EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000008668 (Gene tree)
Gene ID: 107101413
Gene Symbol: smarca5
Alias: SWI/SNF related|matrix associated|actin dependent regulator of chromatin A5|chunp6878|fb26d12|fb49g04|im:7146484|wu:fb26d12|wu:fb49g04|zgc:158434
Full Name: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 13738 bases
Position: chrKL653592.1:7680-21417
Accession: 107101413
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000006999	ResIII	PF04851.15	2.2e-11	1	1
ENSCVAP00000024491	ResIII	PF04851.15	9.7e-09	1	1
ENSCVAP00000006999	DEAD	PF00270.29	2.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000004041	-	6485	XM_015400315	ENSCVAP00000006999	1035 (aa)	XP_015255801	UPI000742A5E0
ENSCVAT00000004062	-	2550	-	ENSCVAP00000024491	849 (aa)	-	-

Gene Model

Click here to download ENSCVAG00000008668's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000008668's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000008668	smarca5	66	39.478	ENSCVAG00000002595	chd1l	57	41.348
ENSCVAG00000008668	smarca5	50	31.983	ENSCVAG00000008090	ercc6l	71	32.863
ENSCVAG00000008668	smarca5	51	43.973	ENSCVAG00000012049	-	82	44.699
ENSCVAG00000008668	smarca5	52	30.221	ENSCVAG00000009200	rad54b	66	30.221

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000008668	smarca5	99	83.628	ENSG00000102038	SMARCA1	93	83.096	Homo_sapiens
ENSCVAG00000008668	smarca5	100	96.815	ENSAPOG00000016035	smarca5	100	96.815	Acanthochromis_polyacanthus
ENSCVAG00000008668	smarca5	99	82.695	ENSAMEG00000015218	SMARCA1	93	82.093	Ailuropoda_melanoleuca
ENSCVAG00000008668	smarca5	99	97.403	ENSACIG00000016982	smarca5	100	97.558	Amphilophus_citrinellus
ENSCVAG00000008668	smarca5	100	96.815	ENSAOCG00000015578	smarca5	100	96.815	Amphiprion_ocellaris
ENSCVAG00000008668	smarca5	99	97.872	ENSAPEG00000011117	smarca5	99	97.872	Amphiprion_percula
ENSCVAG00000008668	smarca5	100	96.715	ENSATEG00000012894	smarca5	100	96.715	Anabas_testudineus
ENSCVAG00000008668	smarca5	99	84.217	ENSAPLG00000013149	SMARCA1	99	83.605	Anas_platyrhynchos
ENSCVAG00000008668	smarca5	99	84.552	ENSACAG00000011376	SMARCA1	94	84.114	Anolis_carolinensis
ENSCVAG00000008668	smarca5	99	78.092	ENSANAG00000023098	SMARCA1	93	78.310	Aotus_nancymaae
ENSCVAG00000008668	smarca5	100	97.008	ENSACLG00000025356	smarca5	100	97.008	Astatotilapia_calliptera
ENSCVAG00000008668	smarca5	99	84.298	ENSAMXG00000011227	smarca1	99	85.163	Astyanax_mexicanus
ENSCVAG00000008668	smarca5	99	94.805	ENSAMXG00000005709	smarca5	100	90.357	Astyanax_mexicanus
ENSCVAG00000008668	smarca5	99	83.867	ENSBTAG00000002292	SMARCA1	91	83.246	Bos_taurus
ENSCVAG00000008668	smarca5	99	66.392	WBGene00002169	isw-1	95	63.777	Caenorhabditis_elegans
ENSCVAG00000008668	smarca5	99	83.628	ENSCJAG00000002868	SMARCA1	93	83.096	Callithrix_jacchus
ENSCVAG00000008668	smarca5	99	75.059	ENSCAFG00000018673	SMARCA1	99	75.059	Canis_familiaris
ENSCVAG00000008668	smarca5	99	83.863	ENSCAFG00020001751	SMARCA1	93	83.198	Canis_lupus_dingo
ENSCVAG00000008668	smarca5	99	83.510	ENSCHIG00000009837	SMARCA1	92	82.994	Capra_hircus
ENSCVAG00000008668	smarca5	99	83.863	ENSTSYG00000004240	SMARCA1	94	84.055	Carlito_syrichta
ENSCVAG00000008668	smarca5	99	83.039	ENSCPOG00000013601	SMARCA1	93	81.680	Cavia_porcellus
ENSCVAG00000008668	smarca5	99	80.565	ENSCCAG00000030817	SMARCA1	93	80.346	Cebus_capucinus
ENSCVAG00000008668	smarca5	97	84.848	ENSCATG00000015921	SMARCA1	93	82.093	Cercocebus_atys
ENSCVAG00000008668	smarca5	99	83.157	ENSCLAG00000002171	SMARCA1	93	82.383	Chinchilla_lanigera
ENSCVAG00000008668	smarca5	99	83.628	ENSCSAG00000008460	SMARCA1	93	83.096	Chlorocebus_sabaeus
ENSCVAG00000008668	smarca5	99	84.335	ENSCPBG00000001146	SMARCA1	93	83.910	Chrysemys_picta_bellii
ENSCVAG00000008668	smarca5	99	76.588	ENSCING00000004110	swi/snf	99	73.320	Ciona_intestinalis
ENSCVAG00000008668	smarca5	99	76.561	ENSCSAVG00000004620	-	99	75.727	Ciona_savignyi
ENSCVAG00000008668	smarca5	99	83.628	ENSCANG00000007183	SMARCA1	93	83.198	Colobus_angolensis_palliatus
ENSCVAG00000008668	smarca5	99	82.921	ENSCGRG00001010776	Smarca1	93	82.281	Cricetulus_griseus_chok1gshd
ENSCVAG00000008668	smarca5	97	83.879	ENSCGRG00000015301	Smarca1	94	82.806	Cricetulus_griseus_crigri
ENSCVAG00000008668	smarca5	99	97.285	ENSCSEG00000000328	smarca5	100	96.135	Cynoglossus_semilaevis
ENSCVAG00000008668	smarca5	99	82.488	ENSDARG00000012776	smarca1	96	82.482	Danio_rerio
ENSCVAG00000008668	smarca5	99	94.451	ENSDARG00000052348	smarca5	100	90.347	Danio_rerio
ENSCVAG00000008668	smarca5	97	84.485	ENSDNOG00000004315	SMARCA1	91	83.987	Dasypus_novemcinctus
ENSCVAG00000008668	smarca5	97	84.727	ENSDORG00000009270	Smarca1	90	84.517	Dipodomys_ordii
ENSCVAG00000008668	smarca5	97	78.434	FBgn0011604	Iswi	99	71.773	Drosophila_melanogaster
ENSCVAG00000008668	smarca5	89	78.571	ENSETEG00000017426	SMARCA1	83	80.000	Echinops_telfairi
ENSCVAG00000008668	smarca5	99	83.175	ENSEBUG00000001239	smarca5	99	80.834	Eptatretus_burgeri
ENSCVAG00000008668	smarca5	97	82.704	ENSEASG00005008218	SMARCA1	99	79.251	Equus_asinus_asinus
ENSCVAG00000008668	smarca5	99	83.863	ENSECAG00000012106	SMARCA1	92	83.096	Equus_caballus
ENSCVAG00000008668	smarca5	79	86.667	ENSEEUG00000014927	SMARCA1	80	84.437	Erinaceus_europaeus
ENSCVAG00000008668	smarca5	99	84.298	ENSELUG00000010515	smarca1	95	84.824	Esox_lucius
ENSCVAG00000008668	smarca5	99	83.746	ENSFCAG00000018496	SMARCA1	93	83.096	Felis_catus
ENSCVAG00000008668	smarca5	93	85.461	ENSFALG00000000209	SMARCA1	98	84.683	Ficedula_albicollis
ENSCVAG00000008668	smarca5	97	83.154	ENSFDAG00000009818	SMARCA1	94	82.618	Fukomys_damarensis
ENSCVAG00000008668	smarca5	99	99.055	ENSFHEG00000007687	smarca5	100	97.514	Fundulus_heteroclitus
ENSCVAG00000008668	smarca5	97	85.145	ENSGALG00000008431	SMARCA1	95	84.391	Gallus_gallus
ENSCVAG00000008668	smarca5	100	98.744	ENSGAFG00000017731	smarca5	100	98.744	Gambusia_affinis
ENSCVAG00000008668	smarca5	99	84.198	ENSGAGG00000023575	SMARCA1	99	84.156	Gopherus_agassizii
ENSCVAG00000008668	smarca5	70	96.000	ENSGGOG00000012841	-	92	79.270	Gorilla_gorilla
ENSCVAG00000008668	smarca5	99	82.803	ENSHGLG00000003080	SMARCA1	93	82.179	Heterocephalus_glaber_female
ENSCVAG00000008668	smarca5	99	82.803	ENSHGLG00100001102	SMARCA1	99	81.680	Heterocephalus_glaber_male
ENSCVAG00000008668	smarca5	99	97.403	ENSHCOG00000005458	smarca5	100	95.849	Hippocampus_comes
ENSCVAG00000008668	smarca5	99	84.652	ENSIPUG00000016905	Smarca1	99	83.809	Ictalurus_punctatus
ENSCVAG00000008668	smarca5	99	94.333	ENSIPUG00000005229	SMARCA5	99	92.415	Ictalurus_punctatus
ENSCVAG00000008668	smarca5	99	83.392	ENSSTOG00000014524	SMARCA1	97	81.194	Ictidomys_tridecemlineatus
ENSCVAG00000008668	smarca5	99	82.803	ENSJJAG00000002593	Smarca1	93	81.864	Jaculus_jaculus
ENSCVAG00000008668	smarca5	100	97.488	ENSKMAG00000003777	smarca5	100	97.488	Kryptolebias_marmoratus
ENSCVAG00000008668	smarca5	99	97.166	ENSLBEG00000018112	smarca5	100	95.556	Labrus_bergylta
ENSCVAG00000008668	smarca5	93	97.468	ENSLBEG00000013295	SMARCA1	100	97.468	Labrus_bergylta
ENSCVAG00000008668	smarca5	99	85.172	ENSLACG00000016697	SMARCA1	95	84.845	Latimeria_chalumnae
ENSCVAG00000008668	smarca5	99	85.613	ENSLOCG00000014591	smarca1	95	85.510	Lepisosteus_oculatus
ENSCVAG00000008668	smarca5	99	82.921	ENSLAFG00000000896	SMARCA1	98	81.883	Loxodonta_africana
ENSCVAG00000008668	smarca5	99	83.628	ENSMFAG00000002117	SMARCA1	94	84.127	Macaca_fascicularis
ENSCVAG00000008668	smarca5	97	84.848	ENSMMUG00000008818	SMARCA1	97	84.345	Macaca_mulatta
ENSCVAG00000008668	smarca5	97	84.848	ENSMNEG00000041768	SMARCA1	94	84.127	Macaca_nemestrina
ENSCVAG00000008668	smarca5	99	83.628	ENSMLEG00000043198	SMARCA1	93	83.096	Mandrillus_leucophaeus
ENSCVAG00000008668	smarca5	99	97.521	ENSMAMG00000014294	smarca5	100	96.439	Mastacembelus_armatus
ENSCVAG00000008668	smarca5	100	97.008	ENSMZEG00005009369	smarca5	100	97.008	Maylandia_zebra
ENSCVAG00000008668	smarca5	99	82.907	ENSMGAG00000007042	SMARCA1	98	82.596	Meleagris_gallopavo
ENSCVAG00000008668	smarca5	97	83.879	ENSMAUG00000008133	Smarca1	91	82.094	Mesocricetus_auratus
ENSCVAG00000008668	smarca5	99	83.863	ENSMICG00000015768	SMARCA1	93	83.401	Microcebus_murinus
ENSCVAG00000008668	smarca5	99	82.803	ENSMOCG00000009464	Smarca1	93	81.560	Microtus_ochrogaster
ENSCVAG00000008668	smarca5	99	95.514	ENSMMOG00000005547	smarca5	100	95.770	Mola_mola
ENSCVAG00000008668	smarca5	99	84.434	ENSMODG00000013187	-	94	83.795	Monodelphis_domestica
ENSCVAG00000008668	smarca5	99	97.403	ENSMALG00000002081	smarca5	100	96.239	Monopterus_albus
ENSCVAG00000008668	smarca5	99	82.921	MGP_CAROLIEiJ_G0033034	Smarca1	92	82.096	Mus_caroli
ENSCVAG00000008668	smarca5	99	82.921	ENSMUSG00000031099	Smarca1	93	81.864	Mus_musculus
ENSCVAG00000008668	smarca5	99	83.254	MGP_PahariEiJ_G0031579	Smarca1	92	82.143	Mus_pahari
ENSCVAG00000008668	smarca5	99	82.921	MGP_SPRETEiJ_G0034192	Smarca1	93	81.864	Mus_spretus
ENSCVAG00000008668	smarca5	99	82.695	ENSMPUG00000017423	SMARCA1	88	82.193	Mustela_putorius_furo
ENSCVAG00000008668	smarca5	99	81.228	ENSMLUG00000029614	SMARCA1	93	80.622	Myotis_lucifugus
ENSCVAG00000008668	smarca5	97	84.242	ENSNGAG00000006492	Smarca1	91	82.408	Nannospalax_galili
ENSCVAG00000008668	smarca5	99	97.403	ENSNBRG00000004463	smarca5	100	97.588	Neolamprologus_brichardi
ENSCVAG00000008668	smarca5	97	84.000	ENSNLEG00000015179	SMARCA1	94	83.404	Nomascus_leucogenys
ENSCVAG00000008668	smarca5	93	75.312	ENSMEUG00000008819	SMARCA1	97	75.996	Notamacropus_eugenii
ENSCVAG00000008668	smarca5	97	83.154	ENSODEG00000012163	SMARCA1	91	82.513	Octodon_degus
ENSCVAG00000008668	smarca5	100	97.104	ENSONIG00000009993	smarca5	100	97.104	Oreochromis_niloticus
ENSCVAG00000008668	smarca5	99	84.788	ENSOANG00000002862	SMARCA1	99	84.568	Ornithorhynchus_anatinus
ENSCVAG00000008668	smarca5	99	83.746	ENSOCUG00000001047	SMARCA1	93	83.198	Oryctolagus_cuniculus
ENSCVAG00000008668	smarca5	99	97.285	ENSORLG00000021998	smarca5	100	95.573	Oryzias_latipes
ENSCVAG00000008668	smarca5	99	97.403	ENSORLG00020017679	smarca5	100	95.665	Oryzias_latipes_hni
ENSCVAG00000008668	smarca5	99	97.285	ENSORLG00015017210	smarca5	100	96.143	Oryzias_latipes_hsok
ENSCVAG00000008668	smarca5	99	97.048	ENSOMEG00000000086	smarca5	100	95.946	Oryzias_melastigma
ENSCVAG00000008668	smarca5	97	83.971	ENSOGAG00000004399	SMARCA1	91	83.455	Otolemur_garnettii
ENSCVAG00000008668	smarca5	99	83.510	ENSOARG00000014638	SMARCA1	99	83.231	Ovis_aries
ENSCVAG00000008668	smarca5	99	83.628	ENSPPAG00000034647	SMARCA1	93	83.096	Pan_paniscus
ENSCVAG00000008668	smarca5	99	83.863	ENSPPRG00000008929	SMARCA1	93	83.198	Panthera_pardus
ENSCVAG00000008668	smarca5	99	81.640	ENSPTIG00000000915	SMARCA1	96	81.281	Panthera_tigris_altaica
ENSCVAG00000008668	smarca5	99	83.628	ENSPTRG00000049876	SMARCA1	93	82.093	Pan_troglodytes
ENSCVAG00000008668	smarca5	99	83.628	ENSPANG00000003871	SMARCA1	93	83.096	Papio_anubis
ENSCVAG00000008668	smarca5	97	84.096	ENSPKIG00000013411	smarca1	99	81.994	Paramormyrops_kingsleyae
ENSCVAG00000008668	smarca5	99	84.198	ENSPSIG00000010101	SMARCA1	99	84.156	Pelodiscus_sinensis
ENSCVAG00000008668	smarca5	97	84.000	ENSPEMG00000017503	Smarca1	91	82.408	Peromyscus_maniculatus_bairdii
ENSCVAG00000008668	smarca5	99	84.552	ENSPCIG00000015460	SMARCA1	96	84.221	Phascolarctos_cinereus
ENSCVAG00000008668	smarca5	100	98.841	ENSPFOG00000007649	smarca5	100	98.841	Poecilia_formosa
ENSCVAG00000008668	smarca5	100	98.841	ENSPLAG00000003363	smarca5	100	98.841	Poecilia_latipinna
ENSCVAG00000008668	smarca5	100	98.744	ENSPMEG00000019849	smarca5	100	98.744	Poecilia_mexicana
ENSCVAG00000008668	smarca5	100	98.647	ENSPREG00000023250	smarca5	100	98.647	Poecilia_reticulata
ENSCVAG00000008668	smarca5	99	80.330	ENSPPYG00000020703	SMARCA1	93	80.244	Pongo_abelii
ENSCVAG00000008668	smarca5	77	75.000	ENSPCOG00000020722	SMARCA1	93	79.822	Propithecus_coquereli
ENSCVAG00000008668	smarca5	90	83.097	ENSPVAG00000003805	SMARCA1	84	83.180	Pteropus_vampyrus
ENSCVAG00000008668	smarca5	58	98.684	ENSPNYG00000012299	smarca5	93	98.684	Pundamilia_nyererei
ENSCVAG00000008668	smarca5	99	82.686	ENSRNOG00000003762	Smarca1	93	82.077	Rattus_norvegicus
ENSCVAG00000008668	smarca5	99	83.628	ENSRROG00000034167	SMARCA1	93	83.198	Rhinopithecus_roxellana
ENSCVAG00000008668	smarca5	99	83.628	ENSSBOG00000020641	SMARCA1	99	83.231	Saimiri_boliviensis_boliviensis
ENSCVAG00000008668	smarca5	99	80.919	ENSSHAG00000013518	SMARCA1	99	79.424	Sarcophilus_harrisii
ENSCVAG00000008668	smarca5	99	85.242	ENSSFOG00015009043	smarca1	96	84.521	Scleropages_formosus
ENSCVAG00000008668	smarca5	99	93.388	ENSSFOG00015016794	smarca5	100	92.990	Scleropages_formosus
ENSCVAG00000008668	smarca5	99	96.812	ENSSMAG00000004801	smarca5	100	95.950	Scophthalmus_maximus
ENSCVAG00000008668	smarca5	100	96.522	ENSSDUG00000020690	smarca5	100	96.522	Seriola_dumerili
ENSCVAG00000008668	smarca5	100	96.522	ENSSLDG00000025190	smarca5	100	96.522	Seriola_lalandi_dorsalis
ENSCVAG00000008668	smarca5	88	85.185	ENSSARG00000000842	SMARCA1	81	84.698	Sorex_araneus
ENSCVAG00000008668	smarca5	97	85.024	ENSSPUG00000000590	SMARCA1	96	82.247	Sphenodon_punctatus
ENSCVAG00000008668	smarca5	99	97.757	ENSSPAG00000002894	smarca5	100	96.718	Stegastes_partitus
ENSCVAG00000008668	smarca5	99	83.628	ENSSSCG00000012649	SMARCA1	97	81.537	Sus_scrofa
ENSCVAG00000008668	smarca5	99	84.099	ENSTGUG00000003899	-	99	83.299	Taeniopygia_guttata
ENSCVAG00000008668	smarca5	100	94.976	ENSTRUG00000014094	smarca5	100	94.976	Takifugu_rubripes
ENSCVAG00000008668	smarca5	99	96.694	ENSTNIG00000017717	smarca5	97	94.851	Tetraodon_nigroviridis
ENSCVAG00000008668	smarca5	95	83.333	ENSTBEG00000014973	SMARCA1	89	82.300	Tupaia_belangeri
ENSCVAG00000008668	smarca5	97	80.048	ENSTTRG00000006168	SMARCA1	96	80.231	Tursiops_truncatus
ENSCVAG00000008668	smarca5	99	83.628	ENSUAMG00000020201	SMARCA1	93	82.892	Ursus_americanus
ENSCVAG00000008668	smarca5	99	79.623	ENSUMAG00000004073	SMARCA1	96	84.597	Ursus_maritimus
ENSCVAG00000008668	smarca5	75	87.329	ENSVPAG00000010492	-	77	87.197	Vicugna_pacos
ENSCVAG00000008668	smarca5	99	83.863	ENSVVUG00000008878	SMARCA1	98	84.665	Vulpes_vulpes
ENSCVAG00000008668	smarca5	99	84.379	ENSXETG00000001526	smarca1	98	83.947	Xenopus_tropicalis
ENSCVAG00000008668	smarca5	99	99.410	ENSXCOG00000011170	smarca5	100	99.206	Xiphophorus_couchianus
ENSCVAG00000008668	smarca5	100	98.841	ENSXMAG00000009678	smarca5	100	98.841	Xiphophorus_maculatus