAG00000007043	pum1	76	92.901	ENSPCAG00000001979	PUM1	73	92.901	Procavia_capensis
ENSCVAG00000007043	pum1	100	75.557	ENSPCOG00000004398	PUM1	100	80.693	Propithecus_coquereli
ENSCVAG00000007043	pum1	100	73.945	ENSPVAG00000005207	PUM1	97	72.080	Pteropus_vampyrus
ENSCVAG00000007043	pum1	100	98.108	ENSPNYG00000009518	pum1	100	98.108	Pundamilia_nyererei
ENSCVAG00000007043	pum1	100	81.695	ENSPNAG00000026728	pum1	100	81.828	Pygocentrus_nattereri
ENSCVAG00000007043	pum1	100	74.959	ENSRNOG00000011709	Pum1	100	73.675	Rattus_norvegicus
ENSCVAG00000007043	pum1	100	75.785	ENSRBIG00000042521	PUM1	100	80.817	Rhinopithecus_bieti
ENSCVAG00000007043	pum1	100	75.785	ENSRROG00000020156	PUM1	100	80.817	Rhinopithecus_roxellana
ENSCVAG00000007043	pum1	100	75.805	ENSSBOG00000032037	PUM1	100	80.817	Saimiri_boliviensis_boliviensis
ENSCVAG00000007043	pum1	100	75.891	ENSSHAG00000010918	PUM1	100	74.108	Sarcophilus_harrisii
ENSCVAG00000007043	pum1	100	96.303	ENSSMAG00000010918	pum1	100	98.072	Scophthalmus_maximus
ENSCVAG00000007043	pum1	100	97.592	ENSSDUG00000009021	pum1	100	97.592	Seriola_dumerili
ENSCVAG00000007043	pum1	96	97.566	ENSSLDG00000009667	pum1	100	97.566	Seriola_lalandi_dorsalis
ENSCVAG00000007043	pum1	94	79.222	ENSSARG00000003055	PUM1	89	78.251	Sorex_araneus
ENSCVAG00000007043	pum1	100	76.364	ENSSPUG00000006267	PUM1	100	74.338	Sphenodon_punctatus
ENSCVAG00000007043	pum1	100	97.936	ENSSPAG00000016636	pum1	100	98.072	Stegastes_partitus
ENSCVAG00000007043	pum1	100	88.531	ENSSSCG00000003591	PUM1	95	88.934	Sus_scrofa
ENSCVAG00000007043	pum1	100	96.561	ENSTRUG00000013121	pum1	100	98.305	Takifugu_rubripes
ENSCVAG00000007043	pum1	100	95.556	ENSTNIG00000016983	pum1	99	94.957	Tetraodon_nigroviridis
ENSCVAG00000007043	pum1	87	89.024	ENSTBEG00000013810	PUM1	89	89.024	Tupaia_belangeri
ENSCVAG00000007043	pum1	93	78.435	ENSTTRG00000007436	PUM1	88	76.299	Tursiops_truncatus
ENSCVAG00000007043	pum1	99	74.051	ENSUAMG00000018262	-	100	72.011	Ursus_americanus
ENSCVAG00000007043	pum1	92	83.457	ENSVPAG00000005902	PUM1	92	81.312	Vicugna_pacos
ENSCVAG00000007043	pum1	100	75.888	ENSVVUG00000014631	PUM1	100	75.912	Vulpes_vulpes
ENSCVAG00000007043	pum1	100	72.667	ENSXETG00000012904	pum1	99	71.216	Xenopus_tropicalis
ENSCVAG00000007043	pum1	100	98.022	ENSXMAG00000002945	pum1	100	98.201	Xiphophorus_maculatus