EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000007896 (Gene tree)
Gene ID: 107086800
Gene Symbol: lig4
Alias: zgc:165595
Full Name: DNA ligase 4
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 10621 bases
Position: chrKL652509.1:2269293-2279913
Accession: 107086800
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000024066	RNA_ligase	PF09414.10	7.8e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000005123	-	3063	XM_015377999	ENSCVAP00000024066	908 (aa)	XP_015233485	UPI0007426E39

Gene Model

Click here to download ENSCVAG00000007896's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000007896's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000007896	lig4	99	66.556	ENSG00000174405	LIG4	100	67.180	Homo_sapiens
ENSCVAG00000007896	lig4	100	89.549	ENSAPOG00000000866	lig4	100	89.549	Acanthochromis_polyacanthus
ENSCVAG00000007896	lig4	99	64.474	ENSAMEG00000019685	LIG4	99	64.474	Ailuropoda_melanoleuca
ENSCVAG00000007896	lig4	100	89.133	ENSACIG00000018309	lig4	100	89.133	Amphilophus_citrinellus
ENSCVAG00000007896	lig4	100	88.999	ENSAOCG00000011768	lig4	100	88.999	Amphiprion_ocellaris
ENSCVAG00000007896	lig4	100	89.109	ENSAPEG00000017815	lig4	100	89.109	Amphiprion_percula
ENSCVAG00000007896	lig4	100	88.474	ENSATEG00000005583	lig4	100	88.474	Anabas_testudineus
ENSCVAG00000007896	lig4	96	67.237	ENSAPLG00000001673	LIG4	99	67.237	Anas_platyrhynchos
ENSCVAG00000007896	lig4	99	67.329	ENSACAG00000014566	LIG4	99	67.329	Anolis_carolinensis
ENSCVAG00000007896	lig4	99	66.113	ENSANAG00000012446	LIG4	99	66.113	Aotus_nancymaae
ENSCVAG00000007896	lig4	100	87.377	ENSACLG00000027051	lig4	100	87.377	Astatotilapia_calliptera
ENSCVAG00000007896	lig4	100	79.847	ENSAMXG00000008192	lig4	95	79.847	Astyanax_mexicanus
ENSCVAG00000007896	lig4	99	65.449	ENSBTAG00000015868	LIG4	99	65.449	Bos_taurus
ENSCVAG00000007896	lig4	99	66.113	ENSCJAG00000014689	LIG4	99	66.113	Callithrix_jacchus
ENSCVAG00000007896	lig4	99	65.116	ENSCAFG00000006031	LIG4	99	65.116	Canis_familiaris
ENSCVAG00000007896	lig4	99	65.116	ENSCAFG00020021230	LIG4	99	65.116	Canis_lupus_dingo
ENSCVAG00000007896	lig4	99	65.227	ENSCHIG00000001019	LIG4	99	65.227	Capra_hircus
ENSCVAG00000007896	lig4	99	64.895	ENSCAPG00000006284	LIG4	99	64.895	Cavia_aperea
ENSCVAG00000007896	lig4	99	64.784	ENSCPOG00000014266	LIG4	99	64.784	Cavia_porcellus
ENSCVAG00000007896	lig4	99	66.445	ENSCCAG00000019971	LIG4	99	66.445	Cebus_capucinus
ENSCVAG00000007896	lig4	99	66.044	ENSCATG00000021075	LIG4	99	66.044	Cercocebus_atys
ENSCVAG00000007896	lig4	99	65.351	ENSCLAG00000003376	LIG4	99	65.351	Chinchilla_lanigera
ENSCVAG00000007896	lig4	99	66.154	ENSCSAG00000000211	LIG4	99	66.154	Chlorocebus_sabaeus
ENSCVAG00000007896	lig4	99	69.734	ENSCPBG00000023291	LIG4	100	69.071	Chrysemys_picta_bellii
ENSCVAG00000007896	lig4	69	47.724	ENSCING00000009536	-	97	47.724	Ciona_intestinalis
ENSCVAG00000007896	lig4	83	45.072	ENSCSAVG00000010336	-	98	45.072	Ciona_savignyi
ENSCVAG00000007896	lig4	99	65.604	ENSCANG00000005805	LIG4	99	65.604	Colobus_angolensis_palliatus
ENSCVAG00000007896	lig4	99	65.376	ENSCGRG00001012072	Lig4	99	65.376	Cricetulus_griseus_chok1gshd
ENSCVAG00000007896	lig4	99	65.376	ENSCGRG00000013417	Lig4	99	65.376	Cricetulus_griseus_crigri
ENSCVAG00000007896	lig4	97	85.023	ENSCSEG00000013905	lig4	96	85.023	Cynoglossus_semilaevis
ENSCVAG00000007896	lig4	100	79.121	ENSDARG00000060620	lig4	100	79.121	Danio_rerio
ENSCVAG00000007896	lig4	99	65.708	ENSDNOG00000000513	LIG4	99	65.708	Dasypus_novemcinctus
ENSCVAG00000007896	lig4	99	66.224	ENSDORG00000027303	Lig4	99	66.224	Dipodomys_ordii
ENSCVAG00000007896	lig4	84	32.246	FBgn0030506	Lig4	85	32.246	Drosophila_melanogaster
ENSCVAG00000007896	lig4	98	63.415	ENSETEG00000015563	LIG4	100	63.636	Echinops_telfairi
ENSCVAG00000007896	lig4	99	45.195	ENSEBUG00000014243	lig4	99	45.195	Eptatretus_burgeri
ENSCVAG00000007896	lig4	99	65.670	ENSEASG00005022073	LIG4	99	65.670	Equus_asinus_asinus
ENSCVAG00000007896	lig4	99	65.559	ENSECAG00000003257	LIG4	99	65.559	Equus_caballus
ENSCVAG00000007896	lig4	98	84.093	ENSELUG00000006787	lig4	99	84.205	Esox_lucius
ENSCVAG00000007896	lig4	99	64.673	ENSFCAG00000031985	LIG4	99	64.673	Felis_catus
ENSCVAG00000007896	lig4	89	69.307	ENSFALG00000004214	LIG4	98	69.307	Ficedula_albicollis
ENSCVAG00000007896	lig4	99	64.341	ENSFDAG00000008973	LIG4	99	64.341	Fukomys_damarensis
ENSCVAG00000007896	lig4	100	90.789	ENSFHEG00000007398	lig4	91	90.899	Fundulus_heteroclitus
ENSCVAG00000007896	lig4	85	78.065	ENSGMOG00000012843	lig4	99	78.065	Gadus_morhua
ENSCVAG00000007896	lig4	100	65.899	ENSGALG00000016854	LIG4	100	65.899	Gallus_gallus
ENSCVAG00000007896	lig4	99	89.934	ENSGAFG00000019779	lig4	96	90.700	Gambusia_affinis
ENSCVAG00000007896	lig4	99	83.682	ENSGACG00000014135	lig4	99	83.682	Gasterosteus_aculeatus
ENSCVAG00000007896	lig4	99	66.334	ENSGGOG00000027771	LIG4	99	66.334	Gorilla_gorilla
ENSCVAG00000007896	lig4	100	87.157	ENSHBUG00000006245	lig4	100	87.157	Haplochromis_burtoni
ENSCVAG00000007896	lig4	99	65.116	ENSHGLG00000000718	LIG4	99	65.116	Heterocephalus_glaber_female
ENSCVAG00000007896	lig4	99	65.116	ENSHGLG00100003265	LIG4	99	65.116	Heterocephalus_glaber_male
ENSCVAG00000007896	lig4	100	82.237	ENSHCOG00000012010	lig4	100	82.237	Hippocampus_comes
ENSCVAG00000007896	lig4	100	78.462	ENSIPUG00000013748	lig4	100	78.462	Ictalurus_punctatus
ENSCVAG00000007896	lig4	99	65.559	ENSSTOG00000024303	LIG4	99	65.559	Ictidomys_tridecemlineatus
ENSCVAG00000007896	lig4	99	65.342	ENSJJAG00000006750	Lig4	99	65.342	Jaculus_jaculus
ENSCVAG00000007896	lig4	100	87.363	ENSKMAG00000001149	lig4	100	87.363	Kryptolebias_marmoratus
ENSCVAG00000007896	lig4	91	87.440	ENSLBEG00000014578	lig4	100	87.440	Labrus_bergylta
ENSCVAG00000007896	lig4	100	68.237	ENSLACG00000003282	LIG4	100	68.237	Latimeria_chalumnae
ENSCVAG00000007896	lig4	100	72.757	ENSLOCG00000008901	lig4	99	72.757	Lepisosteus_oculatus
ENSCVAG00000007896	lig4	99	65.011	ENSLAFG00000031152	LIG4	99	65.011	Loxodonta_africana
ENSCVAG00000007896	lig4	99	66.154	ENSMFAG00000037235	LIG4	99	66.154	Macaca_fascicularis
ENSCVAG00000007896	lig4	99	65.934	ENSMMUG00000008874	LIG4	99	65.934	Macaca_mulatta
ENSCVAG00000007896	lig4	99	66.154	ENSMNEG00000023575	LIG4	99	66.154	Macaca_nemestrina
ENSCVAG00000007896	lig4	99	66.044	ENSMLEG00000026720	LIG4	99	66.044	Mandrillus_leucophaeus
ENSCVAG00000007896	lig4	100	88.694	ENSMAMG00000008472	lig4	99	88.694	Mastacembelus_armatus
ENSCVAG00000007896	lig4	100	87.377	ENSMZEG00005001855	lig4	100	87.377	Maylandia_zebra
ENSCVAG00000007896	lig4	100	66.009	ENSMGAG00000015532	LIG4	100	66.009	Meleagris_gallopavo
ENSCVAG00000007896	lig4	99	64.341	ENSMOCG00000019000	Lig4	99	64.341	Microtus_ochrogaster
ENSCVAG00000007896	lig4	100	87.047	ENSMMOG00000004390	lig4	100	87.047	Mola_mola
ENSCVAG00000007896	lig4	99	65.604	ENSMODG00000025064	LIG4	99	66.191	Monodelphis_domestica
ENSCVAG00000007896	lig4	100	87.596	ENSMALG00000008555	lig4	100	87.596	Monopterus_albus
ENSCVAG00000007896	lig4	99	65.449	MGP_CAROLIEiJ_G0030809	Lig4	99	65.449	Mus_caroli
ENSCVAG00000007896	lig4	99	64.784	ENSMUSG00000049717	Lig4	99	64.784	Mus_musculus
ENSCVAG00000007896	lig4	99	65.338	MGP_PahariEiJ_G0021270	Lig4	99	65.338	Mus_pahari
ENSCVAG00000007896	lig4	99	65.116	MGP_SPRETEiJ_G0031917	Lig4	99	65.116	Mus_spretus
ENSCVAG00000007896	lig4	99	65.265	ENSMPUG00000018675	LIG4	99	65.265	Mustela_putorius_furo
ENSCVAG00000007896	lig4	99	66.002	ENSMLUG00000001267	LIG4	99	66.002	Myotis_lucifugus
ENSCVAG00000007896	lig4	99	65.781	ENSNGAG00000013258	Lig4	99	65.781	Nannospalax_galili
ENSCVAG00000007896	lig4	100	87.377	ENSNBRG00000021252	lig4	100	87.377	Neolamprologus_brichardi
ENSCVAG00000007896	lig4	99	66.002	ENSNLEG00000007888	LIG4	99	66.002	Nomascus_leucogenys
ENSCVAG00000007896	lig4	99	64.120	ENSOPRG00000005765	LIG4	99	64.120	Ochotona_princeps
ENSCVAG00000007896	lig4	99	64.563	ENSODEG00000019683	LIG4	99	64.563	Octodon_degus
ENSCVAG00000007896	lig4	100	87.377	ENSONIG00000011969	lig4	99	87.377	Oreochromis_niloticus
ENSCVAG00000007896	lig4	99	64.895	ENSOCUG00000015734	LIG4	99	64.895	Oryctolagus_cuniculus
ENSCVAG00000007896	lig4	99	84.835	ENSORLG00000004041	lig4	99	84.835	Oryzias_latipes
ENSCVAG00000007896	lig4	99	85.055	ENSORLG00020019607	lig4	99	85.055	Oryzias_latipes_hni
ENSCVAG00000007896	lig4	99	84.835	ENSORLG00015017754	lig4	99	84.835	Oryzias_latipes_hsok
ENSCVAG00000007896	lig4	76	89.520	ENSOMEG00000003459	lig4	99	89.520	Oryzias_melastigma
ENSCVAG00000007896	lig4	98	65.965	ENSOGAG00000032120	LIG4	99	65.965	Otolemur_garnettii
ENSCVAG00000007896	lig4	81	69.471	ENSOARG00000005590	LIG4	97	69.471	Ovis_aries
ENSCVAG00000007896	lig4	99	66.334	ENSPPAG00000032998	LIG4	99	66.334	Pan_paniscus
ENSCVAG00000007896	lig4	99	65.227	ENSPPRG00000017804	LIG4	99	65.227	Panthera_pardus
ENSCVAG00000007896	lig4	99	65.116	ENSPTIG00000010051	LIG4	99	65.116	Panthera_tigris_altaica
ENSCVAG00000007896	lig4	99	66.445	ENSPTRG00000006025	LIG4	99	66.445	Pan_troglodytes
ENSCVAG00000007896	lig4	99	66.154	ENSPANG00000007562	LIG4	99	66.154	Papio_anubis
ENSCVAG00000007896	lig4	100	77.363	ENSPKIG00000011645	lig4	99	77.363	Paramormyrops_kingsleyae
ENSCVAG00000007896	lig4	100	69.113	ENSPSIG00000001504	LIG4	100	69.113	Pelodiscus_sinensis
ENSCVAG00000007896	lig4	98	81.075	ENSPMGG00000013486	lig4	100	80.416	Periophthalmus_magnuspinnatus
ENSCVAG00000007896	lig4	99	64.602	ENSPEMG00000000076	Lig4	99	64.602	Peromyscus_maniculatus_bairdii
ENSCVAG00000007896	lig4	99	65.932	ENSPCIG00000021882	LIG4	99	65.932	Phascolarctos_cinereus
ENSCVAG00000007896	lig4	100	91.019	ENSPFOG00000000797	lig4	100	91.676	Poecilia_formosa
ENSCVAG00000007896	lig4	100	90.909	ENSPLAG00000001196	lig4	100	91.566	Poecilia_latipinna
ENSCVAG00000007896	lig4	100	91.128	ENSPMEG00000021353	lig4	100	91.895	Poecilia_mexicana
ENSCVAG00000007896	lig4	100	90.361	ENSPREG00000007323	lig4	100	91.019	Poecilia_reticulata
ENSCVAG00000007896	lig4	99	65.891	ENSPPYG00000005540	LIG4	99	65.891	Pongo_abelii
ENSCVAG00000007896	lig4	99	65.495	ENSPVAG00000016403	LIG4	99	65.495	Pteropus_vampyrus
ENSCVAG00000007896	lig4	100	87.377	ENSPNYG00000009660	lig4	100	87.377	Pundamilia_nyererei
ENSCVAG00000007896	lig4	99	81.828	ENSPNAG00000028056	lig4	99	81.828	Pygocentrus_nattereri
ENSCVAG00000007896	lig4	99	81.828	ENSPNAG00000028069	LIG4	99	81.828	Pygocentrus_nattereri
ENSCVAG00000007896	lig4	99	64.505	ENSRNOG00000014605	Lig4	99	64.505	Rattus_norvegicus
ENSCVAG00000007896	lig4	99	64.835	ENSRBIG00000039962	LIG4	99	64.835	Rhinopithecus_bieti
ENSCVAG00000007896	lig4	99	65.714	ENSRROG00000006040	LIG4	99	65.714	Rhinopithecus_roxellana
ENSCVAG00000007896	lig4	99	65.891	ENSSBOG00000019029	LIG4	99	65.891	Saimiri_boliviensis_boliviensis
ENSCVAG00000007896	lig4	99	63.797	ENSSHAG00000009525	LIG4	99	64.388	Sarcophilus_harrisii
ENSCVAG00000007896	lig4	100	78.791	ENSSFOG00015012835	lig4	100	78.791	Scleropages_formosus
ENSCVAG00000007896	lig4	100	83.700	ENSSMAG00000011267	lig4	100	83.700	Scophthalmus_maximus
ENSCVAG00000007896	lig4	100	87.869	ENSSDUG00000010343	lig4	100	87.978	Seriola_dumerili
ENSCVAG00000007896	lig4	100	86.339	ENSSLDG00000003239	lig4	100	86.339	Seriola_lalandi_dorsalis
ENSCVAG00000007896	lig4	99	64.576	ENSSARG00000006573	LIG4	99	64.576	Sorex_araneus
ENSCVAG00000007896	lig4	92	70.273	ENSSPUG00000002444	LIG4	100	70.273	Sphenodon_punctatus
ENSCVAG00000007896	lig4	100	89.023	ENSSPAG00000001609	lig4	100	89.023	Stegastes_partitus
ENSCVAG00000007896	lig4	99	65.011	ENSSSCG00000009540	LIG4	99	65.011	Sus_scrofa
ENSCVAG00000007896	lig4	99	67.631	ENSTGUG00000010795	LIG4	99	67.631	Taeniopygia_guttata
ENSCVAG00000007896	lig4	100	87.157	ENSTRUG00000009984	lig4	100	87.157	Takifugu_rubripes
ENSCVAG00000007896	lig4	100	84.031	ENSTNIG00000010348	lig4	100	84.251	Tetraodon_nigroviridis
ENSCVAG00000007896	lig4	99	65.559	ENSTBEG00000017741	LIG4	99	65.559	Tupaia_belangeri
ENSCVAG00000007896	lig4	99	64.563	ENSTTRG00000012660	LIG4	99	64.563	Tursiops_truncatus
ENSCVAG00000007896	lig4	99	64.712	ENSUAMG00000003773	LIG4	99	64.712	Ursus_americanus
ENSCVAG00000007896	lig4	100	68.675	ENSXETG00000002654	lig4	100	68.675	Xenopus_tropicalis
ENSCVAG00000007896	lig4	100	90.800	ENSXCOG00000017401	lig4	100	91.347	Xiphophorus_couchianus
ENSCVAG00000007896	lig4	100	90.690	ENSXMAG00000015142	lig4	99	91.238	Xiphophorus_maculatus