EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000007498 (Gene tree)
Gene ID: 107083817
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival motor neuron protein 1-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 9844 bases
Position: chrKL652585.1:269131-278974
Accession: 107083817
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000006014	SMN	PF06003.12	2e-110	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000005698	-	1694	XM_015373304	ENSCVAP00000006014	284 (aa)	XP_015228790	UPI000742B770

Gene Model

Click here to download ENSCVAG00000007498's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000007498's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000007498	smn1	94	52.015	ENSG00000205571	SMN2	94	52.045	Homo_sapiens
ENSCVAG00000007498	smn1	94	52.015	ENSG00000172062	SMN1	94	52.045	Homo_sapiens
ENSCVAG00000007498	smn1	100	79.930	ENSAPOG00000011324	smn1	100	79.930	Acanthochromis_polyacanthus
ENSCVAG00000007498	smn1	94	52.536	ENSAMEG00000003316	-	89	52.555	Ailuropoda_melanoleuca
ENSCVAG00000007498	smn1	60	78.107	ENSACIG00000007598	smn1	93	78.107	Amphilophus_citrinellus
ENSCVAG00000007498	smn1	93	74.621	ENSACIG00000019772	-	99	74.717	Amphilophus_citrinellus
ENSCVAG00000007498	smn1	100	80.634	ENSAOCG00000024444	smn1	100	80.634	Amphiprion_ocellaris
ENSCVAG00000007498	smn1	100	80.986	ENSAPEG00000016504	smn1	100	81.404	Amphiprion_percula
ENSCVAG00000007498	smn1	95	81.111	ENSATEG00000002182	smn1	82	81.111	Anabas_testudineus
ENSCVAG00000007498	smn1	98	51.579	ENSACAG00000010017	-	96	49.296	Anolis_carolinensis
ENSCVAG00000007498	smn1	94	51.449	ENSANAG00000032133	-	91	48.352	Aotus_nancymaae
ENSCVAG00000007498	smn1	99	76.761	ENSACLG00000007308	smn1	94	74.648	Astatotilapia_calliptera
ENSCVAG00000007498	smn1	100	58.681	ENSAMXG00000013884	smn1	100	62.500	Astyanax_mexicanus
ENSCVAG00000007498	smn1	95	53.791	ENSBTAG00000005743	SMN2	94	50.709	Bos_taurus
ENSCVAG00000007498	smn1	94	51.493	ENSCJAG00000016290	-	92	48.905	Callithrix_jacchus
ENSCVAG00000007498	smn1	94	50.725	ENSCAFG00000007812	SMN	93	52.190	Canis_familiaris
ENSCVAG00000007498	smn1	95	50.360	ENSCAFG00020019229	-	87	52.190	Canis_lupus_dingo
ENSCVAG00000007498	smn1	95	50.362	ENSCHIG00000015559	-	92	50.352	Capra_hircus
ENSCVAG00000007498	smn1	94	52.788	ENSTSYG00000012058	-	94	52.878	Carlito_syrichta
ENSCVAG00000007498	smn1	95	50.545	ENSCPOG00000036973	-	92	50.179	Cavia_porcellus
ENSCVAG00000007498	smn1	95	51.429	ENSCPOG00000012328	-	95	50.342	Cavia_porcellus
ENSCVAG00000007498	smn1	94	52.747	ENSCCAG00000018127	-	92	47.751	Cebus_capucinus
ENSCVAG00000007498	smn1	94	52.015	ENSCATG00000037002	-	94	51.264	Cercocebus_atys
ENSCVAG00000007498	smn1	95	50.909	ENSCLAG00000000284	-	93	52.098	Chinchilla_lanigera
ENSCVAG00000007498	smn1	94	52.015	ENSCSAG00000015688	-	92	52.174	Chlorocebus_sabaeus
ENSCVAG00000007498	smn1	96	48.789	ENSCPBG00000010968	-	97	47.312	Chrysemys_picta_bellii
ENSCVAG00000007498	smn1	92	50.187	ENSCANG00000033324	-	89	49.638	Colobus_angolensis_palliatus
ENSCVAG00000007498	smn1	94	52.045	ENSCANG00000038242	-	94	51.079	Colobus_angolensis_palliatus
ENSCVAG00000007498	smn1	95	40.794	ENSCGRG00001016998	-	92	40.876	Cricetulus_griseus_chok1gshd
ENSCVAG00000007498	smn1	95	53.237	ENSCGRG00001017959	-	93	53.405	Cricetulus_griseus_chok1gshd
ENSCVAG00000007498	smn1	95	53.237	ENSCGRG00000007698	Smn1	93	53.405	Cricetulus_griseus_crigri
ENSCVAG00000007498	smn1	97	66.084	ENSCSEG00000015227	smn1	99	66.434	Cynoglossus_semilaevis
ENSCVAG00000007498	smn1	100	62.369	ENSDARG00000018494	smn1	100	59.862	Danio_rerio
ENSCVAG00000007498	smn1	82	47.280	ENSDNOG00000007283	-	97	46.559	Dasypus_novemcinctus
ENSCVAG00000007498	smn1	54	53.205	ENSDNOG00000045949	-	68	50.000	Dasypus_novemcinctus
ENSCVAG00000007498	smn1	94	42.007	ENSDORG00000007082	Smn1	91	43.590	Dipodomys_ordii
ENSCVAG00000007498	smn1	58	46.154	ENSETEG00000001406	-	75	46.914	Echinops_telfairi
ENSCVAG00000007498	smn1	96	38.312	ENSEBUG00000011902	smn1	96	37.584	Eptatretus_burgeri
ENSCVAG00000007498	smn1	89	46.360	ENSEASG00005018000	-	89	47.082	Equus_asinus_asinus
ENSCVAG00000007498	smn1	95	50.719	ENSECAG00000015215	-	93	51.273	Equus_caballus
ENSCVAG00000007498	smn1	88	48.106	ENSEEUG00000015777	-	100	46.792	Erinaceus_europaeus
ENSCVAG00000007498	smn1	97	65.836	ENSELUG00000018067	smn1	100	63.448	Esox_lucius
ENSCVAG00000007498	smn1	94	50.182	ENSFCAG00000028292	SMN	92	51.986	Felis_catus
ENSCVAG00000007498	smn1	95	54.874	ENSFALG00000012320	-	95	47.426	Ficedula_albicollis
ENSCVAG00000007498	smn1	95	48.936	ENSFDAG00000017683	-	92	48.084	Fukomys_damarensis
ENSCVAG00000007498	smn1	97	88.448	ENSFHEG00000018508	smn1	100	88.448	Fundulus_heteroclitus
ENSCVAG00000007498	smn1	100	62.937	ENSGMOG00000017279	smn1	98	63.732	Gadus_morhua
ENSCVAG00000007498	smn1	94	50.896	ENSGALG00000002430	SMN	95	48.630	Gallus_gallus
ENSCVAG00000007498	smn1	100	90.493	ENSGAFG00000009501	smn1	100	90.493	Gambusia_affinis
ENSCVAG00000007498	smn1	100	78.596	ENSGACG00000010584	smn1	97	76.842	Gasterosteus_aculeatus
ENSCVAG00000007498	smn1	97	32.653	ENSGAGG00000013639	-	60	50.000	Gopherus_agassizii
ENSCVAG00000007498	smn1	96	50.365	ENSGAGG00000011374	-	95	51.568	Gopherus_agassizii
ENSCVAG00000007498	smn1	91	48.263	ENSGGOG00000003872	-	93	49.421	Gorilla_gorilla
ENSCVAG00000007498	smn1	61	55.172	ENSGGOG00000026704	-	80	55.172	Gorilla_gorilla
ENSCVAG00000007498	smn1	100	78.873	ENSHBUG00000013987	smn1	100	76.761	Haplochromis_burtoni
ENSCVAG00000007498	smn1	95	48.944	ENSHGLG00000001018	-	93	48.252	Heterocephalus_glaber_female
ENSCVAG00000007498	smn1	95	47.842	ENSHGLG00000001905	-	94	49.466	Heterocephalus_glaber_female
ENSCVAG00000007498	smn1	95	48.944	ENSHGLG00100011252	-	93	48.252	Heterocephalus_glaber_male
ENSCVAG00000007498	smn1	93	47.794	ENSHGLG00100018676	-	96	49.455	Heterocephalus_glaber_male
ENSCVAG00000007498	smn1	94	72.659	ENSHCOG00000017136	smn1	89	72.659	Hippocampus_comes
ENSCVAG00000007498	smn1	100	59.582	ENSIPUG00000012580	smn1	89	61.724	Ictalurus_punctatus
ENSCVAG00000007498	smn1	91	52.060	ENSSTOG00000012288	-	94	51.673	Ictidomys_tridecemlineatus
ENSCVAG00000007498	smn1	62	46.023	ENSJJAG00000014853	-	86	47.024	Jaculus_jaculus
ENSCVAG00000007498	smn1	100	80.139	ENSKMAG00000007239	smn1	100	80.139	Kryptolebias_marmoratus
ENSCVAG00000007498	smn1	100	80.282	ENSLBEG00000022550	smn1	100	80.282	Labrus_bergylta
ENSCVAG00000007498	smn1	97	36.027	ENSLACG00000009808	-	95	35.593	Latimeria_chalumnae
ENSCVAG00000007498	smn1	98	32.990	ENSLOCG00000000801	-	94	30.033	Lepisosteus_oculatus
ENSCVAG00000007498	smn1	100	55.670	ENSLOCG00000011339	smn1	100	57.439	Lepisosteus_oculatus
ENSCVAG00000007498	smn1	94	51.246	ENSLAFG00000003425	-	89	51.071	Loxodonta_africana
ENSCVAG00000007498	smn1	94	52.381	ENSMFAG00000031523	SMN1	95	51.504	Macaca_fascicularis
ENSCVAG00000007498	smn1	94	49.084	ENSMFAG00000008812	-	92	49.275	Macaca_fascicularis
ENSCVAG00000007498	smn1	94	52.381	ENSMMUG00000020214	SMN1	94	52.416	Macaca_mulatta
ENSCVAG00000007498	smn1	94	48.352	ENSMMUG00000030594	-	92	48.551	Macaca_mulatta
ENSCVAG00000007498	smn1	74	39.815	ENSMNEG00000036423	-	80	40.284	Macaca_nemestrina
ENSCVAG00000007498	smn1	94	52.381	ENSMNEG00000035094	-	94	52.416	Macaca_nemestrina
ENSCVAG00000007498	smn1	94	52.381	ENSMLEG00000041902	-	94	53.333	Mandrillus_leucophaeus
ENSCVAG00000007498	smn1	100	79.930	ENSMAMG00000011034	smn1	100	79.930	Mastacembelus_armatus
ENSCVAG00000007498	smn1	100	78.873	ENSMZEG00005013634	smn1	100	76.761	Maylandia_zebra
ENSCVAG00000007498	smn1	69	47.291	ENSMGAG00000008889	-	94	41.014	Meleagris_gallopavo
ENSCVAG00000007498	smn1	94	54.015	ENSMAUG00000010262	Smn1	92	53.285	Mesocricetus_auratus
ENSCVAG00000007498	smn1	55	58.642	ENSMICG00000034708	-	71	59.375	Microcebus_murinus
ENSCVAG00000007498	smn1	95	53.214	ENSMOCG00000017833	Smn1	93	53.237	Microtus_ochrogaster
ENSCVAG00000007498	smn1	96	68.248	ENSMMOG00000005504	smn1	98	64.413	Mola_mola
ENSCVAG00000007498	smn1	94	49.296	ENSMODG00000001436	-	57	55.758	Monodelphis_domestica
ENSCVAG00000007498	smn1	100	80.986	ENSMALG00000008025	smn1	100	80.986	Monopterus_albus
ENSCVAG00000007498	smn1	94	53.191	MGP_CAROLIEiJ_G0018836	Smn1	92	53.430	Mus_caroli
ENSCVAG00000007498	smn1	94	52.837	ENSMUSG00000021645	Smn1	92	53.069	Mus_musculus
ENSCVAG00000007498	smn1	94	51.852	MGP_PahariEiJ_G0015911	Smn1	92	53.137	Mus_pahari
ENSCVAG00000007498	smn1	94	52.837	MGP_SPRETEiJ_G0019718	Smn1	92	53.069	Mus_spretus
ENSCVAG00000007498	smn1	92	51.661	ENSMPUG00000014470	-	94	52.000	Mustela_putorius_furo
ENSCVAG00000007498	smn1	94	51.986	ENSMLUG00000010603	-	89	51.439	Myotis_lucifugus
ENSCVAG00000007498	smn1	95	50.357	ENSNGAG00000019833	Smn1	93	52.536	Nannospalax_galili
ENSCVAG00000007498	smn1	100	80.634	ENSNBRG00000023000	smn1	100	80.634	Neolamprologus_brichardi
ENSCVAG00000007498	smn1	94	52.381	ENSNLEG00000004454	-	94	52.416	Nomascus_leucogenys
ENSCVAG00000007498	smn1	80	43.568	ENSMEUG00000011393	-	100	43.404	Notamacropus_eugenii
ENSCVAG00000007498	smn1	88	48.846	ENSOPRG00000002015	-	100	51.515	Ochotona_princeps
ENSCVAG00000007498	smn1	92	51.321	ENSODEG00000015976	-	92	53.558	Octodon_degus
ENSCVAG00000007498	smn1	100	80.634	ENSONIG00000011799	smn1	100	80.634	Oreochromis_niloticus
ENSCVAG00000007498	smn1	94	53.069	ENSOANG00000001626	-	95	49.645	Ornithorhynchus_anatinus
ENSCVAG00000007498	smn1	95	52.174	ENSOCUG00000026649	-	92	48.097	Oryctolagus_cuniculus
ENSCVAG00000007498	smn1	95	53.333	ENSOCUG00000017097	-	92	47.368	Oryctolagus_cuniculus
ENSCVAG00000007498	smn1	95	40.860	ENSOCUG00000025183	-	93	43.060	Oryctolagus_cuniculus
ENSCVAG00000007498	smn1	100	78.521	ENSORLG00000010552	smn1	100	78.521	Oryzias_latipes
ENSCVAG00000007498	smn1	100	72.281	ENSORLG00020007936	smn1	100	69.686	Oryzias_latipes_hni
ENSCVAG00000007498	smn1	100	78.169	ENSORLG00015022425	smn1	100	78.169	Oryzias_latipes_hsok
ENSCVAG00000007498	smn1	100	77.465	ENSOMEG00000007824	smn1	100	78.873	Oryzias_melastigma
ENSCVAG00000007498	smn1	91	46.468	ENSOGAG00000031414	-	92	47.636	Otolemur_garnettii
ENSCVAG00000007498	smn1	94	51.071	ENSOARG00000005425	-	97	49.462	Ovis_aries
ENSCVAG00000007498	smn1	94	52.015	ENSPPAG00000036640	-	94	52.045	Pan_paniscus
ENSCVAG00000007498	smn1	94	50.182	ENSPPRG00000005575	-	92	51.986	Panthera_pardus
ENSCVAG00000007498	smn1	94	51.087	ENSPTIG00000007745	-	92	51.799	Panthera_tigris_altaica
ENSCVAG00000007498	smn1	94	51.095	ENSPTRG00000016955	-	94	51.481	Pan_troglodytes
ENSCVAG00000007498	smn1	94	52.381	ENSPANG00000013601	-	92	52.536	Papio_anubis
ENSCVAG00000007498	smn1	94	49.815	ENSPANG00000000253	-	92	50.000	Papio_anubis
ENSCVAG00000007498	smn1	100	55.517	ENSPKIG00000011096	smn1	100	53.125	Paramormyrops_kingsleyae
ENSCVAG00000007498	smn1	92	50.365	ENSPSIG00000014787	-	83	46.454	Pelodiscus_sinensis
ENSCVAG00000007498	smn1	100	66.899	ENSPMGG00000012285	smn1	97	67.500	Periophthalmus_magnuspinnatus
ENSCVAG00000007498	smn1	92	42.279	ENSPMAG00000005004	smn1	91	37.500	Petromyzon_marinus
ENSCVAG00000007498	smn1	94	49.470	ENSPCIG00000025764	-	58	55.758	Phascolarctos_cinereus
ENSCVAG00000007498	smn1	100	90.141	ENSPFOG00000007786	smn1	100	90.141	Poecilia_formosa
ENSCVAG00000007498	smn1	100	90.493	ENSPLAG00000012071	smn1	100	90.493	Poecilia_latipinna
ENSCVAG00000007498	smn1	100	90.141	ENSPMEG00000017085	smn1	100	90.141	Poecilia_mexicana
ENSCVAG00000007498	smn1	100	90.141	ENSPREG00000005824	smn1	100	90.141	Poecilia_reticulata
ENSCVAG00000007498	smn1	92	50.376	ENSPPYG00000015533	-	95	51.128	Pongo_abelii
ENSCVAG00000007498	smn1	50	47.887	ENSPPYG00000019189	-	99	38.400	Pongo_abelii
ENSCVAG00000007498	smn1	91	48.352	ENSPCAG00000004187	-	97	50.368	Procavia_capensis
ENSCVAG00000007498	smn1	65	49.474	ENSPCOG00000022307	-	65	56.944	Propithecus_coquereli
ENSCVAG00000007498	smn1	94	52.536	ENSPVAG00000005977	-	92	51.971	Pteropus_vampyrus
ENSCVAG00000007498	smn1	100	80.634	ENSPNYG00000014148	smn1	100	80.634	Pundamilia_nyererei
ENSCVAG00000007498	smn1	100	62.937	ENSPNAG00000014007	smn1	87	64.706	Pygocentrus_nattereri
ENSCVAG00000007498	smn1	95	53.430	ENSRNOG00000018067	Smn1	93	52.364	Rattus_norvegicus
ENSCVAG00000007498	smn1	92	48.462	ENSRBIG00000036775	-	89	45.985	Rhinopithecus_bieti
ENSCVAG00000007498	smn1	94	52.015	ENSRBIG00000037052	-	92	52.174	Rhinopithecus_bieti
ENSCVAG00000007498	smn1	94	52.015	ENSRROG00000039399	-	94	52.045	Rhinopithecus_roxellana
ENSCVAG00000007498	smn1	95	46.863	ENSRROG00000031088	-	91	46.840	Rhinopithecus_roxellana
ENSCVAG00000007498	smn1	94	54.613	ENSSBOG00000011665	-	92	52.963	Saimiri_boliviensis_boliviensis
ENSCVAG00000007498	smn1	55	52.795	ENSSBOG00000020112	-	87	43.600	Saimiri_boliviensis_boliviensis
ENSCVAG00000007498	smn1	94	49.648	ENSSHAG00000001499	-	89	47.312	Sarcophilus_harrisii
ENSCVAG00000007498	smn1	100	59.930	ENSSFOG00015015507	smn1	100	58.478	Scleropages_formosus
ENSCVAG00000007498	smn1	100	77.113	ENSSMAG00000007922	smn1	100	76.761	Scophthalmus_maximus
ENSCVAG00000007498	smn1	100	83.099	ENSSDUG00000018533	smn1	100	83.099	Seriola_dumerili
ENSCVAG00000007498	smn1	100	83.451	ENSSLDG00000021135	smn1	100	83.451	Seriola_lalandi_dorsalis
ENSCVAG00000007498	smn1	94	55.678	ENSSPUG00000000373	-	96	47.987	Sphenodon_punctatus
ENSCVAG00000007498	smn1	100	80.634	ENSSPAG00000004345	smn1	100	80.634	Stegastes_partitus
ENSCVAG00000007498	smn1	95	39.781	ENSSSCG00000029127	-	67	68.750	Sus_scrofa
ENSCVAG00000007498	smn1	94	52.364	ENSSSCG00000016970	-	92	53.455	Sus_scrofa
ENSCVAG00000007498	smn1	91	50.916	ENSTGUG00000001548	-	95	45.520	Taeniopygia_guttata
ENSCVAG00000007498	smn1	100	63.732	ENSTRUG00000000736	smn	100	66.197	Takifugu_rubripes
ENSCVAG00000007498	smn1	100	62.329	ENSTNIG00000009892	smn1	100	65.411	Tetraodon_nigroviridis
ENSCVAG00000007498	smn1	54	61.783	ENSTBEG00000002399	-	76	61.783	Tupaia_belangeri
ENSCVAG00000007498	smn1	54	60.897	ENSTTRG00000005080	-	91	52.688	Tursiops_truncatus
ENSCVAG00000007498	smn1	58	57.576	ENSUAMG00000024947	-	59	57.576	Ursus_americanus
ENSCVAG00000007498	smn1	95	52.878	ENSUMAG00000007842	-	69	53.285	Ursus_maritimus
ENSCVAG00000007498	smn1	60	77.778	ENSVPAG00000009887	-	61	82.609	Vicugna_pacos
ENSCVAG00000007498	smn1	94	50.725	ENSVVUG00000006934	-	93	52.190	Vulpes_vulpes
ENSCVAG00000007498	smn1	87	31.801	ENSXETG00000004912	-	79	58.621	Xenopus_tropicalis
ENSCVAG00000007498	smn1	95	55.872	ENSXETG00000018189	smn2	57	59.639	Xenopus_tropicalis
ENSCVAG00000007498	smn1	100	89.437	ENSXMAG00000001521	smn1	100	89.437	Xiphophorus_maculatus