EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000007475 (Gene tree)
Gene ID: 107095617
Gene Symbol: si:ch211-212k18.5
Alias: fb25b09|wu:fb25b09
Full Name: spalt like transcription factor 2
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 6692 bases
Position: chrKL653059.1:99370-106061
Accession: 107095617
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000006011	zf-C2H2	PF00096.26	2.9e-18	1	2
ENSCVAP00000006011	zf-C2H2	PF00096.26	2.9e-18	2	2
ENSCVAP00000006011	zf-met	PF12874.7	1.4e-09	1	2
ENSCVAP00000006011	zf-met	PF12874.7	1.4e-09	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000005727	-	4647	XM_015391781	ENSCVAP00000006011	1210 (aa)	XP_015247267	UPI00074267AC

Gene Model

Click here to download ENSCVAG00000007475's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000007475's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000007475	si:ch211-212k18.5	56	67.647	ENSCVAG00000006032	sall2	61	67.647

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000007475	si:ch211-212k18.5	99	74.939	ENSAPOG00000013387	si:ch211-212k18.5	99	74.614	Acanthochromis_polyacanthus
ENSCVAG00000007475	si:ch211-212k18.5	80	79.918	ENSACIG00000019922	si:ch211-212k18.5	99	80.742	Amphilophus_citrinellus
ENSCVAG00000007475	si:ch211-212k18.5	99	72.543	ENSAOCG00000010737	si:ch211-212k18.5	99	71.649	Amphiprion_ocellaris
ENSCVAG00000007475	si:ch211-212k18.5	70	44.592	ENSAOCG00000016559	sall2	53	46.265	Amphiprion_ocellaris
ENSCVAG00000007475	si:ch211-212k18.5	54	46.224	ENSAPEG00000020215	sall2	82	46.797	Amphiprion_percula
ENSCVAG00000007475	si:ch211-212k18.5	99	72.786	ENSAPEG00000006751	si:ch211-212k18.5	99	71.893	Amphiprion_percula
ENSCVAG00000007475	si:ch211-212k18.5	79	80.980	ENSATEG00000001254	si:ch211-212k18.5	99	81.447	Anabas_testudineus
ENSCVAG00000007475	si:ch211-212k18.5	54	46.850	ENSATEG00000007303	sall2	59	46.265	Anabas_testudineus
ENSCVAG00000007475	si:ch211-212k18.5	99	71.440	ENSACLG00000009709	si:ch211-212k18.5	99	71.593	Astatotilapia_calliptera
ENSCVAG00000007475	si:ch211-212k18.5	68	67.647	ENSACLG00000019867	sall2	71	42.333	Astatotilapia_calliptera
ENSCVAG00000007475	si:ch211-212k18.5	54	48.502	ENSAMXG00000020956	sall2	58	48.201	Astyanax_mexicanus
ENSCVAG00000007475	si:ch211-212k18.5	99	55.008	ENSAMXG00000010979	si:ch211-212k18.5	99	55.044	Astyanax_mexicanus
ENSCVAG00000007475	si:ch211-212k18.5	80	39.453	ENSCSEG00000021148	sall2	81	39.089	Cynoglossus_semilaevis
ENSCVAG00000007475	si:ch211-212k18.5	100	66.937	ENSCSEG00000004426	si:ch211-212k18.5	100	67.153	Cynoglossus_semilaevis
ENSCVAG00000007475	si:ch211-212k18.5	97	54.250	ENSDARG00000103316	si:ch211-212k18.5	97	53.455	Danio_rerio
ENSCVAG00000007475	si:ch211-212k18.5	61	51.667	ENSDARG00000075116	sall2	67	51.667	Danio_rerio
ENSCVAG00000007475	si:ch211-212k18.5	99	56.100	ENSELUG00000024534	si:ch211-212k18.5	99	55.439	Esox_lucius
ENSCVAG00000007475	si:ch211-212k18.5	70	48.879	ENSELUG00000004389	sall2	66	48.726	Esox_lucius
ENSCVAG00000007475	si:ch211-212k18.5	100	87.273	ENSFHEG00000017264	si:ch211-212k18.5	100	87.273	Fundulus_heteroclitus
ENSCVAG00000007475	si:ch211-212k18.5	57	67.647	ENSFHEG00000017550	sall2	61	67.647	Fundulus_heteroclitus
ENSCVAG00000007475	si:ch211-212k18.5	99	86.600	ENSGAFG00000003746	si:ch211-212k18.5	99	85.691	Gambusia_affinis
ENSCVAG00000007475	si:ch211-212k18.5	99	71.522	ENSHBUG00000019672	si:ch211-212k18.5	99	72.886	Haplochromis_burtoni
ENSCVAG00000007475	si:ch211-212k18.5	83	67.647	ENSHBUG00000002882	sall2	64	42.765	Haplochromis_burtoni
ENSCVAG00000007475	si:ch211-212k18.5	98	60.050	ENSHCOG00000002842	si:ch211-212k18.5	99	58.828	Hippocampus_comes
ENSCVAG00000007475	si:ch211-212k18.5	99	52.126	ENSIPUG00000002559	sall2	99	51.339	Ictalurus_punctatus
ENSCVAG00000007475	si:ch211-212k18.5	63	69.697	ENSKMAG00000020172	sall2	58	44.489	Kryptolebias_marmoratus
ENSCVAG00000007475	si:ch211-212k18.5	99	75.082	ENSKMAG00000019657	si:ch211-212k18.5	99	75.000	Kryptolebias_marmoratus
ENSCVAG00000007475	si:ch211-212k18.5	99	70.138	ENSLBEG00000020887	si:ch211-212k18.5	99	69.487	Labrus_bergylta
ENSCVAG00000007475	si:ch211-212k18.5	70	84.579	ENSMAMG00000015887	si:ch211-212k18.5	99	83.061	Mastacembelus_armatus
ENSCVAG00000007475	si:ch211-212k18.5	63	47.135	ENSMAMG00000016229	sall2	59	45.372	Mastacembelus_armatus
ENSCVAG00000007475	si:ch211-212k18.5	83	67.647	ENSMZEG00005012103	sall2	64	42.765	Maylandia_zebra
ENSCVAG00000007475	si:ch211-212k18.5	99	71.440	ENSMZEG00005021214	si:ch211-212k18.5	99	71.593	Maylandia_zebra
ENSCVAG00000007475	si:ch211-212k18.5	91	81.348	ENSMMOG00000012726	si:ch211-212k18.5	99	79.663	Mola_mola
ENSCVAG00000007475	si:ch211-212k18.5	92	74.019	ENSMALG00000000979	si:ch211-212k18.5	97	72.886	Monopterus_albus
ENSCVAG00000007475	si:ch211-212k18.5	70	46.154	ENSNBRG00000017645	sall2	60	48.787	Neolamprologus_brichardi
ENSCVAG00000007475	si:ch211-212k18.5	94	68.755	ENSNBRG00000023948	si:ch211-212k18.5	96	68.668	Neolamprologus_brichardi
ENSCVAG00000007475	si:ch211-212k18.5	55	45.241	ENSORLG00000026871	sall2	87	38.283	Oryzias_latipes
ENSCVAG00000007475	si:ch211-212k18.5	99	69.098	ENSORLG00000030429	si:ch211-212k18.5	99	68.382	Oryzias_latipes
ENSCVAG00000007475	si:ch211-212k18.5	55	45.241	ENSORLG00020007873	sall2	60	45.882	Oryzias_latipes_hni
ENSCVAG00000007475	si:ch211-212k18.5	99	68.525	ENSORLG00020008145	si:ch211-212k18.5	99	68.219	Oryzias_latipes_hni
ENSCVAG00000007475	si:ch211-212k18.5	55	44.720	ENSORLG00015002422	sall2	87	39.029	Oryzias_latipes_hsok
ENSCVAG00000007475	si:ch211-212k18.5	99	68.115	ENSORLG00015004982	si:ch211-212k18.5	99	68.167	Oryzias_latipes_hsok
ENSCVAG00000007475	si:ch211-212k18.5	99	68.974	ENSOMEG00000013949	si:ch211-212k18.5	99	69.100	Oryzias_melastigma
ENSCVAG00000007475	si:ch211-212k18.5	55	44.954	ENSOMEG00000012904	sall2	59	45.323	Oryzias_melastigma
ENSCVAG00000007475	si:ch211-212k18.5	70	50.542	ENSPKIG00000009207	sall2	66	49.400	Paramormyrops_kingsleyae
ENSCVAG00000007475	si:ch211-212k18.5	94	65.824	ENSPMGG00000018714	si:ch211-212k18.5	99	65.126	Periophthalmus_magnuspinnatus
ENSCVAG00000007475	si:ch211-212k18.5	99	87.427	ENSPFOG00000023705	si:ch211-212k18.5	99	87.434	Poecilia_formosa
ENSCVAG00000007475	si:ch211-212k18.5	58	45.387	ENSPLAG00000018320	sall2	62	45.169	Poecilia_latipinna
ENSCVAG00000007475	si:ch211-212k18.5	99	87.427	ENSPLAG00000002577	si:ch211-212k18.5	99	87.262	Poecilia_latipinna
ENSCVAG00000007475	si:ch211-212k18.5	99	87.427	ENSPMEG00000016395	si:ch211-212k18.5	99	86.380	Poecilia_mexicana
ENSCVAG00000007475	si:ch211-212k18.5	61	64.706	ENSPREG00000021908	sall2	65	64.706	Poecilia_reticulata
ENSCVAG00000007475	si:ch211-212k18.5	99	87.097	ENSPREG00000005292	si:ch211-212k18.5	99	87.097	Poecilia_reticulata
ENSCVAG00000007475	si:ch211-212k18.5	99	68.167	ENSPNYG00000021576	si:ch211-212k18.5	99	68.309	Pundamilia_nyererei
ENSCVAG00000007475	si:ch211-212k18.5	95	56.069	ENSPNAG00000006123	si:ch211-212k18.5	94	55.565	Pygocentrus_nattereri
ENSCVAG00000007475	si:ch211-212k18.5	99	70.000	ENSSMAG00000006241	si:ch211-212k18.5	99	69.431	Scophthalmus_maximus
ENSCVAG00000007475	si:ch211-212k18.5	74	73.333	ENSSMAG00000014157	sall2	56	73.333	Scophthalmus_maximus
ENSCVAG00000007475	si:ch211-212k18.5	70	43.330	ENSSDUG00000012274	sall2	53	46.134	Seriola_dumerili
ENSCVAG00000007475	si:ch211-212k18.5	99	73.987	ENSSDUG00000006164	si:ch211-212k18.5	99	72.528	Seriola_dumerili
ENSCVAG00000007475	si:ch211-212k18.5	99	75.770	ENSSLDG00000003393	si:ch211-212k18.5	99	74.311	Seriola_lalandi_dorsalis
ENSCVAG00000007475	si:ch211-212k18.5	70	43.950	ENSSLDG00000001653	sall2	53	45.801	Seriola_lalandi_dorsalis
ENSCVAG00000007475	si:ch211-212k18.5	97	71.799	ENSSPAG00000013435	si:ch211-212k18.5	97	73.080	Stegastes_partitus
ENSCVAG00000007475	si:ch211-212k18.5	92	71.702	ENSTRUG00000025082	si:ch211-212k18.5	98	68.592	Takifugu_rubripes
ENSCVAG00000007475	si:ch211-212k18.5	57	60.526	ENSTRUG00000024556	sall2	58	45.862	Takifugu_rubripes
ENSCVAG00000007475	si:ch211-212k18.5	99	84.083	ENSXCOG00000000762	si:ch211-212k18.5	99	84.545	Xiphophorus_couchianus
ENSCVAG00000007475	si:ch211-212k18.5	99	86.083	ENSXMAG00000001461	si:ch211-212k18.5	99	85.950	Xiphophorus_maculatus