EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000007293 (Gene tree)
Gene ID: 107095614
Gene Symbol: chd3
Alias: -
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 47790 bases
Position: chrKL653059.1:268975-316764
Accession: 107095614
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000005628	ResIII	PF04851.15	1.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000006365	-	5448	XM_015391773	ENSCVAP00000005628	1815 (aa)	XP_015247259	-

Gene Model

Click here to download ENSCVAG00000007293's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000007293's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000007293	chd3	90	83.178	ENSCVAG00000004940	chd4a	91	83.178
ENSCVAG00000007293	chd3	91	80.645	ENSCVAG00000001128	-	99	66.904
ENSCVAG00000007293	chd3	96	70.162	ENSCVAG00000016412	-	95	70.110

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000007293	chd3	95	82.996	ENSG00000170004	CHD3	86	82.400	Homo_sapiens
ENSCVAG00000007293	chd3	91	86.037	ENSAPOG00000005614	chd3	99	84.718	Acanthochromis_polyacanthus
ENSCVAG00000007293	chd3	65	85.016	ENSAMEG00000003025	-	85	85.016	Ailuropoda_melanoleuca
ENSCVAG00000007293	chd3	91	86.555	ENSACIG00000019671	chd3	99	93.583	Amphilophus_citrinellus
ENSCVAG00000007293	chd3	95	94.286	ENSAOCG00000023784	chd3	99	88.630	Amphiprion_ocellaris
ENSCVAG00000007293	chd3	95	94.694	ENSAPEG00000006341	chd3	84	93.976	Amphiprion_percula
ENSCVAG00000007293	chd3	95	94.239	ENSATEG00000000848	chd3	99	84.839	Anabas_testudineus
ENSCVAG00000007293	chd3	95	83.665	ENSACAG00000004276	CHD3	83	83.665	Anolis_carolinensis
ENSCVAG00000007293	chd3	95	82.996	ENSANAG00000034323	CHD3	89	82.072	Aotus_nancymaae
ENSCVAG00000007293	chd3	95	91.803	ENSACLG00000009222	chd3	93	90.444	Astatotilapia_calliptera
ENSCVAG00000007293	chd3	95	83.468	ENSBTAG00000014377	CHD3	87	83.468	Bos_taurus
ENSCVAG00000007293	chd3	95	82.996	ENSCJAG00000014766	CHD3	86	82.072	Callithrix_jacchus
ENSCVAG00000007293	chd3	95	82.470	ENSCAFG00000016859	CHD3	86	82.470	Canis_familiaris
ENSCVAG00000007293	chd3	92	83.401	ENSCAFG00020007422	CHD3	89	82.470	Canis_lupus_dingo
ENSCVAG00000007293	chd3	95	82.869	ENSCHIG00000016737	CHD3	87	82.869	Capra_hircus
ENSCVAG00000007293	chd3	95	81.673	ENSTSYG00000035658	CHD3	88	82.258	Carlito_syrichta
ENSCVAG00000007293	chd3	95	82.927	ENSCAPG00000014864	CHD3	85	82.927	Cavia_aperea
ENSCVAG00000007293	chd3	95	82.927	ENSCPOG00000022653	CHD3	86	82.927	Cavia_porcellus
ENSCVAG00000007293	chd3	95	82.661	ENSCCAG00000034792	CHD3	86	82.072	Cebus_capucinus
ENSCVAG00000007293	chd3	95	82.661	ENSCATG00000041717	CHD3	86	82.072	Cercocebus_atys
ENSCVAG00000007293	chd3	95	82.258	ENSCLAG00000010523	CHD3	87	81.673	Chinchilla_lanigera
ENSCVAG00000007293	chd3	95	82.072	ENSCSAG00000011122	CHD3	87	82.072	Chlorocebus_sabaeus
ENSCVAG00000007293	chd3	96	75.281	ENSCPBG00000011966	CHD3	92	91.892	Chrysemys_picta_bellii
ENSCVAG00000007293	chd3	95	82.661	ENSCANG00000037641	CHD3	89	82.072	Colobus_angolensis_palliatus
ENSCVAG00000007293	chd3	95	82.996	ENSCGRG00001011306	Chd3	94	74.154	Cricetulus_griseus_chok1gshd
ENSCVAG00000007293	chd3	89	75.991	ENSCGRG00000007878	Chd3	90	80.681	Cricetulus_griseus_crigri
ENSCVAG00000007293	chd3	99	86.429	ENSCSEG00000004489	chd3	99	86.571	Cynoglossus_semilaevis
ENSCVAG00000007293	chd3	95	87.045	ENSDARG00000021405	chd3	96	82.372	Danio_rerio
ENSCVAG00000007293	chd3	86	85.577	ENSDNOG00000047846	CHD3	78	85.577	Dasypus_novemcinctus
ENSCVAG00000007293	chd3	95	81.673	ENSDORG00000010713	Chd3	88	81.673	Dipodomys_ordii
ENSCVAG00000007293	chd3	95	80.876	ENSETEG00000017733	CHD3	89	80.876	Echinops_telfairi
ENSCVAG00000007293	chd3	71	86.321	ENSEBUG00000008310	chd3	84	86.321	Eptatretus_burgeri
ENSCVAG00000007293	chd3	91	82.072	ENSEASG00005019360	CHD3	89	82.072	Equus_asinus_asinus
ENSCVAG00000007293	chd3	91	82.072	ENSECAG00000010051	CHD3	89	82.072	Equus_caballus
ENSCVAG00000007293	chd3	88	73.600	ENSEEUG00000015205	CHD3	81	73.600	Erinaceus_europaeus
ENSCVAG00000007293	chd3	85	95.946	ENSELUG00000019499	chd3	99	95.946	Esox_lucius
ENSCVAG00000007293	chd3	99	74.100	ENSFCAG00000009629	CHD3	84	81.673	Felis_catus
ENSCVAG00000007293	chd3	92	82.996	ENSFDAG00000008220	CHD3	84	82.072	Fukomys_damarensis
ENSCVAG00000007293	chd3	94	89.177	ENSGMOG00000013599	chd3	86	89.177	Gadus_morhua
ENSCVAG00000007293	chd3	63	93.554	ENSGAFG00000004055	chd3	99	93.554	Gambusia_affinis
ENSCVAG00000007293	chd3	95	90.650	ENSGACG00000019275	chd3	88	87.645	Gasterosteus_aculeatus
ENSCVAG00000007293	chd3	80	75.368	ENSGAGG00000013164	CHD3	96	77.872	Gopherus_agassizii
ENSCVAG00000007293	chd3	95	82.072	ENSGGOG00000013496	CHD3	89	82.072	Gorilla_gorilla
ENSCVAG00000007293	chd3	95	82.996	ENSHGLG00000012017	CHD3	87	82.072	Heterocephalus_glaber_female
ENSCVAG00000007293	chd3	84	77.612	ENSHGLG00100013902	CHD3	86	77.612	Heterocephalus_glaber_male
ENSCVAG00000007293	chd3	95	91.129	ENSHCOG00000010170	chd3	86	91.498	Hippocampus_comes
ENSCVAG00000007293	chd3	86	93.038	ENSIPUG00000003271	chd3	89	93.038	Ictalurus_punctatus
ENSCVAG00000007293	chd3	95	81.673	ENSSTOG00000025907	CHD3	87	81.673	Ictidomys_tridecemlineatus
ENSCVAG00000007293	chd3	95	82.470	ENSJJAG00000017633	Chd3	89	83.065	Jaculus_jaculus
ENSCVAG00000007293	chd3	99	86.918	ENSKMAG00000019292	chd3	93	91.141	Kryptolebias_marmoratus
ENSCVAG00000007293	chd3	99	82.948	ENSLBEG00000028485	chd3	93	83.608	Labrus_bergylta
ENSCVAG00000007293	chd3	94	83.951	ENSLACG00000008031	CHD3	88	83.951	Latimeria_chalumnae
ENSCVAG00000007293	chd3	95	86.400	ENSLOCG00000013965	chd3	84	83.845	Lepisosteus_oculatus
ENSCVAG00000007293	chd3	95	83.673	ENSLAFG00000000572	CHD3	88	82.329	Loxodonta_africana
ENSCVAG00000007293	chd3	95	82.661	ENSMFAG00000020113	CHD3	89	82.072	Macaca_fascicularis
ENSCVAG00000007293	chd3	95	82.661	ENSMMUG00000022221	CHD3	86	82.661	Macaca_mulatta
ENSCVAG00000007293	chd3	95	82.661	ENSMNEG00000001728	CHD3	89	82.072	Macaca_nemestrina
ENSCVAG00000007293	chd3	95	82.661	ENSMLEG00000032249	CHD3	86	82.072	Mandrillus_leucophaeus
ENSCVAG00000007293	chd3	91	86.455	ENSMAMG00000000564	chd3	99	87.976	Mastacembelus_armatus
ENSCVAG00000007293	chd3	95	82.072	ENSMAUG00000013873	Chd3	87	82.072	Mesocricetus_auratus
ENSCVAG00000007293	chd3	95	82.258	ENSMICG00000008741	CHD3	86	82.258	Microcebus_murinus
ENSCVAG00000007293	chd3	95	82.072	ENSMOCG00000004848	Chd3	94	74.342	Microtus_ochrogaster
ENSCVAG00000007293	chd3	96	88.635	ENSMMOG00000012699	chd3	91	94.937	Mola_mola
ENSCVAG00000007293	chd3	94	75.917	ENSMODG00000007509	CHD3	96	75.737	Monodelphis_domestica
ENSCVAG00000007293	chd3	99	74.476	MGP_CAROLIEiJ_G0016564	Chd3	96	74.369	Mus_caroli
ENSCVAG00000007293	chd3	99	74.772	ENSMUSG00000018474	Chd3	96	74.261	Mus_musculus
ENSCVAG00000007293	chd3	99	75.081	MGP_PahariEiJ_G0017695	Chd3	96	74.355	Mus_pahari
ENSCVAG00000007293	chd3	99	74.304	MGP_SPRETEiJ_G0017400	Chd3	96	74.315	Mus_spretus
ENSCVAG00000007293	chd3	85	82.258	ENSMPUG00000008861	CHD3	88	82.258	Mustela_putorius_furo
ENSCVAG00000007293	chd3	94	86.266	ENSMLUG00000014643	-	85	86.266	Myotis_lucifugus
ENSCVAG00000007293	chd3	95	82.996	ENSNGAG00000000773	Chd3	86	82.072	Nannospalax_galili
ENSCVAG00000007293	chd3	92	83.412	ENSNBRG00000000636	chd3	98	84.434	Neolamprologus_brichardi
ENSCVAG00000007293	chd3	93	88.835	ENSNLEG00000009770	CHD3	87	88.835	Nomascus_leucogenys
ENSCVAG00000007293	chd3	87	81.673	ENSMEUG00000005852	CHD3	81	81.673	Notamacropus_eugenii
ENSCVAG00000007293	chd3	97	74.443	ENSOPRG00000011069	CHD3	89	82.213	Ochotona_princeps
ENSCVAG00000007293	chd3	96	79.615	ENSODEG00000017785	CHD3	87	79.615	Octodon_degus
ENSCVAG00000007293	chd3	95	94.715	ENSONIG00000009292	chd3	90	94.000	Oreochromis_niloticus
ENSCVAG00000007293	chd3	94	76.463	ENSOCUG00000029299	CHD3	87	75.477	Oryctolagus_cuniculus
ENSCVAG00000007293	chd3	88	83.770	ENSORLG00000007107	chd3	93	83.654	Oryzias_latipes
ENSCVAG00000007293	chd3	61	87.251	ENSORLG00020008387	chd3	94	87.884	Oryzias_latipes_hni
ENSCVAG00000007293	chd3	87	91.476	ENSOMEG00000013691	chd3	99	86.995	Oryzias_melastigma
ENSCVAG00000007293	chd3	95	82.072	ENSOGAG00000003216	CHD3	87	82.072	Otolemur_garnettii
ENSCVAG00000007293	chd3	95	79.200	ENSOARG00000017855	CHD3	86	79.200	Ovis_aries
ENSCVAG00000007293	chd3	95	82.258	ENSPPAG00000032886	CHD3	89	81.349	Pan_paniscus
ENSCVAG00000007293	chd3	95	82.072	ENSPPRG00000000626	CHD3	86	82.072	Panthera_pardus
ENSCVAG00000007293	chd3	95	82.661	ENSPTRG00000008714	CHD3	89	82.072	Pan_troglodytes
ENSCVAG00000007293	chd3	95	82.661	ENSPANG00000023938	CHD3	89	82.072	Papio_anubis
ENSCVAG00000007293	chd3	95	91.429	ENSPKIG00000006305	chd3	85	90.763	Paramormyrops_kingsleyae
ENSCVAG00000007293	chd3	59	80.724	ENSPSIG00000010177	CHD3	97	81.165	Pelodiscus_sinensis
ENSCVAG00000007293	chd3	95	82.072	ENSPEMG00000014262	Chd3	87	82.072	Peromyscus_maniculatus_bairdii
ENSCVAG00000007293	chd3	97	78.258	ENSPCIG00000005442	CHD3	97	76.115	Phascolarctos_cinereus
ENSCVAG00000007293	chd3	95	94.940	ENSPFOG00000012464	chd3	81	94.940	Poecilia_formosa
ENSCVAG00000007293	chd3	99	87.917	ENSPLAG00000002887	chd3	97	88.055	Poecilia_latipinna
ENSCVAG00000007293	chd3	61	90.818	ENSPMEG00000016725	chd3	91	90.818	Poecilia_mexicana
ENSCVAG00000007293	chd3	99	90.544	ENSPREG00000011044	chd3	94	90.544	Poecilia_reticulata
ENSCVAG00000007293	chd3	94	86.266	ENSPPYG00000007940	CHD3	86	86.266	Pongo_abelii
ENSCVAG00000007293	chd3	91	84.787	ENSPCAG00000004350	CHD3	84	84.787	Procavia_capensis
ENSCVAG00000007293	chd3	95	82.661	ENSPCOG00000020952	CHD3	86	82.661	Propithecus_coquereli
ENSCVAG00000007293	chd3	83	74.592	ENSPVAG00000016344	CHD3	72	82.470	Pteropus_vampyrus
ENSCVAG00000007293	chd3	95	92.623	ENSPNAG00000020393	chd3	96	91.803	Pygocentrus_nattereri
ENSCVAG00000007293	chd3	90	82.591	ENSRNOG00000009722	Chd3	89	81.673	Rattus_norvegicus
ENSCVAG00000007293	chd3	95	82.996	ENSRBIG00000033562	CHD3	89	82.072	Rhinopithecus_bieti
ENSCVAG00000007293	chd3	95	82.661	ENSRROG00000029554	CHD3	89	82.072	Rhinopithecus_roxellana
ENSCVAG00000007293	chd3	95	82.661	ENSSBOG00000020719	CHD3	89	82.072	Saimiri_boliviensis_boliviensis
ENSCVAG00000007293	chd3	99	75.013	ENSSHAG00000014412	CHD3	89	82.996	Sarcophilus_harrisii
ENSCVAG00000007293	chd3	91	81.495	ENSSFOG00015023123	chd3	89	93.534	Scleropages_formosus
ENSCVAG00000007293	chd3	89	97.357	ENSSMAG00000006451	chd3	99	87.783	Scophthalmus_maximus
ENSCVAG00000007293	chd3	59	87.546	ENSSDUG00000005792	chd3	96	89.126	Seriola_dumerili
ENSCVAG00000007293	chd3	95	95.102	ENSSPAG00000013694	chd3	99	93.684	Stegastes_partitus
ENSCVAG00000007293	chd3	95	81.855	ENSSSCG00000021363	CHD3	95	77.267	Sus_scrofa
ENSCVAG00000007293	chd3	81	90.566	ENSTRUG00000014990	chd3	88	90.566	Takifugu_rubripes
ENSCVAG00000007293	chd3	99	85.964	ENSTNIG00000012998	chd3	94	85.909	Tetraodon_nigroviridis
ENSCVAG00000007293	chd3	67	81.982	ENSTBEG00000011454	-	68	81.982	Tupaia_belangeri
ENSCVAG00000007293	chd3	92	83.201	ENSTTRG00000010295	CHD3	84	82.072	Tursiops_truncatus
ENSCVAG00000007293	chd3	98	74.739	ENSUAMG00000005475	CHD3	98	74.183	Ursus_americanus
ENSCVAG00000007293	chd3	52	91.304	ENSVPAG00000010794	-	59	92.593	Vicugna_pacos
ENSCVAG00000007293	chd3	95	82.661	ENSVVUG00000028011	CHD3	88	82.470	Vulpes_vulpes
ENSCVAG00000007293	chd3	95	81.961	ENSXETG00000012991	chd3	82	81.961	Xenopus_tropicalis
ENSCVAG00000007293	chd3	58	94.250	ENSXCOG00000000809	chd3	93	94.250	Xiphophorus_couchianus
ENSCVAG00000007293	chd3	86	95.161	ENSXMAG00000016035	chd3	99	95.161	Xiphophorus_maculatus