EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000007582 (Gene tree)
Gene ID: 107087116
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain-containing protein 1-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 50875 bases
Position: chrKL652509.1:2818215-2869089
Accession: 107087116
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000023878	R3H	PF01424.22	2.1e-12	1	1
ENSCVAP00000006052	R3H	PF01424.22	2.3e-12	1	1
ENSCVAP00000006078	R3H	PF01424.22	2.4e-12	1	1
ENSCVAP00000006095	R3H	PF01424.22	2.4e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000005570	-	4900	XM_015378513	ENSCVAP00000006095	1021 (aa)	XP_015233999	UPI0007428A1B
ENSCVAT00000005620	-	4829	XM_015378564	ENSCVAP00000023878	985 (aa)	XP_015234050	-
ENSCVAT00000005645	-	4820	XM_015378573	ENSCVAP00000006052	982 (aa)	XP_015234059	-
ENSCVAT00000005590	-	4937	XM_015378504	ENSCVAP00000006078	1021 (aa)	XP_015233990	UPI0007428A1B

Gene Model

Click here to download ENSCVAG00000007582's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000007582's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000007582	r3hdm1	79	62.718	ENSCVAG00000009058	r3hdm2	82	53.081
ENSCVAG00000007582	r3hdm1	52	35.832	ENSCVAG00000007202	-	80	34.554

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000007582	r3hdm1	91	61.067	ENSG00000048991	R3HDM1	97	64.236	Homo_sapiens
ENSCVAG00000007582	r3hdm1	100	83.030	ENSAPOG00000020850	r3hdm1	96	82.934	Acanthochromis_polyacanthus
ENSCVAG00000007582	r3hdm1	99	47.725	ENSAMEG00000014886	R3HDM1	89	48.500	Ailuropoda_melanoleuca
ENSCVAG00000007582	r3hdm1	100	82.105	ENSAOCG00000005192	r3hdm1	100	82.392	Amphiprion_ocellaris
ENSCVAG00000007582	r3hdm1	100	81.719	ENSAPEG00000016108	r3hdm1	100	82.115	Amphiprion_percula
ENSCVAG00000007582	r3hdm1	100	77.756	ENSATEG00000000232	r3hdm1	100	78.352	Anabas_testudineus
ENSCVAG00000007582	r3hdm1	99	46.839	ENSAPLG00000015231	R3HDM1	89	47.500	Anas_platyrhynchos
ENSCVAG00000007582	r3hdm1	99	49.023	ENSACAG00000001676	R3HDM1	89	48.794	Anolis_carolinensis
ENSCVAG00000007582	r3hdm1	91	61.333	ENSANAG00000035334	R3HDM1	87	61.333	Aotus_nancymaae
ENSCVAG00000007582	r3hdm1	100	77.232	ENSACLG00000027282	r3hdm1	100	77.232	Astatotilapia_calliptera
ENSCVAG00000007582	r3hdm1	57	35.167	ENSAMXG00000020587	arpp21	54	53.363	Astyanax_mexicanus
ENSCVAG00000007582	r3hdm1	86	72.756	ENSAMXG00000003536	r3hdm1	77	74.503	Astyanax_mexicanus
ENSCVAG00000007582	r3hdm1	91	62.470	ENSAMXG00000012861	R3HDM1	89	61.743	Astyanax_mexicanus
ENSCVAG00000007582	r3hdm1	99	48.502	ENSBTAG00000013302	R3HDM1	89	48.928	Bos_taurus
ENSCVAG00000007582	r3hdm1	91	61.067	ENSCJAG00000011718	R3HDM1	87	61.067	Callithrix_jacchus
ENSCVAG00000007582	r3hdm1	99	47.822	ENSCAFG00000005075	R3HDM1	89	48.696	Canis_familiaris
ENSCVAG00000007582	r3hdm1	99	47.948	ENSCAFG00020016119	R3HDM1	99	55.062	Canis_lupus_dingo
ENSCVAG00000007582	r3hdm1	99	48.221	ENSCHIG00000020851	R3HDM1	89	48.833	Capra_hircus
ENSCVAG00000007582	r3hdm1	99	47.130	ENSCPOG00000012784	R3HDM1	100	60.535	Cavia_porcellus
ENSCVAG00000007582	r3hdm1	91	60.800	ENSCCAG00000027199	R3HDM1	87	60.800	Cebus_capucinus
ENSCVAG00000007582	r3hdm1	97	55.849	ENSCATG00000023642	R3HDM1	87	60.800	Cercocebus_atys
ENSCVAG00000007582	r3hdm1	99	47.814	ENSCLAG00000007962	R3HDM1	100	63.211	Chinchilla_lanigera
ENSCVAG00000007582	r3hdm1	99	47.619	ENSCSAG00000016356	R3HDM1	89	48.366	Chlorocebus_sabaeus
ENSCVAG00000007582	r3hdm1	81	63.235	ENSCHOG00000013638	R3HDM1	68	66.935	Choloepus_hoffmanni
ENSCVAG00000007582	r3hdm1	82	70.504	ENSCPBG00000009645	R3HDM1	86	70.504	Chrysemys_picta_bellii
ENSCVAG00000007582	r3hdm1	91	57.635	ENSCANG00000034748	R3HDM1	87	61.333	Colobus_angolensis_palliatus
ENSCVAG00000007582	r3hdm1	99	47.015	ENSCGRG00001012357	R3hdm1	86	47.721	Cricetulus_griseus_chok1gshd
ENSCVAG00000007582	r3hdm1	99	47.015	ENSCGRG00000012080	R3hdm1	100	63.880	Cricetulus_griseus_crigri
ENSCVAG00000007582	r3hdm1	100	67.087	ENSCSEG00000008944	r3hdm1	100	68.186	Cynoglossus_semilaevis
ENSCVAG00000007582	r3hdm1	99	46.214	ENSDNOG00000000771	R3HDM1	89	46.615	Dasypus_novemcinctus
ENSCVAG00000007582	r3hdm1	91	55.166	ENSETEG00000013606	R3HDM1	89	45.208	Echinops_telfairi
ENSCVAG00000007582	r3hdm1	91	59.666	ENSEASG00005007392	R3HDM1	88	59.905	Equus_asinus_asinus
ENSCVAG00000007582	r3hdm1	91	59.666	ENSECAG00000019114	R3HDM1	88	59.905	Equus_caballus
ENSCVAG00000007582	r3hdm1	62	50.000	ENSEEUG00000012589	R3HDM1	56	49.823	Erinaceus_europaeus
ENSCVAG00000007582	r3hdm1	91	50.160	ENSELUG00000014413	r3hdm1	83	53.073	Esox_lucius
ENSCVAG00000007582	r3hdm1	95	52.187	ENSELUG00000004909	R3HDM1	85	52.699	Esox_lucius
ENSCVAG00000007582	r3hdm1	91	58.950	ENSFCAG00000027113	R3HDM1	88	59.905	Felis_catus
ENSCVAG00000007582	r3hdm1	84	49.556	ENSFALG00000013731	R3HDM1	71	49.109	Ficedula_albicollis
ENSCVAG00000007582	r3hdm1	99	47.530	ENSFDAG00000016478	R3HDM1	100	63.545	Fukomys_damarensis
ENSCVAG00000007582	r3hdm1	100	88.116	ENSFHEG00000018713	r3hdm1	100	88.116	Fundulus_heteroclitus
ENSCVAG00000007582	r3hdm1	67	62.288	ENSGMOG00000006042	-	79	57.293	Gadus_morhua
ENSCVAG00000007582	r3hdm1	87	60.267	ENSGALG00000012246	R3HDM1	84	64.590	Gallus_gallus
ENSCVAG00000007582	r3hdm1	100	81.407	ENSGAFG00000006203	r3hdm1	100	82.010	Gambusia_affinis
ENSCVAG00000007582	r3hdm1	95	78.010	ENSGACG00000014925	r3hdm1	95	78.150	Gasterosteus_aculeatus
ENSCVAG00000007582	r3hdm1	85	65.798	ENSGAGG00000007840	R3HDM1	84	59.169	Gopherus_agassizii
ENSCVAG00000007582	r3hdm1	91	61.067	ENSGGOG00000008156	R3HDM1	87	61.067	Gorilla_gorilla
ENSCVAG00000007582	r3hdm1	55	80.396	ENSHBUG00000015737	R3HDM1	99	80.360	Haplochromis_burtoni
ENSCVAG00000007582	r3hdm1	99	47.628	ENSHGLG00000015718	R3HDM1	100	63.545	Heterocephalus_glaber_female
ENSCVAG00000007582	r3hdm1	99	47.535	ENSHGLG00100003184	-	100	63.880	Heterocephalus_glaber_male
ENSCVAG00000007582	r3hdm1	88	41.379	ENSHGLG00100015374	-	91	38.077	Heterocephalus_glaber_male
ENSCVAG00000007582	r3hdm1	100	66.002	ENSHCOG00000013366	r3hdm1	100	66.002	Hippocampus_comes
ENSCVAG00000007582	r3hdm1	53	37.288	ENSIPUG00000020552	arpp21	77	37.815	Ictalurus_punctatus
ENSCVAG00000007582	r3hdm1	85	70.779	ENSIPUG00000001676	R3HDM1	100	59.709	Ictalurus_punctatus
ENSCVAG00000007582	r3hdm1	91	63.073	ENSIPUG00000013629	r3hdm1	81	70.764	Ictalurus_punctatus
ENSCVAG00000007582	r3hdm1	99	47.668	ENSSTOG00000007572	R3HDM1	100	63.880	Ictidomys_tridecemlineatus
ENSCVAG00000007582	r3hdm1	95	51.087	ENSLACG00000005334	R3HDM1	87	50.149	Latimeria_chalumnae
ENSCVAG00000007582	r3hdm1	99	50.742	ENSLOCG00000001641	r3hdm1	90	51.111	Lepisosteus_oculatus
ENSCVAG00000007582	r3hdm1	86	64.308	ENSLAFG00000009065	R3HDM1	85	64.489	Loxodonta_africana
ENSCVAG00000007582	r3hdm1	91	61.067	ENSMFAG00000030331	R3HDM1	88	60.382	Macaca_fascicularis
ENSCVAG00000007582	r3hdm1	91	61.067	ENSMMUG00000009844	R3HDM1	87	61.067	Macaca_mulatta
ENSCVAG00000007582	r3hdm1	91	61.067	ENSMNEG00000027793	R3HDM1	88	60.382	Macaca_nemestrina
ENSCVAG00000007582	r3hdm1	91	61.067	ENSMLEG00000043189	R3HDM1	87	61.067	Mandrillus_leucophaeus
ENSCVAG00000007582	r3hdm1	100	80.307	ENSMAMG00000004532	r3hdm1	100	80.211	Mastacembelus_armatus
ENSCVAG00000007582	r3hdm1	100	80.241	ENSMZEG00005003157	r3hdm1	100	80.241	Maylandia_zebra
ENSCVAG00000007582	r3hdm1	96	47.743	ENSMGAG00000012461	R3HDM1	88	47.252	Meleagris_gallopavo
ENSCVAG00000007582	r3hdm1	99	47.070	ENSMAUG00000010315	R3hdm1	100	63.880	Mesocricetus_auratus
ENSCVAG00000007582	r3hdm1	91	60.533	ENSMICG00000042655	-	92	60.533	Microcebus_murinus
ENSCVAG00000007582	r3hdm1	91	60.800	ENSMICG00000005900	-	87	60.800	Microcebus_murinus
ENSCVAG00000007582	r3hdm1	51	55.932	ENSMOCG00000019833	-	100	63.545	Microtus_ochrogaster
ENSCVAG00000007582	r3hdm1	99	46.196	ENSMODG00000000923	R3HDM1	96	45.980	Monodelphis_domestica
ENSCVAG00000007582	r3hdm1	100	77.767	ENSMALG00000009000	r3hdm1	90	77.575	Monopterus_albus
ENSCVAG00000007582	r3hdm1	99	47.059	MGP_CAROLIEiJ_G0014543	R3hdm1	100	64.082	Mus_caroli
ENSCVAG00000007582	r3hdm1	99	47.059	ENSMUSG00000056211	R3hdm1	100	64.082	Mus_musculus
ENSCVAG00000007582	r3hdm1	99	46.767	MGP_PahariEiJ_G0027779	R3hdm1	100	64.082	Mus_pahari
ENSCVAG00000007582	r3hdm1	99	47.152	MGP_SPRETEiJ_G0015350	R3hdm1	100	64.082	Mus_spretus
ENSCVAG00000007582	r3hdm1	99	48.299	ENSMPUG00000002412	R3HDM1	89	48.596	Mustela_putorius_furo
ENSCVAG00000007582	r3hdm1	99	47.864	ENSMLUG00000013824	R3HDM1	89	48.356	Myotis_lucifugus
ENSCVAG00000007582	r3hdm1	91	61.067	ENSNLEG00000008622	R3HDM1	87	61.067	Nomascus_leucogenys
ENSCVAG00000007582	r3hdm1	94	43.096	ENSMEUG00000011784	R3HDM1	90	44.058	Notamacropus_eugenii
ENSCVAG00000007582	r3hdm1	99	46.927	ENSODEG00000008607	R3HDM1	100	62.876	Octodon_degus
ENSCVAG00000007582	r3hdm1	95	77.606	ENSONIG00000012017	r3hdm1	89	77.503	Oreochromis_niloticus
ENSCVAG00000007582	r3hdm1	99	47.195	ENSOANG00000007987	R3HDM1	89	47.633	Ornithorhynchus_anatinus
ENSCVAG00000007582	r3hdm1	99	47.614	ENSOCUG00000017366	R3HDM1	97	48.350	Oryctolagus_cuniculus
ENSCVAG00000007582	r3hdm1	100	73.314	ENSORLG00000004297	r3hdm1	100	73.892	Oryzias_latipes
ENSCVAG00000007582	r3hdm1	100	73.769	ENSORLG00015017355	r3hdm1	100	74.372	Oryzias_latipes_hsok
ENSCVAG00000007582	r3hdm1	54	77.514	ENSOMEG00000003882	-	100	77.697	Oryzias_melastigma
ENSCVAG00000007582	r3hdm1	99	47.864	ENSOGAG00000003136	R3HDM1	89	47.919	Otolemur_garnettii
ENSCVAG00000007582	r3hdm1	99	47.911	ENSOARG00000010788	R3HDM1	89	48.788	Ovis_aries
ENSCVAG00000007582	r3hdm1	91	61.067	ENSPPAG00000027858	R3HDM1	87	61.067	Pan_paniscus
ENSCVAG00000007582	r3hdm1	91	60.533	ENSPPRG00000002626	R3HDM1	87	60.533	Panthera_pardus
ENSCVAG00000007582	r3hdm1	91	60.800	ENSPTIG00000016581	R3HDM1	87	60.800	Panthera_tigris_altaica
ENSCVAG00000007582	r3hdm1	91	61.067	ENSPTRG00000012494	R3HDM1	87	61.067	Pan_troglodytes
ENSCVAG00000007582	r3hdm1	91	61.067	ENSPANG00000026448	R3HDM1	87	61.067	Papio_anubis
ENSCVAG00000007582	r3hdm1	89	69.091	ENSPKIG00000004328	r3hdm1	78	71.617	Paramormyrops_kingsleyae
ENSCVAG00000007582	r3hdm1	99	47.915	ENSPSIG00000012915	R3HDM1	88	48.303	Pelodiscus_sinensis
ENSCVAG00000007582	r3hdm1	99	47.295	ENSPEMG00000015187	R3hdm1	100	64.214	Peromyscus_maniculatus_bairdii
ENSCVAG00000007582	r3hdm1	95	38.797	ENSPMAG00000003369	-	95	40.116	Petromyzon_marinus
ENSCVAG00000007582	r3hdm1	88	63.609	ENSPCIG00000002491	R3HDM1	88	59.620	Phascolarctos_cinereus
ENSCVAG00000007582	r3hdm1	100	85.645	ENSPFOG00000015036	r3hdm1	100	85.645	Poecilia_formosa
ENSCVAG00000007582	r3hdm1	100	82.613	ENSPLAG00000018042	r3hdm1	100	82.613	Poecilia_latipinna
ENSCVAG00000007582	r3hdm1	100	82.530	ENSPMEG00000023947	r3hdm1	100	82.530	Poecilia_mexicana
ENSCVAG00000007582	r3hdm1	100	85.801	ENSPREG00000007902	r3hdm1	100	86.103	Poecilia_reticulata
ENSCVAG00000007582	r3hdm1	99	46.951	ENSPPYG00000012815	R3HDM1	89	47.725	Pongo_abelii
ENSCVAG00000007582	r3hdm1	93	59.226	ENSPCAG00000006208	R3HDM1	76	60.237	Procavia_capensis
ENSCVAG00000007582	r3hdm1	79	69.675	ENSPCOG00000012698	R3HDM1	79	69.675	Propithecus_coquereli
ENSCVAG00000007582	r3hdm1	99	42.468	ENSPVAG00000006098	R3HDM1	89	43.107	Pteropus_vampyrus
ENSCVAG00000007582	r3hdm1	84	72.203	ENSPNAG00000005436	R3HDM1	86	71.186	Pygocentrus_nattereri
ENSCVAG00000007582	r3hdm1	52	38.104	ENSPNAG00000004162	arpp21	69	45.251	Pygocentrus_nattereri
ENSCVAG00000007582	r3hdm1	83	72.347	ENSPNAG00000013952	r3hdm1	77	73.841	Pygocentrus_nattereri
ENSCVAG00000007582	r3hdm1	99	46.425	ENSRNOG00000004099	R3hdm1	89	46.960	Rattus_norvegicus
ENSCVAG00000007582	r3hdm1	78	69.784	ENSRBIG00000033317	R3HDM1	86	69.784	Rhinopithecus_bieti
ENSCVAG00000007582	r3hdm1	91	57.389	ENSRROG00000034534	R3HDM1	87	61.067	Rhinopithecus_roxellana
ENSCVAG00000007582	r3hdm1	91	61.333	ENSSBOG00000020389	R3HDM1	87	61.333	Saimiri_boliviensis_boliviensis
ENSCVAG00000007582	r3hdm1	99	46.809	ENSSHAG00000016999	R3HDM1	89	47.206	Sarcophilus_harrisii
ENSCVAG00000007582	r3hdm1	100	48.120	ENSSFOG00015019851	-	94	52.195	Scleropages_formosus
ENSCVAG00000007582	r3hdm1	85	74.419	ENSSFOG00015014134	r3hdm1	78	73.422	Scleropages_formosus
ENSCVAG00000007582	r3hdm1	100	75.615	ENSSMAG00000001669	r3hdm1	90	75.615	Scophthalmus_maximus
ENSCVAG00000007582	r3hdm1	100	79.487	ENSSDUG00000010749	r3hdm1	100	80.079	Seriola_dumerili
ENSCVAG00000007582	r3hdm1	100	81.095	ENSSLDG00000004499	r3hdm1	90	81.592	Seriola_lalandi_dorsalis
ENSCVAG00000007582	r3hdm1	55	52.769	ENSSARG00000000352	-	50	54.072	Sorex_araneus
ENSCVAG00000007582	r3hdm1	99	47.236	ENSSPUG00000004167	R3HDM1	88	47.476	Sphenodon_punctatus
ENSCVAG00000007582	r3hdm1	100	81.737	ENSSPAG00000004648	r3hdm1	100	81.836	Stegastes_partitus
ENSCVAG00000007582	r3hdm1	91	58.602	ENSSSCG00000015692	R3HDM1	87	58.602	Sus_scrofa
ENSCVAG00000007582	r3hdm1	96	48.286	ENSTGUG00000011750	R3HDM1	89	46.984	Taeniopygia_guttata
ENSCVAG00000007582	r3hdm1	100	71.848	ENSTRUG00000011654	r3hdm1	99	71.848	Takifugu_rubripes
ENSCVAG00000007582	r3hdm1	98	67.335	ENSTNIG00000010362	r3hdm1	99	67.535	Tetraodon_nigroviridis
ENSCVAG00000007582	r3hdm1	99	44.650	ENSTTRG00000003935	R3HDM1	89	44.908	Tursiops_truncatus
ENSCVAG00000007582	r3hdm1	70	61.600	ENSUAMG00000024806	R3HDM1	99	55.338	Ursus_americanus
ENSCVAG00000007582	r3hdm1	91	60.800	ENSUMAG00000005552	R3HDM1	87	60.800	Ursus_maritimus
ENSCVAG00000007582	r3hdm1	88	46.205	ENSVPAG00000007333	R3HDM1	74	48.548	Vicugna_pacos
ENSCVAG00000007582	r3hdm1	91	60.800	ENSVVUG00000006457	R3HDM1	88	60.800	Vulpes_vulpes
ENSCVAG00000007582	r3hdm1	99	44.273	ENSXETG00000019330	r3hdm1	99	44.455	Xenopus_tropicalis
ENSCVAG00000007582	r3hdm1	79	76.553	ENSXCOG00000017448	r3hdm1	93	80.667	Xiphophorus_couchianus
ENSCVAG00000007582	r3hdm1	100	83.961	ENSXMAG00000007885	r3hdm1	100	84.734	Xiphophorus_maculatus